| Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
|---|
| Ppv3_Cluster_24 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr01:9704608-9704655 | . | 74 | 0.51 | UCGAAAUCAGCGCUGAAAUC | | siRNA20 | Coruh_et_al_2015 |
| ppt-b3.0r4-1621 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr03:9993097-9993162 | + | 99 | 0.68 | GUGAGAUGCAGAUGCAGAGG | miR1030 | siRNA20 | ShortStack |
| ppt-b3.0r4-1847 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr03:17740588-17740617 | - | 244 | 1.67 | UAAGGAUGAAAAACCUCUCU | | siRNA20 | ShortStack |
| Ppv3_Cluster_287 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr03:17740593-17740613 | - | 244 | 1.67 | UAAGGAUGAAAAACCUCUCU | | siRNA20 | Coruh_et_al_2015 |
| ppt-b3.0r4-1875 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr03:18588655-18588680 | + | 87 | 0.60 | UGCAAUGAUGAGAACUGAUU | | siRNA20 | ShortStack |
| ppt-b3.0r4-2680 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr05:4003218-4003455 | + | 52,114 | 357.38 | AUCGGAAGAAGGCUUCUACC | | siRNA20 | ShortStack |
| Ppv3_Cluster_438 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr05:4003405-4003579 | + | 52,106 | 357.32 | AUCGGAAGAAGGCUUCUACC | | siRNA20 | Coruh_et_al_2015 |
| Ppv3_Cluster_439 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr05:4010966-4011155 | - | 51,905 | 355.94 | AUCGGAAGAAGGCUUCUACC | | siRNA20 | Coruh_et_al_2015 |
| ppt-b3.0r4-2684 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr05:4011096-4011265 | - | 51,912 | 355.99 | AUCGGAAGAAGGCUUCUACC | | siRNA20 | ShortStack |
| ppt-b3.0r4-2826 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr05:11330040-11330062 | - | 127 | 0.87 | GGGAUUGUAGUUCAAUUAAA | | siRNA20 | ShortStack |
| ppt-b3.0r4-2917 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr05:15431447-15431532 | + | 81 | 0.56 | AACGGGAGAAUGCGGACUCU | | siRNA20 | ShortStack |
| Ppv3_Cluster_448 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr05:15431471-15431491 | + | 78 | 0.54 | AACGGGAGAAUGCGGACUCU | | siRNA20 | Coruh_et_al_2015 |
| Ppv3_Cluster_470 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr06:5181638-5181701 | - | 14 | 0.10 | CAAUUGGCUCUUUGAACCCG | | siRNA20 | Coruh_et_al_2015 |
| ppt-b3.0r4-3646 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr07:9879905-9880987 | + | 104,971 | 719.85 | CGCUGUCCAUUCUGAGCAUU | miR390 | siRNA20 | ShortStack |
| Ppv3_Cluster_512 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr07:13357127-13357268 | - | 1 | 0.01 | AGCAACUCUUUGUCGUGGAG | | siRNA20 | Coruh_et_al_2015 |
| Ppv3_Cluster_552 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr08:4970187-4970213 | - | 181 | 1.24 | CCUAGAAAUCGACCUGCACC | | siRNA20 | Coruh_et_al_2015 |
| ppt-b3.0r4-4217 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr09:1463333-1463426 | + | 200 | 1.37 | AGCAGUAGAGUUCUGUGCCU | | siRNA20 | ShortStack |
| Ppv3_Cluster_577 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr09:1463394-1463418 | + | 179 | 1.23 | AGCAGUAGAGUUCUGUGCCU | | siRNA20 | Coruh_et_al_2015 |
| Ppv3_Cluster_581 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr09:3156841-3156861 | + | 55 | 0.38 | AUCCUUGAUUCAAUGCCUAG | | siRNA20 | Coruh_et_al_2015 |
| ppt-b3.0r4-5138 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr11:8047392-8047507 | + | 424 | 2.91 | GUUUCACGUCGGGUUCACCA | miR894 | siRNA20 | ShortStack |
| ppt-b3.0r4-5229 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr11:12120680-12120764 | - | 110 | 0.75 | UGGCGGAGGGAUGAACGUUC | | siRNA20 | ShortStack |
| Ppv3_Cluster_730 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr11:12120723-12120764 | - | 94 | 0.65 | UGGCGGAGGGAUGAACGUUC | | siRNA20 | Coruh_et_al_2015 |
| ppt-b3.0r4-5658 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr12:11991406-11991475 | - | 189 | 1.30 | CUUUGUUGGAACUGGGGAGU | | siRNA20 | ShortStack |
| Ppv3_Cluster_767 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr12:11991407-11991475 | - | 189 | 1.30 | CUUUGUUGGAACUGGGGAGU | | siRNA20 | Coruh_et_al_2015 |
| ppt-b3.0r4-5681 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr12:12886015-12886084 | - | 240 | 1.65 | AUCUCUCAGUGGAAGCACCA | | siRNA20 | ShortStack |
| Ppv3_Cluster_789 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr13:3959641-3959668 | + | 4 | 0.03 | AGAUGAAUUGGACAAAGACA | | siRNA20 | Coruh_et_al_2015 |
| Ppv3_Cluster_823 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr13:7228856-7229242 | + | 5 | 0.03 | ACGGCUGUCAAAGAAGACAC | | siRNA20 | Coruh_et_al_2015 |
| Ppv3_Cluster_877 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr14:3163238-3163257 | + | 48 | 0.33 | ACCCUUAACUCGAUGUACAG | | siRNA20 | Coruh_et_al_2015 |
| Ppv3_Cluster_959 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr15:6237470-6237781 | + | 6 | 0.04 | GUAGAGUGCCAAUAAACCUU | | siRNA20 | Coruh_et_al_2015 |
| Ppv3_Cluster_1094 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr18:5038929-5038949 | - | 68 | 0.47 | UCCUUUGACUAUACUCUCAG | | siRNA20 | Coruh_et_al_2015 |
| ppt-b3.0r4-8227 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr19:4255679-4256186 | - | 120,125 | 823.77 | CUUGGACUGAAGGGAGCUCC | miR319 | siRNA20 | ShortStack |
| ppt-b3.0r4-8322 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr19:10199064-10199756 | + | 7,019 | 48.13 | GAUGCAGAACUGCAAGAAGU | miR1063 | siRNA20 | ShortStack |
| ppt-MIR1063g | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr19:10199265-10199575 | + | 6,844 | 46.93 | GAUGCAGAACUGCAAGAAGU | miR1063 | siRNA20 | miRBase21 |
| ppt-b3.0r4-8326 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr19:10500151-10500185 | - | 129 | 0.89 | UUCUUUGACUCCACGUGCAG | | siRNA20 | ShortStack |
| ppt-b3.0r4-8883 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr21:478736-478761 | + | 430 | 2.95 | CGAUUCACGUCGGGUUCACCA | miR894 | siRNA20 | ShortStack |
| ppt-b3.0r4-9016 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr21:6945755-6945779 | + | 141 | 0.97 | AGAGUUUGGACACACUGGCU | | siRNA20 | ShortStack |
| Ppv3_Cluster_1253 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr21:6945757-6945777 | + | 141 | 0.97 | AGAGUUUGGACACACUGGCU | | siRNA20 | Coruh_et_al_2015 |
| ppt-MIR1063d | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr22:9278038-9278393 | - | 8,283 | 56.80 | GAUGCAGAACUACAAGAAGC | miR1063 | siRNA20 | miRBase21 |
| ppt-b3.0r4-9387 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr22:9278062-9278114 | - | 3,969 | 27.22 | GAUGCAGAACUACAAGAAGC | miR1063 | siRNA20 | ShortStack |
| Ppv3_Cluster_1328 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr22:9278064-9278092 | - | 3,969 | 27.22 | GAUGCAGAACUACAAGAAGC | miR1063 | siRNA20 | Coruh_et_al_2015 |
| ppt-b3.0r4-9446 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr22:13281489-13281510 | - | 389 | 2.67 | CGAUUCACGUCGGGUUCACCA | miR894 | siRNA20 | ShortStack |
| ppt-b3.0r4-9975 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr24:8247099-8247186 | - | 2,753 | 18.88 | CACACACAAAAAAAACUGCU | | siRNA20 | ShortStack |
| Ppv3_Cluster_1408 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr24:12507768-12507799 | + | 1 | 0.01 | AGGAAAUCGCUCAGUAGCAG | | siRNA20 | Coruh_et_al_2015 |
| ppt-b3.0r4-10605 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr27:1955940-1955995 | - | 308 | 2.11 | CACACACAAAAAAAAAACUG | | siRNA20 | ShortStack |
Data from Lunardon et al. (2020)