| Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
|---|
| Ppv3_Cluster_11 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr01:4328143-4328163 | - | 997 | 6.84 | AUGAAGGUCUGCAUCGUAGC | miR902 | nearMIRNA | Coruh_et_al_2015 |
| Ppv3_Cluster_16 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr01:7516654-7516713 | + | 142 | 0.97 | CGUGUUGAGGCUUGUUAAAG | | nearMIRNA | Coruh_et_al_2015 |
| ppt-MIR1024a | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr01:15203931-15204092 | - | 27,635 | 189.51 | UCUGGUUGGAUUGUAGGCCU | miR1024 | nearMIRNA | miRBase21 |
| Ppv3_Cluster_79 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr01:15203945-15204076 | - | 27,633 | 189.50 | UCUGGUUGGAUUGUAGGCCU | miR1024 | nearMIRNA | Coruh_et_al_2015 |
| ppt-b3.0r4-377 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr01:15203952-15204101 | - | 27,635 | 189.51 | UCUGGUUGGAUUGUAGGCCU | miR1024 | nearMIRNA | ShortStack |
| ppt-b3.0r4-815 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr02:1280237-1280298 | - | 10,523 | 72.16 | UCUUAGAUCUACAAUGCCUCU | miR1028 | nearMIRNA | ShortStack |
| ppt-MIR1024b | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr02:12910626-12910749 | - | 294,211 | 2,017.58 | UCUGGUUGGAUUGUAGGCCU | miR1024 | nearMIRNA | miRBase21 |
| ppt-b3.0r4-1086 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr02:12910639-12910875 | - | 294,222 | 2,017.66 | UCUGGUUGGAUUGUAGGCCU | miR1024 | nearMIRNA | ShortStack |
| Ppv3_Cluster_126 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr02:12910642-12910759 | - | 294,211 | 2,017.58 | UCUGGUUGGAUUGUAGGCCU | miR1024 | nearMIRNA | Coruh_et_al_2015 |
| ppt-b3.0r4-1451 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr03:1701959-1701992 | - | 104 | 0.71 | UACCUUGACAAAUGUGACUAG | | nearMIRNA | ShortStack |
| Ppv3_Cluster_203 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr03:1701960-1701980 | - | 104 | 0.71 | UACCUUGACAAAUGUGACUAG | | nearMIRNA | Coruh_et_al_2015 |
| ppt-b3.0r4-1673 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr03:11924038-11924081 | + | 1,628 | 11.16 | UAUACUGAUUUGUGUGGGUUUCAG | | nearMIRNA | ShortStack |
| Ppv3_Cluster_237 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr03:12042029-12042052 | + | 52 | 0.36 | GAAAUGUAGAAGCAGGUUUUG | | nearMIRNA | Coruh_et_al_2015 |
| Ppv3_Cluster_241 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr03:15367178-15367203 | - | 90 | 0.62 | UAGGACACUUUGGAUAUAAUAAG | | nearMIRNA | Coruh_et_al_2015 |
| Ppv3_Cluster_295 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr03:21620476-21620497 | + | 56 | 0.38 | UGUCCAGUCUCUCCACGGCCCG | miR1042 | nearMIRNA | Coruh_et_al_2015 |
| Ppv3_Cluster_411 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr04:13020738-13020765 | + | 35 | 0.24 | AUACCAUAAAAUAGUAAGGCC | | nearMIRNA | Coruh_et_al_2015 |
| Ppv3_Cluster_418 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr04:17155948-17156001 | + | 6,627 | 45.45 | UCUGCAUCUGCACCUGCACCA | miR1030 | nearMIRNA | Coruh_et_al_2015 |
| Ppv3_Cluster_488 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr06:18848889-18849130 | + | 4,112 | 28.20 | UUUGGAUGAUUCAAUUGUGAU | miR1078 | nearMIRNA | Coruh_et_al_2015 |
| ppt-MIR1078 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr06:18848953-18849063 | + | 4,108 | 28.17 | UUUGGAUGAUUCAAUUGUGAU | miR1078 | nearMIRNA | miRBase21 |
| ppt-b3.0r4-3409 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr06:18848981-18849151 | + | 4,112 | 28.20 | UUUGGAUGAUUCAAUUGUGAU | miR1078 | nearMIRNA | ShortStack |
| Ppv3_Cluster_597 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr09:17216066-17216086 | + | 59 | 0.41 | UGCGAGCACUUAUUGAAGUUC | | nearMIRNA | Coruh_et_al_2015 |
| ppt-b3.0r4-4541 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr10:1725886-1725937 | + | 1,079 | 7.40 | GUGCGGGUUCUUAUGCAGAAC | miR1030 | nearMIRNA | ShortStack |
| ppt-MIR1222e | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr10:12476527-12476655 | + | 8 | 0.06 | UGCUGGUGAGCUCCUUCAAGC | miR1222 | nearMIRNA | miRBase21 |
| ppt-MIR902e | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr11:9177888-9178020 | + | 6,866 | 47.08 | ACGAAGGUCUGCAUCAUAGU | miR902 | nearMIRNA | miRBase21 |
| Ppv3_Cluster_708 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr11:9177902-9178009 | + | 6,866 | 47.08 | ACGAAGGUCUGCAUCAUAGU | miR902 | nearMIRNA | Coruh_et_al_2015 |
| ppt-b3.0r4-5157 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr11:9177916-9178124 | + | 6,869 | 47.11 | ACGAAGGUCUGCAUCAUAGU | miR902 | nearMIRNA | ShortStack |
| ppt-b3.0r4-5214 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr11:11452727-11452757 | - | 4,836 | 33.16 | CAUCUUGGAGUACUGCAUCUU | miR1063 | nearMIRNA | ShortStack |
| ppt-MIR1051 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr12:5498625-5498821 | + | 194 | 1.33 | UUCCUGUCUACUUGAAGCCAC | miR1051 | nearMIRNA | miRBase21 |
| ppt-b3.0r4-5490 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr12:5498641-5498828 | + | 194 | 1.33 | UUCCUGUCUACUUGAAGCCAC | miR1051 | nearMIRNA | ShortStack |
| Ppv3_Cluster_747 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr12:5498656-5498791 | + | 193 | 1.32 | UUCCUGUCUACUUGAAGCCAC | miR1051 | nearMIRNA | Coruh_et_al_2015 |
| ppt-MIR536a | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr12:5501130-5501328 | - | 369,005 | 2,530.49 | UCGUGCCAAGCUGUGUGCAACC | miR536 | nearMIRNA | miRBase21 |
| ppt-b3.0r4-5511 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr12:6377735-6377755 | + | 90 | 0.62 | CUGGAAGUCUUUGUUGAAUU | | nearMIRNA | ShortStack |
| ppt-b3.0r4-5857 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr13:4841430-4841697 | + | 87,666 | 601.18 | UUUUAGUUUUGUUGUGGGCU | miR1025 | nearMIRNA | ShortStack |
| ppt-MIR1025 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr13:4841439-4841648 | + | 87,664 | 601.17 | UUUUAGUUUUGUUGUGGGCU | miR1025 | nearMIRNA | miRBase21 |
| Ppv3_Cluster_803 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr13:4841463-4841625 | + | 87,664 | 601.17 | UUUUAGUUUUGUUGUGGGCU | miR1025 | nearMIRNA | Coruh_et_al_2015 |
| Ppv3_Cluster_804 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr13:5191336-5191359 | - | 36 | 0.25 | ACGGUGAUUGAACUUAAGGUGCC | | nearMIRNA | Coruh_et_al_2015 |
| ppt-b3.0r4-5899 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr13:7045428-7045545 | - | 124 | 0.85 | AUUCCAAAUUUUAUCAUCACAAUG | | nearMIRNA | ShortStack |
| Ppv3_Cluster_821 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr13:7045432-7045478 | - | 102 | 0.70 | AUUCCAAAUUUUAUCAUCACAAUG | | nearMIRNA | Coruh_et_al_2015 |
| ppt-MIR1075 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr13:8730372-8730513 | - | 268 | 1.84 | UGUUUCAGUCAUGGUUUCUAC | miR1075 | nearMIRNA | miRBase21 |
| ppt-b3.0r4-5927 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr13:8730385-8730642 | - | 276 | 1.89 | UGUUUCAGUCAUGGUUUCUAC | miR1075 | nearMIRNA | ShortStack |
| Ppv3_Cluster_825 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr13:8730397-8730487 | - | 268 | 1.84 | UGUUUCAGUCAUGGUUUCUAC | miR1075 | nearMIRNA | Coruh_et_al_2015 |
| Ppv3_Cluster_841 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr13:13778936-13778959 | - | 533 | 3.66 | UCUGCAUCUGCACCUGCACCA | miR1030 | nearMIRNA | Coruh_et_al_2015 |
| ppt-b3.0r4-6151 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr14:495775-495814 | - | 3,409 | 23.38 | GUGCGGGUUCUUAUGCAGAGC | miR1030 | nearMIRNA | ShortStack |
| ppt-b3.0r4-6152 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr14:495892-495970 | - | 6,700 | 45.95 | UCUGCAUCUGCACCUGCACCA | miR1030 | nearMIRNA | ShortStack |
| ppt-MIR898b | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr14:2423834-2424053 | + | 10,247 | 70.27 | UUGCUGUGCACUACUUAGUACG | miR898 | nearMIRNA | miRBase21 |
| Ppv3_Cluster_876 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr14:2423866-2424017 | + | 10,245 | 70.26 | UUGCUGUGCACUACUUAGUACG | miR898 | nearMIRNA | Coruh_et_al_2015 |
| ppt-b3.0r4-6488 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr14:14350675-14350970 | + | 186 | 1.28 | CGGGAGAUCUGUCGCGAUGCC | miR11326 | nearMIRNA | ShortStack |
| Ppv3_Cluster_894 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr14:14350804-14350952 | + | 181 | 1.24 | CGGGAGAUCUGUCGCGAUGCC | miR11326 | nearMIRNA | Coruh_et_al_2015 |
| Ppv3_Cluster_943 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr15:3622219-3622240 | - | 43 | 0.30 | UUUCUGAAGCGUUUUUCCAUC | | nearMIRNA | Coruh_et_al_2015 |
| ppt-MIR1223d | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr16:14296041-14296174 | + | 49 | 0.34 | UUGUAGAGUCAUACACCUCUG | miR1223 | nearMIRNA | miRBase21 |
| Ppv3_Cluster_1045 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr16:14296125-14296145 | + | 49 | 0.34 | UUGUAGAGUCAUACACCUCUG | miR1223 | nearMIRNA | Coruh_et_al_2015 |
| Ppv3_Cluster_1069 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr17:6852049-6852229 | + | 258 | 1.77 | AUUACUUUGGCAGCGUUGUGC | miR1034 | nearMIRNA | Coruh_et_al_2015 |
| ppt-b3.0r4-7521 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr17:6852051-6852232 | + | 258 | 1.77 | AUUACUUUGGCAGCGUUGUGC | miR1034 | nearMIRNA | ShortStack |
| ppt-MIR1064 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr17:6870862-6870976 | - | 88 | 0.60 | CAUUCUGAGAAUAAUCAUCCGA | miR1064 | nearMIRNA | miRBase21 |
| Ppv3_Cluster_1070 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr17:6870926-6870947 | - | 87 | 0.60 | CAUUCUGAGAAUAAUCAUCCGA | miR1064 | nearMIRNA | Coruh_et_al_2015 |
| Ppv3_Cluster_1216 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr19:13800347-13800367 | - | 95 | 0.65 | CCAUGCAGGGAGUCAGACAGA | miR160 | nearMIRNA | Coruh_et_al_2015 |
| ppt-MIR902i | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr21:5057311-5057430 | + | 19 | 0.13 | UUAUGAUGUAGAUUCUUCAUC | miR902 | nearMIRNA | miRBase21 |
| ppt-b3.0r4-8977 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr21:5595048-5595187 | + | 260 | 1.78 | UUGGACAUGUCAGACAAGCCC | | nearMIRNA | ShortStack |
| Ppv3_Cluster_1250 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr21:5595105-5595126 | + | 257 | 1.76 | UUGGACAUGUCAGACAAGCCC | | nearMIRNA | Coruh_et_al_2015 |
| ppt-MIR902c | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr21:13954620-13954753 | - | 50,977 | 349.58 | ACGAAGGUCUGCAUCAUAGU | miR902 | nearMIRNA | miRBase21 |
| Ppv3_Cluster_1286 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr21:13954636-13954735 | - | 50,977 | 349.58 | ACGAAGGUCUGCAUCAUAGU | miR902 | nearMIRNA | Coruh_et_al_2015 |
| ppt-b3.0r4-9191 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr21:13954646-13954730 | - | 50,977 | 349.58 | ACGAAGGUCUGCAUCAUAGU | miR902 | nearMIRNA | ShortStack |
| Ppv3_Cluster_1356 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr23:7188944-7188967 | + | 29 | 0.20 | GGCGCGACACUGAGGCUUGUGAGC | | nearMIRNA | Coruh_et_al_2015 |
| Ppv3_Cluster_1362 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr23:8765021-8765073 | + | 187 | 1.28 | AGAAGAGAGAGAGCACAGCCC | miR529 | nearMIRNA | Coruh_et_al_2015 |
| Ppv3_Cluster_1423 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr26:3620222-3620242 | + | 44 | 0.30 | UAUUUAGUAAAUGCUUGGGUC | | nearMIRNA | Coruh_et_al_2015 |
| ppt-b3.0r4-10405 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr26:4349178-4349214 | - | 958 | 6.57 | UCUGCAUCUGCACCUGCACCA | miR1030 | nearMIRNA | ShortStack |
| Ppv3_Cluster_1457 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr27:5077750-5077770 | + | 61 | 0.42 | UGCUGAAUGUGGUUUCCUGUU | | nearMIRNA | Coruh_et_al_2015 |
| Ppv3_Cluster_1458 | Physcomitrella patens (Spreading Earthmoss) 3.0 | Chr27:5078317-5078341 | + | 280 | 1.92 | CAGGGAACCACUUUCAACAAC | | nearMIRNA | Coruh_et_al_2015 |
Data from Lunardon et al. (2020)