Data from Lunardon et al. (2020)

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Genome

Physcomitrella patens (Spreading Earthmoss) genome build 3.0 (ppt-b3.0)

Version 3.0 genome build from Phytozome 10 along with plastid and mitochondrial genomes

Locus type

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Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
Ppv3_Cluster_2	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:1532434-1532455	-	29	0.20	AAGAACCUGAGAUUGAAAGAC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-140	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:5867314-5871915	.	3,964	27.18	CGUGAACCUCGGCGCUCUGCC		siRNA21	ShortStack
Ppv3_Cluster_14	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:5870430-5871291	.	2,592	17.78	CGUGAACCUCGGCGCUCUGCC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_15	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:5871652-5871692	+	165	1.13	CGUGAACCUCGGCGCUCUGCC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-200	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:8886081-8887422	.	1,961	13.45	UCGAGGAACCGUAACGACUGC		siRNA21	ShortStack
Ppv3_Cluster_21	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:8886831-8887271	.	1,521	10.43	UCGAGGAACCGUAACGACUGC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-201	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:8887875-8889033	.	2,729	18.71	UCGAGGAACCGUAACGACUGC		siRNA21	ShortStack
Ppv3_Cluster_22	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:8887884-8888939	.	2,703	18.54	UCGAGGAACCGUAACGACUGC		siRNA21	Coruh_et_al_2015
Pp21SR28.1	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:8887889-8888901	.	2,685	18.41	UCGAGGAACCGUAACGACUGC		siRNA21	Cho_et_al_2008
ppt-b3.0r4-221	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:9704599-9704784	.	125	0.86	UCGAAAUCAGCGCUGAAAUC		siRNA21	ShortStack
Ppv3_Cluster_25	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:9800758-9800778	-	57	0.39	CAGCUGUGGAGACACCCUCCU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-233	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:10320270-10320296	-	373	2.56	UGCGAGAAGUCAGAGACAGUC	miR1065	siRNA21	ShortStack
Ppv3_Cluster_28	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:10320271-10320403	-	466	3.20	UGCGAGAAGUCAGAGACAGUC	miR1065	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-234	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:10320376-10320404	-	93	0.64	CAGUCUCUGACUUCUCGCAUG		siRNA21	ShortStack
Ppv3_Cluster_45	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:12221914-12222424	.	302	2.07	AUCUCGGUUGCGUCGUUUUGA		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-295	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:12222011-12222060	-	214	1.47	AUCUCGGUUGCGUCGUUUUGA		siRNA21	ShortStack
Ppv3_Cluster_50	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:12359878-12360263	+	35	0.24	UAUCAUUUUGGGACUAUCUUGGCA		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-300	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:12385023-12385071	+	899	6.17	CAUCUUGGAGUACUGCAUCUU	miR1063	siRNA21	ShortStack
Pp23SR29.4	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:13409410-13412210	.	4	0.03	AGUUGUAGGAUUCAAGAAGACU		siRNA21	Cho_et_al_2008
ppt-b3.0r4-438	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:16417550-16417660	.	470	3.22	AGACGAUAUGCCACUGGAUUG		siRNA21	ShortStack
Ppv3_Cluster_86	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:19694442-19694463	-	45	0.31	GCGAGUGAUGAUGUCUGAGCU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-613	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:22407618-22408582	.	422	2.89	AAUGUUGAUCGCCAGGAACCC		siRNA21	ShortStack
Ppv3_Cluster_90	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:22407673-22407751	.	167	1.15	AAUGUUGAUCGCCAGGAACCC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_91	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:22408024-22408059	+	43	0.30	GCAGAGGAUGCGGAUGGAUGC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_92	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:22410011-22410058	.	129	0.89	AAUGUUGAUCGCCAGGAACCC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-666	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:23985785-23986871	.	356	2.44	AUUGGCGAGCUCGCUGGGCGGC		siRNA21	ShortStack
Ppv3_Cluster_96	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:23986651-23986682	.	59	0.41	AUUGGCGAGCUCGCUGGGCGGC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_97	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:25875159-25875262	.	67	0.46	UCUUUGAUUUCUGGACAUGUC	miR11316	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-763	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:28478679-28478868	.	478	3.28	UCGACGUGAAAUCAUAAUGGU		siRNA21	ShortStack
Ppv3_Cluster_100	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:28478756-28478790	.	447	3.07	UCGACGUGAAAUCAUAAUGGU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-764	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:28479248-28479395	.	309	2.12	CCAUUAUGAUUUCAGGUCGAG		siRNA21	ShortStack
Ppv3_Cluster_101	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr01:28479335-28479369	.	307	2.11	CCAUUAUGAUUUCAGGUCGAG		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-814	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:1280054-1280153	-	137,146	940.49	UGGCAUUGUAGGUUUAAGAGC	miR1028	siRNA21	ShortStack
Ppv3_Cluster_106	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:1340509-1340534	+	1	0.01	CAUGUGGGCCUCAACGUUACU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-854	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:2989783-2989893	+	372	2.55	UUUUUAGCUAGUGUUACAUC		siRNA21	ShortStack
Ppv3_Cluster_108	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:3899957-3900386	.	118	0.81	AAUUGGCAAUGGCUGUAGAAGUU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-871	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:3900108-3900231	.	118	0.81	AAUUGGCAAUGGCUGUAGAAGUU		siRNA21	ShortStack
ppt-b3.0r4-903	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:5003810-5004422	.	88	0.60	UACACGAGUUGGGGCUGUGCC		siRNA21	ShortStack
ppt-b3.0r4-1020	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:10637334-10637806	-	9,105	62.44	AGCGACGACACUCUUUUUGAC		siRNA21	ShortStack
Ppv3_Cluster_118	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:10637335-10637422	-	9,086	62.31	AGCGACGACACUCUUUUUGAC		siRNA21	Coruh_et_al_2015
Pp21SR22.1	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:10637342-10637419	-	9,086	62.31	AGCGACGACACUCUUUUUGAC		siRNA21	Cho_et_al_2008
Pp21SR25.1	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:10637350-10637405	-	9,083	62.29	AGCGACGACACUCUUUUUGAC		siRNA21	Cho_et_al_2008
ppt-b3.0r4-1021	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:10638472-10638841	-	8,075	55.38	AAAGAGUGUCGUCGCCCAUGA		siRNA21	ShortStack
Ppv3_Cluster_119	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:10638663-10638747	-	8,056	55.25	AAAGAGUGUCGUCGCCCAUGA		siRNA21	Coruh_et_al_2015
Pp21SR32.2	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:10638676-10638746	-	8,056	55.25	AAAGAGUGUCGUCGCCCAUGA		siRNA21	Cho_et_al_2008
ppt-b3.0r4-1042	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:11716094-11716236	-	81	0.56	UUUCCUUAACUGAUAACGUAG		siRNA21	ShortStack
Ppv3_Cluster_122	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:11716200-11716228	-	79	0.54	UUUCCUUAACUGAUAACGUAG		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-1049	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:11902042-11902205	.	891	6.11	CGCGAUUCCCGAGACUCUUGA		siRNA21	ShortStack
Pp21SR40.1	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:11902101-11902971	.	1,785	12.24	AUUGAAUUCACAGUUUGCGGC		siRNA21	Cho_et_al_2008
Ppv3_Cluster_123	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:11902116-11902200	.	870	5.97	CGCGAUUCCCGAGACUCUUGA		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-1050	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:11902869-11903144	.	977	6.70	AUUGAAUUCACAGUUUGCGGC		siRNA21	ShortStack
Ppv3_Cluster_124	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:11902869-11903026	.	974	6.68	AUUGAAUUCACAGUUUGCGGC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_131	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:13997084-13997199	+	294	2.02	UCCAUACCACUGCUAGAGACU	miR11318	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-1124	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:13997094-13997190	+	294	2.02	UCCAUACCACUGCUAGAGACU	miR11318	siRNA21	ShortStack
ppt-b3.0r4-1129	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:14359939-14360800	+	1,376	9.44	CAUCUUGGAGUACUGCAUCUU	miR1063	siRNA21	ShortStack
ppt-b3.0r4-1209	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:18820626-18820649	-	98	0.67	UCUUGAGCUGAGAAGACAACU		siRNA21	ShortStack
Ppv3_Cluster_180	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:22324823-22324846	+	4	0.03	UCCACUUACACGUUUGAUUUG		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-1400	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:25556731-25557520	.	4,647	31.87	CAACGAAGUCGUGAACAACUU		siRNA21	ShortStack
PpTAS3f	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:25556806-25557246	.	4,575	31.37	CAACGAAGUCGUGAACAACUU		siRNA21	Arif_et_al_2012
Pp21SR6.1	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:25556818-25557212	.	4,424	30.34	CAACGAAGUCGUGAACAACUU		siRNA21	Cho_et_al_2008
Ppv3_Cluster_192	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:25556830-25557270	.	4,580	31.41	CAACGAAGUCGUGAACAACUU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-1401	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:25557952-25558960	.	6,469	44.36	UGACAGAAGAGAGUGAGCACC	miR156	siRNA21	ShortStack
Ppv3_Cluster_193	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:25558021-25558637	.	6,380	43.75	UGACAGAAGAGAGUGAGCACC	miR156	siRNA21	Coruh_et_al_2015
PpTAS6b	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr02:25558022-25558657	.	6,384	43.78	UGACAGAAGAGAGUGAGCACC	miR156	siRNA21	Arif_et_al_2012
ppt-b3.0r4-1464	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:1995846-1995952	-	100	0.69	CUCACCAUGGCCACCAGCCCC		siRNA21	ShortStack
Ppv3_Cluster_205	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:1995847-1995877	-	98	0.67	CUCACCAUGGCCACCAGCCCC		siRNA21	Coruh_et_al_2015
Pp23SR44.3	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:5408259-5410758	+	2	0.01	UGAGCACAAGAUUAAGGUACU		siRNA21	Cho_et_al_2008
ppt-b3.0r4-1573	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:8163412-8163589	.	412	2.83	UAUUGCAACUAUGAAGAGUAC		siRNA21	ShortStack
Ppv3_Cluster_219	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:8163412-8163587	.	412	2.83	UAUUGCAACUAUGAAGAGUAC		siRNA21	Coruh_et_al_2015
Pp21SR14.1	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:8163430-8163487	.	165	1.13	UAUUGCAACUAUGAAGAGUAC		siRNA21	Cho_et_al_2008
Pp21SR14.2	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:8163516-8163572	-	246	1.69	UAUUGCAACUAUGAAGAGUAC		siRNA21	Cho_et_al_2008
ppt-b3.0r4-1597	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:8658574-8658971	+	2,270	15.57	UUGCACUCCUCUAUCUCCCUC	miR1220	siRNA21	ShortStack
ppt-b3.0r4-1599	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:8671416-8671454	-	116	0.80	AAGAUAGAGGAGUUCAAGAAC	miR1220	siRNA21	ShortStack
ppt-MIR1220b	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:8671417-8671621	-	264	1.81	UCGGACUCCUCUAUCUCCCUC	miR1220	siRNA21	miRBase21
ppt-b3.0r4-1600	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:8671584-8671619	-	148	1.02	UCGGACUCCUCUAUCUCCCUC	miR1220	siRNA21	ShortStack
Ppv3_Cluster_222	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:8671596-8671619	-	148	1.02	UCGGACUCCUCUAUCUCCCUC	miR1220	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-1620	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:9992952-9992982	+	459	3.15	UCUGCAUCUGCACCUGCACCA	miR1030	siRNA21	ShortStack
ppt-b3.0r4-1682	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:12192013-12192448	.	74	0.51	UAUGUAGAACAAUUGUGGGCC		siRNA21	ShortStack
Ppv3_Cluster_238	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:12192884-12192919	.	39	0.27	UCUAUGUGAAACUCAUGGCCC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_250	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:16486351-16486371	+	73	0.50	UCAAGUCGAUCAAAGUCUCGA		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_267	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:16716842-16716920	-	12	0.08	CUUGGAUCCAAAAUUGACUCU		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_286	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:17569022-17569261	.	19	0.13	AAGAACAUGUCGUUCUUGAGGGCC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-1922	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:21128222-21128300	-	136	0.93	CUCACUGACAAUGCUCUGCAG		siRNA21	ShortStack
Ppv3_Cluster_293	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:21128271-21128292	-	135	0.93	CUCACUGACAAUGCUCUGCAG		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_294	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr03:21314472-21314492	+	53	0.36	CUCGGAAACCCAUCAUUAGGG		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_346	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:2236375-2236426	+	5	0.03	UUGGCGGAGUUACGGAAGUAC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_387	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:4231265-4231289	-	165	1.13	AUUAGAGCUGGAGUACAAACU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-2153	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:4231265-4231301	-	165	1.13	AUUAGAGCUGGAGUACAAACU		siRNA21	ShortStack
Ppv3_Cluster_388	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:4231609-4231630	-	63	0.43	UUUGUACUCCAGCUCUAAAAG		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-2162	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:4723190-4723317	.	430	2.95	CCAAUGCAUUGAUCCAGGGUG		siRNA21	ShortStack
Ppv3_Cluster_389	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:4723247-4723313	.	429	2.94	CCAAUGCAUUGAUCCAGGGUG		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_396	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:7704808-7704831	+	1	0.01	GAUUCUAAAUCUUCGGCAAGA		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-2234	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:8309984-8310141	-	39,699	272.24	UGCAUGACCGUCUCUUCCUGC	miR1211	siRNA21	ShortStack
Ppv3_Cluster_399	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:8310044-8310155	-	39,698	272.23	UGCAUGACCGUCUCUUCCUGC	miR1211	siRNA21	Coruh_et_al_2015
ppt-MIR1211	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:8310044-8310155	-	39,698	272.23	UGCAUGACCGUCUCUUCCUGC	miR1211	siRNA21	miRBase21
ppt-b3.0r4-2284	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:10209728-10211132	-	312,393	2,142.27	GCUAUUGGUGGUCAGGAAUAG	miR1219	siRNA21	ShortStack
ppt-b3.0r4-2285	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:10244798-10245224	.	5,127	35.16	AUAGACAAAACAACAAGGGCU		siRNA21	ShortStack
PpTAS3b	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:10244929-10245119	.	5,123	35.13	AUAGACAAAACAACAAGGGCU		siRNA21	Arif_et_al_2012
Ppv3_Cluster_405	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:10244940-10245111	.	5,121	35.12	AUAGACAAAACAACAAGGGCU		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_412	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:13479550-13479585	-	39	0.27	CCUUAGCAGCUGUAUUUCAAC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-2428	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:16090352-16092548	.	1,592	10.92	AUCGAGAUUCAAUGAAGGCUGC		siRNA21	ShortStack
Ppv3_Cluster_415	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:16091410-16092438	.	1,349	9.25	AUCGAGAUUCAAUGAAGGCUGC		siRNA21	Coruh_et_al_2015
Pp21SR27.1	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:16092873-16094598	.	3,360	23.04	AAUCUGAUUAUGGACUACUGCCU		siRNA21	Cho_et_al_2008
Ppv3_Cluster_416	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:16093166-16094708	.	3,497	23.98	AAUCUGAUUAUGGACUACUGCCU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-2429	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:16093166-16095478	.	3,627	24.87	AAUCUGAUUAUGGACUACUGCCU		siRNA21	ShortStack
ppt-b3.0r4-2454	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:17155546-17156180	+	12,298	84.34	UCUGCAUCUGCACCUGCACCA	miR1030	siRNA21	ShortStack
Ppv3_Cluster_422	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:18927760-18928604	.	1,270	8.71	AGGUACUGCCCAGCGGAUUGC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-2532	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:20855206-20856012	+	4,446	30.49	GACCUCGGAUAUACUUGUACC		siRNA21	ShortStack
Ppv3_Cluster_428	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr04:20855960-20856001	+	4,357	29.88	GACCUCGGAUAUACUUGUACC		siRNA21	Coruh_et_al_2015
ppt-MIR1069	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:706260-706503	+	343	2.35	CUUAUCAUUGGAUUGAGCACC	miR1069	siRNA21	miRBase21
ppt-b3.0r4-2585	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:706288-706330	+	298	2.04	CUUAUCAUUGGAUUGAGCACC	miR1069	siRNA21	ShortStack
Ppv3_Cluster_431	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:706288-706318	+	298	2.04	CUUAUCAUUGGAUUGAGCACC	miR1069	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-2655	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:2836031-2836311	.	252	1.73	UGUUCCGCAUUCACAAAACUG		siRNA21	ShortStack
Ppv3_Cluster_433	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:2836066-2836169	.	245	1.68	UGUUCCGCAUUCACAAAACUG		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-2656	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:2836783-2836925	.	569	3.90	UGUUCCGCAUUCACAAAACUG		siRNA21	ShortStack
Ppv3_Cluster_434	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:2836784-2836894	.	567	3.89	UGUUCCGCAUUCACAAAACUG		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-2737	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:7144367-7144802	+	64,287	440.86	CCGGACCAGGCUUCAUUCCCC	miR166	siRNA21	ShortStack
Ppv3_Cluster_441	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:7144642-7144886	+	64,284	440.83	CCGGACCAGGCUUCAUUCCCC	miR166	siRNA21	Coruh_et_al_2015
ppt-MIR166l	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:7144693-7144825	+	64,282	440.82	CCGGACCAGGCUUCAUUCCCC	miR166	siRNA21	miRBase21
ppt-b3.0r4-2815	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:10584451-10584730	-	109	0.75	GCCGAGAACCGUAGGAUUGAA		siRNA21	ShortStack
Ppv3_Cluster_444	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:10584547-10584573	-	87	0.60	GCCGAGAACCGUAGGAUUGAA		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-2952	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:16438797-16438882	+	449	3.08	CGUUUCACGUCGGGUUCACCA	miR894	siRNA21	ShortStack
Ppv3_Cluster_449	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:16896594-16896614	+	104	0.71	UAAUCAUGAUAAUCAAGGAAU		siRNA21	Coruh_et_al_2015
ppt-MIR1223j	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:18717592-18717739	-	397	2.72	UUGAUUGUAGAGUCAUGCACC	miR1223	siRNA21	miRBase21
ppt-b3.0r4-2985	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:18717600-18717730	-	397	2.72	UUGAUUGUAGAGUCAUGCACC	miR1223	siRNA21	ShortStack
Ppv3_Cluster_451	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr05:18717603-18717727	-	397	2.72	UUGAUUGUAGAGUCAUGCACC	miR1223	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-3050	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr06:863400-864057	+	9,785	67.10	UGAUGGUGAUGCGCUUGUAUC	miR1216	siRNA21	ShortStack
ppt-b3.0r4-3064	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr06:1684564-1684667	+	353	2.42	CCGUCCAUGAACGUUCGUCCC		siRNA21	ShortStack
Ppv3_Cluster_458	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr06:1684601-1684662	+	349	2.39	CCGUCCAUGAACGUUCGUCCC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-3070	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr06:1961771-1961872	.	3,575	24.52	UCGCCGACUAGAAUUUUAUCU		siRNA21	ShortStack
Ppv3_Cluster_459	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr06:1961794-1961864	.	3,575	24.52	UCGCCGACUAGAAUUUUAUCU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-3245	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr06:10405970-10406062	.	154	1.06	AAUGUGCUGCUCUGGCUGCCU		siRNA21	ShortStack
Ppv3_Cluster_478	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr06:10405983-10406060	.	154	1.06	AAUGUGCUGCUCUGGCUGCCU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-3500	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:2829019-2829128	.	1,352	9.27	AGAGUUGAUGUUGAUGACGCA	miR2079	siRNA21	ShortStack
ppt-MIR2079	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:2829022-2829144	.	1,352	9.27	AGAGUUGAUGUUGAUGACGCA	miR2079	siRNA21	miRBase21
Ppv3_Cluster_490	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:2829041-2829127	.	1,352	9.27	AGAGUUGAUGUUGAUGACGCA	miR2079	siRNA21	Coruh_et_al_2015
Ppv3_Cluster_498	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:10850074-10850116	+	5	0.03	UGCCUAAUCUCGUCAGUUUUGG		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_499	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:10850175-10850217	.	28	0.19	UCGGGAACCAGACUGAAGUCUC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_500	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:10850460-10850770	.	59	0.41	UCUGAGAAAGCCGGAUGGACUC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_502	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:10850932-10851779	.	249	1.71	UCGGAACAGUCGGAAUUAACGA		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-3680	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:10851273-10851646	.	204	1.40	UCGGAACAGUCGGAAUUAACGA		siRNA21	ShortStack
ppt-b3.0r4-3681	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:10852672-10853178	.	226	1.55	ACGGACACCGCACCAUCAGCAGG		siRNA21	ShortStack
Ppv3_Cluster_503	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:10852683-10853846	.	405	2.78	UGCAGGGAAAUCGGAGUGUUUC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-3684	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:11070141-11070258	.	177	1.21	AUCCAAGUUAAUCUAGUUGAC		siRNA21	ShortStack
PpTAS6c	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:11795309-11795482	.	10	0.07	UUCCAACAAGAUCUACACUAU		siRNA21	Arif_et_al_2012
ppt-b3.0r4-3704	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:11796027-11796719	.	38,491	263.96	UUCCAUGUCGGUUUUAUAUCAC		siRNA21	ShortStack
Ppv3_Cluster_506	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:11796263-11796513	.	38,419	263.46	UUCCAUGUCGGUUUUAUAUCAC		siRNA21	Coruh_et_al_2015
PpTAS3d	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:11796267-11796521	.	38,419	263.46	UUCCAUGUCGGUUUUAUAUCAC		siRNA21	Arif_et_al_2012
ppt-b3.0r4-3759	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:15103055-15103200	+	240	1.65	UCGAGAAUGGUGUCGUAGAGC		siRNA21	ShortStack
Ppv3_Cluster_513	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:15103164-15103189	+	236	1.62	UCGAGAAUGGUGUCGUAGAGC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-3796	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:16224645-16225221	+	167	1.15	GGUAGCGGAACUCCCAUCACC		siRNA21	ShortStack
Ppv3_Cluster_515	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:16225040-16225063	+	136	0.93	GGUAGCGGAACUCCCAUCACC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_517	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr07:17014048-17014073	+	51	0.35	AUCGGCUGAUGAGCACCUCGG		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_523	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr08:1487271-1487301	+	45	0.31	UUCCGGAUCCAAGACAAAAGA		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-3927	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr08:3290143-3290262	.	1,470	10.08	AGGACCACUCUCACCCGAAAA	miR1041	siRNA21	ShortStack
ppt-MIR1041	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr08:3290147-3290288	.	1,470	10.08	AGGACCACUCUCACCCGAAAA	miR1041	siRNA21	miRBase21
Ppv3_Cluster_544	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr08:3290176-3290205	.	1,448	9.93	AGGACCACUCUCACCCGAAAA	miR1041	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-3932	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr08:3535287-3535532	.	86	0.59	AGCACAGGGACAACGGAGUGU	miR11322	siRNA21	ShortStack
Ppv3_Cluster_545	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr08:3535299-3535436	.	84	0.58	AGCACAGGGACAACGGAGUGU	miR11322	siRNA21	Coruh_et_al_2015
Ppv3_Cluster_547	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr08:4297724-4297746	.	2	0.01	UCAAACAACAAGACUCGGGAGU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-3946	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr08:4367205-4367982	-	4,703	32.25	UCUCUCUUAGCCAAACAGUCU	miR1049	siRNA21	ShortStack
ppt-MIR1049	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr08:4367713-4367851	-	4,678	32.08	UCUCUCUUAGCCAAACAGUCU	miR1049	siRNA21	miRBase21
Ppv3_Cluster_550	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr08:4367728-4367836	-	4,673	32.05	UCUCUCUUAGCCAAACAGUCU	miR1049	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-3950	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr08:4969875-4970332	-	258	1.77	CCUAGAAAUCGACCUGCACC		siRNA21	ShortStack
ppt-b3.0r4-4173	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr08:16898935-16899054	-	161	1.10	CCCUGGGACUUCCUCUACGAG		siRNA21	ShortStack
ppt-MIR2080	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr09:2064958-2065086	.	4,767	32.69	UCUGAAGCGGCAUCUGCGAAU	miR2080	siRNA21	miRBase21
ppt-b3.0r4-4237	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr09:2064978-2065086	.	4,767	32.69	UCUGAAGCGGCAUCUGCGAAU	miR2080	siRNA21	ShortStack
Ppv3_Cluster_579	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr09:2064980-2065063	.	4,767	32.69	UCUGAAGCGGCAUCUGCGAAU	miR2080	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-4343	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr09:7949995-7950831	+	242,303	1,661.62	CUUGGACUGAAGGGAGCUCCC	miR319	siRNA21	ShortStack
ppt-b3.0r4-4412	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr09:11821110-11821189	-	134	0.92	UACCUUAAUCACUCUGAACAG		siRNA21	ShortStack
Ppv3_Cluster_591	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr09:11821149-11821172	-	128	0.88	UACCUUAAUCACUCUGAACAG		siRNA21	Coruh_et_al_2015
ppt-MIR1023e	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr10:3221227-3221346	-	8	0.06	ACACUCUCUCCGUUUCCCUUC	miR1023	siRNA21	miRBase21
ppt-b3.0r4-4646	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr10:4980041-4980445	+	25,924	177.78	AAGCUUCACAGAACAUUGACU	miR1031	siRNA21	ShortStack
ppt-b3.0r4-4678	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr10:5775925-5776156	+	161	1.10	CAUCAACUCGUGGAGUGCCUC		siRNA21	ShortStack
Ppv3_Cluster_625	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr10:5776056-5776122	+	154	1.06	CAUCAACUCGUGGAGUGCCUC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-4679	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr10:5779816-5779915	.	115	0.79	GGCACUCCACGAGUUGAUGGGC		siRNA21	ShortStack
Ppv3_Cluster_626	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr10:5779818-5779844	.	83	0.57	GGCACUCCACGAGUUGAUGGGC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-4781	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr10:9627557-9627856	-	2,794	19.16	AUUGGGACUUGUGCUGGGACA	miR893	siRNA21	ShortStack
Ppv3_Cluster_650	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr10:9627604-9627853	-	2,792	19.15	AUUGGGACUUGUGCUGGGACA	miR893	siRNA21	Coruh_et_al_2015
ppt-MIR893	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr10:9627629-9627848	-	2,791	19.14	AUUGGGACUUGUGCUGGGACA	miR893	siRNA21	miRBase21
ppt-b3.0r4-4824	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr10:11606635-11607440	-	4,326	29.67	UCUCUCUCAACCAACCAUACU	miR1029	siRNA21	ShortStack
ppt-MIR1029	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr10:11607194-11607349	-	4,193	28.75	UCUCUCUCAACCAACCAUACU	miR1029	siRNA21	miRBase21
Ppv3_Cluster_653	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr10:11607220-11607322	-	4,193	28.75	UCUCUCUCAACCAACCAUACU	miR1029	siRNA21	Coruh_et_al_2015
Ppv3_Cluster_660	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr10:16054967-16055014	.	10	0.07	GAAGGUUCUUGAGUUGACUCU		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_668	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr10:16067914-16067941	+	24	0.17	AAGGACAUGAUAUUAUACUCA		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_689	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:961543-961964	.	3	0.02	CAGCCGUACUCCUCAUUUUGA		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-5092	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:5728676-5731080	.	1,402,640	9,618.74	AGGCAGUAGAAGAGCACCGGA		siRNA21	ShortStack
Ppv3_Cluster_700	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:5728742-5729548	+	7,777	53.33	UUGAAGGCCGAGGAGAACAUC		siRNA21	Coruh_et_al_2015
Pp21SR39.1	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:5728901-5729513	+	7,646	52.43	UUGAAGGCCGAGGAGAACAUC		siRNA21	Cho_et_al_2008
PpTAS6a	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:5729342-5729513	+	6,811	46.71	UUGAAGGCCGAGGAGAACAUC		siRNA21	Arif_et_al_2012
Ppv3_Cluster_701	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:5729919-5730889	.	1,394,758	9,564.69	AGGCAGUAGAAGAGCACCGGA		siRNA21	Coruh_et_al_2015
PpTAS3a	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:5730200-5730454	.	1,393,829	9,558.32	AGGCAGUAGAAGAGCACCGGA		siRNA21	Arif_et_al_2012
Ppv3_Cluster_710	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:9716688-9716846	+	23	0.16	AGACGAUUCUCGAUAAGGCUU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-5176	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:9843289-9845027	.	593	4.07	GUUCCGGACAACAAUUUCUGC		siRNA21	ShortStack
Ppv3_Cluster_712	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:9843529-9844087	.	320	2.19	AUGAGAAUCGGACUGGCGGGC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_713	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:9844720-9844751	+	77	0.53	GUUCCGGACAACAAUUUCUGC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-5177	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:9845365-9847840	.	709	4.86	CGCCGAAUGCUGUUGAGCUUU		siRNA21	ShortStack
Ppv3_Cluster_714	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:9845876-9845906	.	33	0.23	ACAAUUACCAGAAAGUCCGGC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_715	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:9846194-9846361	.	113	0.78	AUCGAGAACUCGGAGCCCGCC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_716	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:9846575-9846912	.	168	1.15	CGCCGAAUGCUGUUGAGCUUU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-5179	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:9869110-9873714	.	1,510	10.36	GUUCCGGACAACAAUUUCUGC		siRNA21	ShortStack
Ppv3_Cluster_717	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:9870042-9870278	.	148	1.02	CGCCGAAUGCUGUUGAGCUUU		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_718	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:9870688-9870755	.	80	0.55	AUCGAGAACUCGGAGCCCGCC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_719	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:9870878-9870910	-	15	0.10	ACAUGAGGACACGUUCGACCA		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_720	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:9871972-9872283	.	216	1.48	GUUCCGGACAACAAUUUCUGC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_721	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:9873069-9873104	-	26	0.18	AUUGGAGCGGAUUCCUGUUGC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-5196	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:10644483-10645345	+	5,412	37.11	AAGCUCAGGAGGGAUAGCGCC	miR390	siRNA21	ShortStack
ppt-b3.0r4-5199	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:10754574-10754918	-	13,567	93.04	CCGCAAUCAGUAAAAGGGAGU	miR1052	siRNA21	ShortStack
ppt-b3.0r4-5218	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:11707593-11707723	+	99	0.68	UCGCCACUCGCUGUCGGCAAG		siRNA21	ShortStack
Ppv3_Cluster_728	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:11707672-11707700	+	87	0.60	UCGCCACUCGCUGUCGGCAAG		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-5230	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:12120940-12121030	-	85	0.58	UCUGUCUGCCGUCUCUCAGCU		siRNA21	ShortStack
Ppv3_Cluster_732	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:12961139-12961160	+	116	0.80	CGCAAUGAUGUCACUGAGGUC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-5260	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:12961139-12961164	+	116	0.80	CGCAAUGAUGUCACUGAGGUC		siRNA21	ShortStack
ppt-b3.0r4-5317	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:14987665-14987858	.	286	1.96	UACAAAUACGCAUUUAGGAUU		siRNA21	ShortStack
Ppv3_Cluster_735	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr11:14987668-14987765	.	283	1.94	UACAAAUACGCAUUUAGGAUU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-5398	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr12:907116-908260	.	155	1.06	AUAACGCACGCGACUGUCCAGACC		siRNA21	ShortStack
Ppv3_Cluster_739	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr12:908011-908032	.	32	0.22	AGGAUUGCUCAGGAUUCUCCU		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_751	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr12:6847473-6847493	-	47	0.32	AUGGACCACAUAGUUAGCUUG		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-5537	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr12:6862860-6863355	.	2,091	14.34	UGUGCAUUAGCAAGCGGAUCU		siRNA21	ShortStack
PpTAS3e	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr12:6862919-6863109	.	1,979	13.57	UGUGCAUUAGCAAGCGGAUCU		siRNA21	Arif_et_al_2012
Ppv3_Cluster_752	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr12:6862934-6863251	.	2,056	14.10	UGUGCAUUAGCAAGCGGAUCU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-5670	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr12:12374311-12374951	.	452	3.10	UAAUUGUGCAUGUUGAAGAUG		siRNA21	ShortStack
ppt-b3.0r4-5791	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:2519965-2520271	+	69,385	475.82	CGUGGGACAGCAUAGAAUGCG	miR1212	siRNA21	ShortStack
ppt-b3.0r4-5796	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:2679293-2679392	-	246	1.69	UAUUAUAGUAGCGUUGGACUC		siRNA21	ShortStack
Ppv3_Cluster_775	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:2679295-2679320	-	244	1.67	UAUUAUAGUAGCGUUGGACUC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_813	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:5211209-5211467	.	71	0.49	AGGAUGAGAUGGCUGAACUCA		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-5909	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:7678735-7678810	-	96	0.66	AGACGAUAUGCCACUGGAUUG		siRNA21	ShortStack
ppt-b3.0r4-5979	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:10758167-10758459	.	136	0.93	AAUAUGACGUGUUUAUGAGCU	miR2077	siRNA21	ShortStack
ppt-MIR2077	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:10758230-10758353	.	134	0.92	AAUAUGACGUGUUUAUGAGCU	miR2077	siRNA21	miRBase21
Ppv3_Cluster_836	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:10758298-10758325	.	64	0.44	CACUAAGCUCAUAAACACGCC	miR2077	siRNA21	Coruh_et_al_2015
ppt-MIR2083	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:11433171-11433491	+	4,260	29.21	UGUGAGAGAUUGACGAGUGCA	miR899	siRNA21	miRBase21
ppt-b3.0r4-5997	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:11433301-11433626	+	4,554	31.23	UGUGAGAGAUUGACGAGUGCA	miR899	siRNA21	ShortStack
ppt-MIR899	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:11433352-11433573	+	4,294	29.45	UGUGAGAGAUUGACGAGUGCA	miR899	siRNA21	miRBase21
ppt-MIR900	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:11882003-11882222	.	184,773	1,267.10	CCAGGUACAAGAACACAGCUC	miR900	siRNA21	miRBase21
ppt-b3.0r4-6018	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:11882089-11882181	.	184,773	1,267.10	CCAGGUACAAGAACACAGCUC	miR900	siRNA21	ShortStack
Ppv3_Cluster_840	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:11882099-11882179	.	184,773	1,267.10	CCAGGUACAAGAACACAGCUC	miR900	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-6127	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:16867853-16868325	+	6,043	41.44	GCUAUUGGUAGACAGGAAUAG	miR1219	siRNA21	ShortStack
ppt-b3.0r4-6128	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:16896971-16897528	.	127,180	872.15	UAGGAAUAUCUCUAAAGCCCU		siRNA21	ShortStack
Ppv3_Cluster_873	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:16897169-16897449	.	127,164	872.04	UAGGAAUAUCUCUAAAGCCCU		siRNA21	Coruh_et_al_2015
PpTAS3c	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr13:16897201-16897458	.	127,155	871.98	UAGGAAUAUCUCUAAAGCCCU		siRNA21	Arif_et_al_2012
ppt-b3.0r4-6150	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr14:495641-495677	-	146	1.00	CCUGCAUCUGCACCUGCACCG	miR1030	siRNA21	ShortStack
Pp23SR48.1	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr14:1545579-1554262	.	38	0.26	ACUAGCUAUCAAUCCUUAUGCCU		siRNA21	Cho_et_al_2008
ppt-b3.0r4-6174	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr14:2263018-2263757	.	133	0.91	CAGUCGAACUCCAGGUACUCC		siRNA21	ShortStack
ppt-b3.0r4-6260	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr14:5166402-5166564	+	1,607	11.02	GGUUCAUGUUCAAUACGAUCG		siRNA21	ShortStack
ppt-b3.0r4-6452	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr14:13165531-13165621	.	447	3.07	UGAAAGCACCCAGAAAAUGAU		siRNA21	ShortStack
Ppv3_Cluster_890	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr14:13165533-13165618	.	447	3.07	UGAAAGCACCCAGAAAAUGAU		siRNA21	Coruh_et_al_2015
Pp21SR41.1	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr15:1247692-1248548	-	33	0.23	UCUUGGAGUGUGCGAAUGAGC		siRNA21	Cho_et_al_2008
ppt-MIR1222b	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr15:1335912-1336039	-	1	0.01	UACCAGUGUAUUCCUUCAAAC	miR1222	siRNA21	miRBase21
ppt-b3.0r4-6649	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr15:3194618-3194718	-	126	0.86	AUCCUUGACUUUGUAAUAAAG		siRNA21	ShortStack
Ppv3_Cluster_942	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr15:3194689-3194710	-	123	0.84	AUCCUUGACUUUGUAAUAAAG		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-6709	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr15:5830183-5830523	+	15,086	103.45	UUUCUAUCUUCUCUUCCAAUC	miR1027	siRNA21	ShortStack
Ppv3_Cluster_1005	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr15:6373940-6373984	.	12	0.08	GCAGAUUGGAUUGUUCAGGGU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-6808	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr15:7324298-7325646	.	47,502	325.75	ACUGUGAUAGAUUGUUGUGCC		siRNA21	ShortStack
Ppv3_Cluster_1011	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr15:7325512-7325617	.	47,442	325.34	ACUGUGAUAGAUUGUUGUGCC		siRNA21	Coruh_et_al_2015
Pp21SR3.1	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr15:7325514-7325615	.	47,442	325.34	ACUGUGAUAGAUUGUUGUGCC		siRNA21	Cho_et_al_2008
Ppv3_Cluster_1014	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr15:8882982-8883218	.	151	1.04	AGAUUCGUAGGAAGUAGCUCC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_1016	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr15:9258280-9258504	+	1,231	8.44	GCAUCCAGGGAGCCAGACAGA	miR160	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-6860	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr15:9258321-9258460	+	1,231	8.44	GCAUCCAGGGAGCCAGACAGA	miR160	siRNA21	ShortStack
ppt-MIR160a	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr15:9258342-9258440	+	1,230	8.44	GCAUCCAGGGAGCCAGACAGA	miR160	siRNA21	miRBase21
Ppv3_Cluster_1023	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr15:15398874-15399121	+	2,826	19.38	CACUCGAAGUCACUGUACCUG	miR11328	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-6997	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr15:15398892-15399060	+	2,826	19.38	CACUCGAAGUCACUGUACCUG	miR11328	siRNA21	ShortStack
ppt-b3.0r4-7060	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr16:1453686-1454119	+	86	0.59	CGAUCAAUAACUGUAAUUCGU		siRNA21	ShortStack
ppt-b3.0r4-7062	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr16:1480762-1481133	-	5,410	37.10	AGAAGCCUUUGUGGGAGAGGA	miR477	siRNA21	ShortStack
ppt-b3.0r4-7069	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr16:1689618-1689909	-	236	1.62	CAACUCUCAGUGGAAGCACCA		siRNA21	ShortStack
ppt-b3.0r4-7268	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr16:9405719-9406470	.	263	1.80	UAUUUGACCCCGUUGCAUUGU		siRNA21	ShortStack
Ppv3_Cluster_1039	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr16:9406142-9406233	.	232	1.59	UAUUUGACCCCGUUGCAUUGU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-7329	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr16:11641958-11642100	.	273	1.87	ACUAUGGACCAGUGACAAAAC		siRNA21	ShortStack
Ppv3_Cluster_1042	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr16:11641959-11642077	.	271	1.86	ACUAUGGACCAGUGACAAAAC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-7401	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr16:16056561-16056627	-	1,180	8.09	CGUUUCACGUCGGGUUCACCA	miR894	siRNA21	ShortStack
ppt-b3.0r4-7416	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr16:16530673-16531286	-	5,510	37.79	UGAGUAGACUGUUUUAAGCCU		siRNA21	ShortStack
Ppv3_Cluster_1047	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr16:16530927-16531284	-	5,507	37.77	UGAGUAGACUGUUUUAAGCCU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-7417	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr16:16531588-16532135	.	10,161	69.68	UGAGUAGACUGUUUUAAGCCU		siRNA21	ShortStack
Ppv3_Cluster_1048	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr16:16531754-16532103	.	10,150	69.61	UGAGUAGACUGUUUUAAGCCU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-7424	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:810016-810040	+	322	2.21	AAGGCUGUGAUUCUACCAUAA		siRNA21	ShortStack
Ppv3_Cluster_1049	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:1953895-1954048	-	850	5.83	UUUGCAUCAUAACCCUGGGCU	miR1056	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-7438	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:1953895-1954201	-	852	5.84	UUUGCAUCAUAACCCUGGGCU	miR1056	siRNA21	ShortStack
ppt-MIR1056	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:1953900-1954044	-	850	5.83	UUUGCAUCAUAACCCUGGGCU	miR1056	siRNA21	miRBase21
ppt-b3.0r4-7440	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:2087772-2089540	.	861	5.90	UUGUUCCGGAAUGCUUGCAAC		siRNA21	ShortStack
Ppv3_Cluster_1050	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:2088533-2089443	.	769	5.27	UUGUUCCGGAAUGCUUGCAAC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-7441	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:2089825-2091680	.	839	5.75	UUGUUCCGGAAUGCUUGCAAC		siRNA21	ShortStack
Ppv3_Cluster_1051	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:2089826-2090786	.	735	5.04	UUGUUCCGGAAUGCUUGCAAC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_1054	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:3693203-3693325	-	7,518	51.56	UCGGACCAGGCUUCAUUCCCC	miR166	siRNA21	Coruh_et_al_2015
ppt-MIR166b	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:3693215-3693317	-	7,518	51.56	UCGGACCAGGCUUCAUUCCCC	miR166	siRNA21	miRBase21
Ppv3_Cluster_1068	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:6851440-6851621	+	963	6.60	AUUACUUUGGCAGCGCUGUGC	miR1034	siRNA21	Coruh_et_al_2015
ppt-MIR1034	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:6851462-6851606	+	963	6.60	AUUACUUUGGCAGCGCUGUGC	miR1034	siRNA21	miRBase21
ppt-b3.0r4-7520	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:6851494-6851579	+	963	6.60	AUUACUUUGGCAGCGCUGUGC	miR1034	siRNA21	ShortStack
ppt-MIR1074	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:8240339-8240468	+	3,945	27.05	CAACACAACGAACAACCCUGA	miR1074	siRNA21	miRBase21
ppt-b3.0r4-7542	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:8240351-8240530	+	3,946	27.06	CAACACAACGAACAACCCUGA	miR1074	siRNA21	ShortStack
Ppv3_Cluster_1073	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:8240351-8240457	+	3,945	27.05	CAACACAACGAACAACCCUGA	miR1074	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-7633	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:12326489-12326795	+	79	0.54	UCCUUCGGCUUUGAAUGAGCA		siRNA21	ShortStack
Ppv3_Cluster_1078	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:12326771-12326792	+	73	0.50	UCCUUCGGCUUUGAAUGAGCA		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_1081	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr17:15687654-15687675	-	46	0.32	CUGCCUUCUCCGUCUCCUCCU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-7793	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr18:3130252-3130455	+	119	0.82	CCCAGUGGCGUCGAAUUAUGUUC		siRNA21	ShortStack
ppt-b3.0r4-7817	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr18:4152474-4152709	-	221	1.52	AAAAUUUGGGUCGCUUUAUCA		siRNA21	ShortStack
Ppv3_Cluster_1091	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr18:4152479-4152510	-	210	1.44	AAAAUUUGGGUCGCUUUAUCA		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-7845	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr18:5564813-5565124	-	519	3.56	AUUAUGUCUAUACACUCACCC		siRNA21	ShortStack
Ppv3_Cluster_1097	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr18:5565096-5565117	-	474	3.25	AUUAUGUCUAUACACUCACCC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-7847	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr18:5640908-5642268	+	104,763	718.42	CUUGGACUGAAGGGAGCUCC	miR319	siRNA21	ShortStack
ppt-b3.0r4-7856	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr18:5905502-5905609	-	9,549	65.48	CAUCUUGGAGUACUGCAUCUU	miR1063	siRNA21	ShortStack
ppt-MIR2081	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr18:9091502-9091623	.	793	5.44	UCAGACACAUAACUCUAGCUA	miR2081	siRNA21	miRBase21
Ppv3_Cluster_1111	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr18:9091521-9091603	.	793	5.44	UCAGACACAUAACUCUAGCUA	miR2081	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-7911	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr18:9091521-9091609	.	793	5.44	UCAGACACAUAACUCUAGCUA	miR2081	siRNA21	ShortStack
ppt-b3.0r4-7916	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr18:9486230-9486386	+	885	6.07	UCCGAUGAUGAAACUGAGGCU		siRNA21	ShortStack
Ppv3_Cluster_1112	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr18:9486341-9486363	+	883	6.06	UCCGAUGAUGAAACUGAGGCU		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_1156	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr18:12889410-12889437	-	6	0.04	CAACCGGUGAAUGCAAUAACUGU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-8133	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr19:38081-38298	+	4,189	28.73	UUCGAUAAAAUGGCAGAAUCC		siRNA21	ShortStack
Ppv3_Cluster_1198	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr19:38089-38421	+	4,190	28.73	UUCGAUAAAAUGGCAGAAUCC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-8138	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr19:194245-194466	.	111	0.76	GACGAGGAGCGGACAGGGAGU		siRNA21	ShortStack
ppt-b3.0r4-8141	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr19:326292-326430	-	104	0.71	UUCGAGAUAACAUAUGACCCU		siRNA21	ShortStack
ppt-MIR1032	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr19:443502-443628	-	7,489	51.36	CAGGCAAGCCCCUGUCUGGGC	miR1032	siRNA21	miRBase21
ppt-b3.0r4-8142	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr19:443504-443809	-	7,494	51.39	CAGGCAAGCCCCUGUCUGGGC	miR1032	siRNA21	ShortStack
Ppv3_Cluster_1200	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr19:443513-443616	-	7,489	51.36	CAGGCAAGCCCCUGUCUGGGC	miR1032	siRNA21	Coruh_et_al_2015
Ppv3_Cluster_1201	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr19:2998851-2998872	+	75	0.51	UAUGUACCAGAAUUACCCUUC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-8229	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr19:4360871-4361105	-	66,831	458.30	GUUAGAGUGAUGUGGAAACCC	miR538	siRNA21	ShortStack
Ppv3_Cluster_1204	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr19:4360876-4361054	-	66,829	458.29	GUUAGAGUGAUGUGGAAACCC	miR538	siRNA21	Coruh_et_al_2015
ppt-MIR538a	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr19:4360876-4361054	-	66,829	458.29	GUUAGAGUGAUGUGGAAACCC	miR538	siRNA21	miRBase21
ppt-b3.0r4-8239	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr19:4620028-4620419	+	62,433	428.14	UGAGAAAGACUUGAGAGGACA	miR1026	siRNA21	ShortStack
ppt-b3.0r4-8268	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr19:6365319-6365493	.	121	0.83	AUUUUGAUGGCUAUGGUGUCC		siRNA21	ShortStack
Ppv3_Cluster_1207	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr19:6365373-6365603	.	185	1.27	AUUUUGAUGGCUAUGGUGUCC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_1217	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr20:582796-582817	.	25	0.17	ACGCCCAAAGAAUUCCCCUAC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-8584	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr20:2511813-2511910	+	229	1.57	CGUUUCACGUCGGGUUCACCA	miR894	siRNA21	ShortStack
ppt-b3.0r4-8606	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr20:4027654-4028520	.	95	0.65	ACCCCGGUCGGUAGAGUACGGC		siRNA21	ShortStack
Ppv3_Cluster_1229	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr20:8521400-8521454	-	1	0.01	AUGUAGAACGCAUGCCUUGUC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-8725	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr20:9742654-9742841	+	193	1.32	UAUAGUAUUGAUGUGAAUUUC		siRNA21	ShortStack
Ppv3_Cluster_1233	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr20:9742659-9742810	+	189	1.30	UAUAGUAUUGAUGUGAAUUUC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-8787	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr20:12004773-12005113	.	518	3.55	UGCUGUAUCGCAAGAAGGGGC		siRNA21	ShortStack
Ppv3_Cluster_1235	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr20:12004847-12004961	.	475	3.26	UGCUGUAUCGCAAGAAGGGGC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-8822	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr20:13887620-13887768	.	1,404	9.63	AGAAGAGAGAGAGCACAGCCC	miR529	siRNA21	ShortStack
ppt-MIR529d	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr20:13887655-13887790	.	1,403	9.62	AGAAGAGAGAGAGCACAGCCC	miR529	siRNA21	miRBase21
Ppv3_Cluster_1237	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr20:13887678-13888017	+	7,776	53.33	CGAAGAGAGAGAGCACAGCCC	miR529	siRNA21	Coruh_et_al_2015
Ppv3_Cluster_1244	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr21:1938262-1938474	+	25	0.17	AUUAUGAGAUCCACGAUAAAGAAA		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-8962	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr21:4835647-4837769	.	171	1.17	ACCGGAUGGACAAUUGAAUCU		siRNA21	ShortStack
ppt-b3.0r4-8963	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr21:4838381-4839729	.	98	0.67	UUAGCCGGUGCUUAUAUGAGC		siRNA21	ShortStack
ppt-b3.0r4-9050	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr21:9074853-9075049	-	452	3.10	UUAUUUUGAUAUUGAUUGGGU		siRNA21	ShortStack
Ppv3_Cluster_1257	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr21:9074864-9074956	-	415	2.85	UUAUUUUGAUAUUGAUUGGGU		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_1259	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr21:9416534-9416620	.	105	0.72	UGAUUUGAUUUCACAAGGGCU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-9118	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr21:9956365-9956841	-	96	0.66	UCCCAGUGAUCGUUAAAGCUC		siRNA21	ShortStack
ppt-b3.0r4-9161	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr21:12721429-12721806	-	12,198	83.65	UUGGCACCACUUUGGAGUACC		siRNA21	ShortStack
Ppv3_Cluster_1281	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr21:12721440-12721798	-	12,198	83.65	UUGGCACCACUUUGGAGUACC		siRNA21	Coruh_et_al_2015
Pp21SR1.1	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr21:12721442-12721803	-	12,198	83.65	UUGGCACCACUUUGGAGUACC		siRNA21	Cho_et_al_2008
ppt-b3.0r4-9190	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr21:13953363-13953417	-	387	2.65	AUUUUGGCACGCAUGGUGGAC		siRNA21	ShortStack
Ppv3_Cluster_1284	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr21:13953367-13953414	-	387	2.65	AUUUUGGCACGCAUGGUGGAC		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_1285	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr21:13953702-13953750	-	72	0.49	CCAUCAUGAGUGCCAAAAUAU		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-9230	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr22:1911597-1912559	+	5,177,417	35,504.66	CUUGGACUGAAGGGAGCUCCC	miR319	siRNA21	ShortStack
ppt-b3.0r4-9233	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr22:2033140-2033481	+	320,384	2,197.07	CCCCUAAAUGUUGGCAAGACC	miR904	siRNA21	ShortStack
ppt-b3.0r4-9282	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr22:4454668-4454868	.	96	0.66	UAAUGUUGCCUGACAAUAAGG		siRNA21	ShortStack
ppt-b3.0r4-9337	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr22:7579915-7580249	+	33,263	228.10	CCAUACAGGGAGUCAGACAGA	miR160	siRNA21	ShortStack
ppt-MIR1068	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr22:7773863-7774066	-	469	3.22	UGAAGGUCAACUCAGACGGGU	miR1068	siRNA21	miRBase21
ppt-b3.0r4-9348	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr22:7773870-7774044	-	469	3.22	UGAAGGUCAACUCAGACGGGU	miR1068	siRNA21	ShortStack
Ppv3_Cluster_1298	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr22:7773882-7774038	-	469	3.22	UGAAGGUCAACUCAGACGGGU	miR1068	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-9388	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr22:9278323-9278368	-	4,314	29.58	CAUCUUGGAGUACUGCAUCUU	miR1063	siRNA21	ShortStack
ppt-MIR1063e	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr22:9283849-9284084	+	568	3.90	GAUGCAGAACUGCAAGAAGC	miR1063	siRNA21	miRBase21
ppt-b3.0r4-9389	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr22:9283878-9284123	+	569	3.90	GAUGCAGAACUGCAAGAAGC	miR1063	siRNA21	ShortStack
ppt-b3.0r4-9420	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr22:10965635-10965989	-	338,297	2,319.91	GAGCUGUUCAGACUAUGAGAA	miR533	siRNA21	ShortStack
ppt-b3.0r4-9427	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr22:11454038-11454355	+	5,207	35.71	AAUUUGAAGCAUGAUGUCAAG	miR1217	siRNA21	ShortStack
ppt-b3.0r4-9445	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr22:13156201-13156282	-	276	1.89	CGUUUCACGUCGGGUUCACCA	miR894	siRNA21	ShortStack
ppt-b3.0r4-9500	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:1247434-1247616	+	6,955	47.70	AGCCGCAGUUUGGCAUGAAGC	miR536	siRNA21	ShortStack
Ppv3_Cluster_1344	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:1247547-1247574	+	6,951	47.67	AGCCGCAGUUUGGCAUGAAGC	miR536	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-9502	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:1253432-1253613	-	757	5.19	ACUUGGAAGUUGGUGAGAAUC		siRNA21	ShortStack
Ppv3_Cluster_1346	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:1253452-1253525	-	756	5.18	ACUUGGAAGUUGGUGAGAAUC		siRNA21	Coruh_et_al_2015
Pp21SR26.1	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:1253454-1253524	-	755	5.18	ACUUGGAAGUUGGUGAGAAUC		siRNA21	Cho_et_al_2008
ppt-b3.0r4-9503	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:1254202-1254773	-	4,056	27.81	ACUCUUGGGCACAUUAUACAAAUG		siRNA21	ShortStack
Ppv3_Cluster_1347	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:1254206-1254277	-	4,009	27.49	ACUCUUGGGCACAUUAUACAAAUG		siRNA21	Coruh_et_al_2015
Pp21SR15.1	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:1254207-1254704	-	4,054	27.80	ACUCUUGGGCACAUUAUACAAAUG		siRNA21	Cho_et_al_2008
ppt-b3.0r4-9511	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:2550492-2550727	-	4,271	29.29	AGCCUCAGUUUGGCACGAAGC	miR536	siRNA21	ShortStack
Ppv3_Cluster_1350	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:2550561-2550591	-	4,256	29.19	AGCCUCAGUUUGGCACGAAGC	miR536	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-9514	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:2735565-2735806	-	137	0.94	GUUGGGAUAAAAAGAACAAUA	miR11330	siRNA21	ShortStack
Ppv3_Cluster_1351	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:2735637-2735728	-	133	0.91	GUUGGGAUAAAAAGAACAAUA	miR11330	siRNA21	Coruh_et_al_2015
Ppv3_Cluster_1354	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:6315027-6315077	-	37	0.25	UGAGUCCGGCGCUGAAGAAGC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-9633	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:7833912-7834035	.	121	0.83	UCUGGUGGUUCUUCUGAAUGC		siRNA21	ShortStack
Ppv3_Cluster_1357	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:7833922-7834033	.	121	0.83	CCAUGGCUCUGGUGGUUCUUC		siRNA21	Coruh_et_al_2015
ppt-MIR529e	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:8765009-8765130	.	306	2.10	AGAAGAGAGAGAGCACAGCCC	miR529	siRNA21	miRBase21
ppt-b3.0r4-9648	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:8765033-8765120	.	306	2.10	AGAAGAGAGAGAGCACAGCCC	miR529	siRNA21	ShortStack
ppt-b3.0r4-9728	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:12204267-12204373	+	288	1.98	AGACGAUAUGCCACUGGAUUG		siRNA21	ShortStack
ppt-b3.0r4-9758	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:13738826-13739083	+	127	0.87	GGACUCGGGCAGGGAGAAAAC		siRNA21	ShortStack
Ppv3_Cluster_1366	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr23:13738826-13738860	+	93	0.64	GGACUCGGGCAGGGAGAAAAC		siRNA21	Coruh_et_al_2015
ppt-MIR529f	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr24:1643882-1644003	.	281	1.93	AGAAGAGAGAGAGCACAGCCC	miR529	siRNA21	miRBase21
ppt-b3.0r4-9819	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr24:1643906-1643990	.	281	1.93	AGAAGAGAGAGAGCACAGCCC	miR529	siRNA21	ShortStack
Ppv3_Cluster_1369	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr24:1643907-1643930	.	217	1.49	AGAAGAGAGAGAGCACAGCCC	miR529	siRNA21	Coruh_et_al_2015
Ppv3_Cluster_1395	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr24:4035148-4035382	+	2,159	14.81	AGGGAUGGACGUAUACGAGCC	miR1077	siRNA21	Coruh_et_al_2015
ppt-MIR1077	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr24:4035188-4035339	+	2,157	14.79	AGGGAUGGACGUAUACGAGCC	miR1077	siRNA21	miRBase21
ppt-b3.0r4-9884	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr24:4035213-4035393	+	2,159	14.81	AGGGAUGGACGUAUACGAGCC	miR1077	siRNA21	ShortStack
Ppv3_Cluster_1397	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr24:5312915-5312937	+	6,856	47.02	AGCCGCAGUUUGGCACGAAGC	miR536	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-9944	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr24:6522645-6522699	+	346	2.37	CAUCGCUCGUACACAACGAUC		siRNA21	ShortStack
Ppv3_Cluster_1401	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr24:6522645-6522684	+	346	2.37	CAUCGCUCGUACACAACGAUC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-10277	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr25:9154715-9154966	-	86	0.59	UGCGUUGUCUCAGGUGGGAUC		siRNA21	ShortStack
Ppv3_Cluster_1421	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr25:9154860-9154888	-	74	0.51	UGCGUUGUCUCAGGUGGGAUC		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-10412	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr26:4641827-4642133	-	728	4.99	CGUUUUGUGAGCUAAGAAGGU	miR1035	siRNA21	ShortStack
ppt-b3.0r4-10434	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr26:5159889-5160300	.	525	3.60	AAAUACAUGUCGGCUAAGAUG		siRNA21	ShortStack
Ppv3_Cluster_1428	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr26:5159971-5160076	.	511	3.50	AAAUACAUGUCGGCUAAGAUG		siRNA21	Coruh_et_al_2015
ppt-b3.0r4-10435	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr26:5160832-5161160	.	163	1.12	CUACAUGUAUUUGAAAGGACG		siRNA21	ShortStack
Ppv3_Cluster_1429	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr26:5160833-5160923	.	149	1.02	CUACAUGUAUUUGAAAGGACG		siRNA21	Coruh_et_al_2015
Ppv3_Cluster_1434	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr26:6025729-6025986	.	821	5.63	AUCGAUCAUCGACUUGGGGGU		siRNA21	Coruh_et_al_2015
ppt-MIR166h	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr27:682285-682410	-	2,297	15.75	UCGGACCAGGCUUCAUUCCCC	miR166	siRNA21	miRBase21
Ppv3_Cluster_1450	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr27:682296-682398	-	2,297	15.75	UCGGACCAGGCUUCAUUCCCC	miR166	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-10562	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr27:682310-682379	-	2,297	15.75	UCGGACCAGGCUUCAUUCCCC	miR166	siRNA21	ShortStack
ppt-MIR1066	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr27:2751812-2751930	.	2,714	18.61	CGUACCCCGCUCAGUAACAUG	miR1066	siRNA21	miRBase21
ppt-b3.0r4-10624	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr27:2751827-2752051	.	2,716	18.63	CGUACCCCGCUCAGUAACAUG	miR1066	siRNA21	ShortStack
Ppv3_Cluster_1454	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr27:2751829-2751911	.	2,714	18.61	CGUACCCCGCUCAGUAACAUG	miR1066	siRNA21	Coruh_et_al_2015
ppt-b3.0r4-10709	Physcomitrella patens (Spreading Earthmoss) 3.0	Chr27:5078118-5078342	+	287	1.97	CAGGGAACCACUUUCAACAAC		siRNA21	ShortStack