Data from Lunardon et al. (2020)

Annotations viewer

Genome

Gossypium hirsutum (Upland Cotton) genome build 1.1 (ghr-b1.1)

Version v1.1 of Gossypium hirsutum cv. Texas Marker-1 from CottonGen

Locus type

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Annotation source

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Warning: Search returned more than 1,000 results. Only the first 1,000 are shown below. Use the buttons above to download the full results, or refine your search criteria.

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
ghr-b1.1r1-186	Gossypium hirsutum (Upland Cotton) 1.1	A01:1081754-1082175	.	250	0.27	AUGAUAUAUGGGAACGGUUUG		siRNA21	ShortStack
ghr-b1.1r1-404	Gossypium hirsutum (Upland Cotton) 1.1	A01:2152000-2152436	.	730	0.79	CAACUGAUGGAGCAGCGUGCA		siRNA21	ShortStack
ghr-b1.1r1-436	Gossypium hirsutum (Upland Cotton) 1.1	A01:2268500-2268641	.	671	0.73	CUUGUGGAAGAUUGUGGGUUG		siRNA21	ShortStack
ghr-b1.1r1-437	Gossypium hirsutum (Upland Cotton) 1.1	A01:2268863-2269239	+	150,981	163.09	UGUUGGGCAUGUAAAAGGCAU		siRNA21	ShortStack
ghr-b1.1r1-499	Gossypium hirsutum (Upland Cotton) 1.1	A01:2583818-2584040	.	1,026	1.11	UAGCUCUGCAAAAAUUUCUGC		siRNA21	ShortStack
ghr-b1.1r1-591	Gossypium hirsutum (Upland Cotton) 1.1	A01:3399087-3399344	.	4,556	4.92	UCCGAGGUCGUUCAUAUACUC		siRNA21	ShortStack
ghr-b1.1r1-601	Gossypium hirsutum (Upland Cotton) 1.1	A01:3658779-3659074	+	2,170	2.34	CUUUCGAUCUCACUUUGAUCC		siRNA21	ShortStack
ghr-b1.1r1-623	Gossypium hirsutum (Upland Cotton) 1.1	A01:3745967-3746141	.	640	0.69	AUAAUCUGUAGCCGGUUUUCU		siRNA21	ShortStack
ghr-b1.1r1-639	Gossypium hirsutum (Upland Cotton) 1.1	A01:3936655-3937901	.	2,378	2.57	UGUAAAUCUAUAGGCUGUCAU		siRNA21	ShortStack
ghr-b1.1r1-727	Gossypium hirsutum (Upland Cotton) 1.1	A01:5087135-5087158	-	87	0.09	CCAGAAUUCCUUUCGUAUUGC		siRNA21	ShortStack
ghr-b1.1r1-818	Gossypium hirsutum (Upland Cotton) 1.1	A01:6065262-6065330	.	484	0.52	ACAAGCUGUUGGAGUUGUGAGU		siRNA21	ShortStack
ghr-b1.1r1-825	Gossypium hirsutum (Upland Cotton) 1.1	A01:6153412-6153448	+	387	0.42	CCGAACAUUAGUCAGAACUCU		siRNA21	ShortStack
ghr-b1.1r1-856	Gossypium hirsutum (Upland Cotton) 1.1	A01:6357468-6357551	-	613	0.66	AAAUUUUUCAUCUUCACUGUU		siRNA21	ShortStack
ghr-b1.1r1-885	Gossypium hirsutum (Upland Cotton) 1.1	A01:6598087-6598621	.	666	0.72	UGUGGAACUGAUACGGCUUAU		siRNA21	ShortStack
ghr-b1.1r1-899	Gossypium hirsutum (Upland Cotton) 1.1	A01:6693379-6693647	+	631	0.68	UUGCAGUAGAUCAAACCAGGG		siRNA21	ShortStack
ghr-b1.1r1-900	Gossypium hirsutum (Upland Cotton) 1.1	A01:6713968-6714220	.	194	0.21	UGUGUUACAGAAGGACGAGUU		siRNA21	ShortStack
ghr-b1.1r1-1064	Gossypium hirsutum (Upland Cotton) 1.1	A01:8214431-8214545	-	4,419	4.77	GUGGAUUAAAAUUUUGGUUGG		siRNA21	ShortStack
ghr-b1.1r1-1109	Gossypium hirsutum (Upland Cotton) 1.1	A01:9074431-9077153	.	7,503	8.11	AUGCAGUGAUUUGGUUGACGG		siRNA21	ShortStack
ghr-b1.1r1-1161	Gossypium hirsutum (Upland Cotton) 1.1	A01:9900630-9900938	.	320	0.35	ACAUGCAAAAGACUCUGGCUC		siRNA21	ShortStack
ghr-b1.1r1-1227	Gossypium hirsutum (Upland Cotton) 1.1	A01:10752574-10752708	.	264	0.29	CUUGGCACACAUCGAAGAACGA		siRNA21	ShortStack
ghr-b1.1r1-1229	Gossypium hirsutum (Upland Cotton) 1.1	A01:10753486-10753685	.	524	0.57	UAUUCUUCCGGAGAGACUGCA		siRNA21	ShortStack
ghr-b1.1r1-1298	Gossypium hirsutum (Upland Cotton) 1.1	A01:11411158-11411413	-	6,962	7.52	UUUUACUGACGUGGACAAAAU		siRNA21	ShortStack
ghr-b1.1r1-1322	Gossypium hirsutum (Upland Cotton) 1.1	A01:11728027-11728789	+	28,498	30.78	UCCAUAUUUCACUAUCUCUUA	miR8746	siRNA21	ShortStack
ghr-b1.1r1-1360	Gossypium hirsutum (Upland Cotton) 1.1	A01:12079794-12079859	+	1,433	1.55	UCGAUAUUGUUCUCUUUGGGC		siRNA21	ShortStack
ghr-b1.1r1-1361	Gossypium hirsutum (Upland Cotton) 1.1	A01:12079945-12080037	+	1,310	1.42	CAAAGAGAACAAUACUGGUAU		siRNA21	ShortStack
ghr-b1.1r1-1550	Gossypium hirsutum (Upland Cotton) 1.1	A01:16425924-16426174	.	887	0.96	UUUGAGUGGAGGUGGUCUGUC		siRNA21	ShortStack
ghr-b1.1r1-1633	Gossypium hirsutum (Upland Cotton) 1.1	A01:18092334-18092662	.	238	0.26	UGGGACGACAUCAAAGCAGUA		siRNA21	ShortStack
ghr-b1.1r1-2104	Gossypium hirsutum (Upland Cotton) 1.1	A01:39076684-39076840	.	337	0.36	AAUGCUGGGUUGGACAAGCAA		siRNA21	ShortStack
ghr-b1.1r1-2105	Gossypium hirsutum (Upland Cotton) 1.1	A01:39077341-39077475	-	572	0.62	UUCCGGAGAGACUGCAUUUAU		siRNA21	ShortStack
ghr-b1.1r1-2169	Gossypium hirsutum (Upland Cotton) 1.1	A01:42607432-42607559	.	2,112	2.28	CAUUGACAGAAACUCUAGAUG		siRNA21	ShortStack
ghr-b1.1r1-2197	Gossypium hirsutum (Upland Cotton) 1.1	A01:46820531-46821056	.	510	0.55	CUUAUCUCUUGACUGUAGCCU		siRNA21	ShortStack
ghr-b1.1r1-2412	Gossypium hirsutum (Upland Cotton) 1.1	A01:74905326-74905382	-	17,247	18.63	UUCAUUGUCUGUUCGACCUGA	miR858	siRNA21	ShortStack
ghr-b1.1r1-2416	Gossypium hirsutum (Upland Cotton) 1.1	A01:74968501-74968567	-	353	0.38	AUUGAUUUGACAAAGGCUUUGCA		siRNA21	ShortStack
ghr-b1.1r1-2417	Gossypium hirsutum (Upland Cotton) 1.1	A01:74969728-74969755	-	7,922	8.56	UUCGUUGUCUGUUCGACCUUG	miR858	siRNA21	ShortStack
ghr-b1.1r1-2485	Gossypium hirsutum (Upland Cotton) 1.1	A01:78816230-78816697	+	25,395	27.43	ACGAGUUGGAUUCUGCCAUUU		siRNA21	ShortStack
ghr-b1.1r1-2742	Gossypium hirsutum (Upland Cotton) 1.1	A01:89882263-89882284	+	242	0.26	UCGGUGACAGAUAAGGGUUAG		siRNA21	ShortStack
ghr-b1.1r1-2755	Gossypium hirsutum (Upland Cotton) 1.1	A01:90274287-90274348	.	485	0.52	UCAGGAGAGACUGCAUUUCUU		siRNA21	ShortStack
ghr-MIR394b-m1	Gossypium hirsutum (Upland Cotton) 1.1	A01:90441954-90442118	-	227	0.25	GGAGGCGGCCAGUAUGUCAAA	miR394	siRNA21	miRBase21-BestBlastHit
ghr-b1.1r1-3193	Gossypium hirsutum (Upland Cotton) 1.1	A01:95440904-95441245	.	1,972	2.13	UUAUAUAUUAGAUCAAAGAGC	miR7484	siRNA21	ShortStack
ghr-b1.1r1-3220	Gossypium hirsutum (Upland Cotton) 1.1	A01:95627034-95627218	+	267	0.29	CUCGAAUUGUGCUAAUCCUCU		siRNA21	ShortStack
ghr-b1.1r1-3701	Gossypium hirsutum (Upland Cotton) 1.1	A01:98555498-98555519	+	837	0.90	AGAAUCCUGAUGAUGCUGCAC	miR172	siRNA21	ShortStack
ghr-b1.1r1-3797	Gossypium hirsutum (Upland Cotton) 1.1	A01:98921723-98921827	+	2,540	2.74	GUCUGGGUGGUGUAGUUGGUU		siRNA21	ShortStack
ghr-b1.1r1-4038	Gossypium hirsutum (Upland Cotton) 1.1	A02:97474-97622	-	12,450	13.45	CCGACCUUAGCUCAGUUGGUA	miR6478	siRNA21	ShortStack
ghr-b1.1r1-4155	Gossypium hirsutum (Upland Cotton) 1.1	A02:543998-544428	-	10,965	11.84	GGGGUCAUAGUAGGCAGGUUA		siRNA21	ShortStack
ghr-b1.1r1-4169	Gossypium hirsutum (Upland Cotton) 1.1	A02:682605-682925	.	317	0.34	CUGGAUUGCUGAAGAAAGCCU		siRNA21	ShortStack
ghr-b1.1r1-4205	Gossypium hirsutum (Upland Cotton) 1.1	A02:922388-923087	.	16,644	17.98	AUUUCCGUUCUUGGUAGCUCG		siRNA21	ShortStack
ghr-b1.1r1-4206	Gossypium hirsutum (Upland Cotton) 1.1	A02:923163-923561	.	3,634	3.93	UGAGAACUUUAUUGAUGACGG		siRNA21	ShortStack
ghr-b1.1r1-4219	Gossypium hirsutum (Upland Cotton) 1.1	A02:969079-969466	.	717	0.77	UGUGGAAGAAUGGUCUUGGAA		siRNA21	ShortStack
ghr-b1.1r1-4342	Gossypium hirsutum (Upland Cotton) 1.1	A02:1745725-1746444	.	3,700	4.00	UGAUCCUGGAUUUGCUGAAAG		siRNA21	ShortStack
ghr-b1.1r1-4393	Gossypium hirsutum (Upland Cotton) 1.1	A02:2087308-2088701	.	2,678	2.89	CGUGGAGUAGAAGAGUGACGG		siRNA21	ShortStack
ghr-b1.1r1-4401	Gossypium hirsutum (Upland Cotton) 1.1	A02:2145751-2146138	-	2,114	2.28	UAUGGUAUUGUUUGACACUUCA		siRNA21	ShortStack
ghr-b1.1r1-4851	Gossypium hirsutum (Upland Cotton) 1.1	A02:4490399-4490490	.	535	0.58	CUGUUCAUAACUGUAUAAGGCCA		siRNA21	ShortStack
ghr-b1.1r1-4924	Gossypium hirsutum (Upland Cotton) 1.1	A02:5243403-5243904	-	12,647	13.66	UUCGGAAGCAUAUGAAAAGGC		siRNA21	ShortStack
ghr-b1.1r1-4988	Gossypium hirsutum (Upland Cotton) 1.1	A02:6026589-6026946	-	441,081	476.45	UUCCACUCUUGCUUAACCCUG		siRNA21	ShortStack
ghr-b1.1r1-4989	Gossypium hirsutum (Upland Cotton) 1.1	A02:6027184-6027460	-	3,637	3.93	GGGCCAAGCAAAAGUGGAACC		siRNA21	ShortStack
ghr-b1.1r1-5157	Gossypium hirsutum (Upland Cotton) 1.1	A02:7361634-7361721	.	245	0.27	UAAUAUCGUGUGAUCCAAUGG		siRNA21	ShortStack
ghr-b1.1r1-5307	Gossypium hirsutum (Upland Cotton) 1.1	A02:9236455-9236536	.	912	0.99	UUUUAAUGAACCCGGCCCGGC		siRNA21	ShortStack
ghr-b1.1r1-5318	Gossypium hirsutum (Upland Cotton) 1.1	A02:9293006-9293818	.	1,289	1.39	CUCGGUUGUACAGCGGAGCGG		siRNA21	ShortStack
ghr-b1.1r1-5406	Gossypium hirsutum (Upland Cotton) 1.1	A02:10149133-10149217	.	1,025	1.11	UUUGUUAUAGCUAUGGAGGUU		siRNA21	ShortStack
ghr-b1.1r1-5777	Gossypium hirsutum (Upland Cotton) 1.1	A02:19130729-19130793	+	17,362	18.75	AACAGACCGGUAGACUUGAAC		siRNA21	ShortStack
ghr-b1.1r1-5778	Gossypium hirsutum (Upland Cotton) 1.1	A02:19187220-19187322	-	1,533	1.66	AGGCACUUGAACUUUAGAGGC		siRNA21	ShortStack
ghr-b1.1r1-5792	Gossypium hirsutum (Upland Cotton) 1.1	A02:19714445-19714500	-	527	0.57	CGUAACCUGGCUCUGAUACCA	miR8155	siRNA21	ShortStack
ghr-b1.1r1-5814	Gossypium hirsutum (Upland Cotton) 1.1	A02:20663955-20664196	.	345	0.37	ACAAGACACACUCUCUGACAG		siRNA21	ShortStack
ghr-b1.1r1-6005	Gossypium hirsutum (Upland Cotton) 1.1	A02:41268902-41268926	+	4,624	5.00	UCGGACCAGGCUUCAUUCCCC	miR166	siRNA21	ShortStack
ghr-b1.1r1-6353	Gossypium hirsutum (Upland Cotton) 1.1	A02:72486734-72486840	+	819	0.89	AAUUGGCCGGGUCGUUCCUCU		siRNA21	ShortStack
ghr-b1.1r1-6470	Gossypium hirsutum (Upland Cotton) 1.1	A02:75112187-75112250	.	355	0.38	AAAGAUGGAUCAACCAGAGUU		siRNA21	ShortStack
ghr-b1.1r1-6713	Gossypium hirsutum (Upland Cotton) 1.1	A02:79615087-79615278	-	1,820	1.97	UUGACGGCGGAGAAACAGUUG		siRNA21	ShortStack
ghr-b1.1r1-6714	Gossypium hirsutum (Upland Cotton) 1.1	A02:79615793-79615951	.	1,149	1.24	CCACUAUCGGCAUCUUCUUCU		siRNA21	ShortStack
ghr-b1.1r1-7369	Gossypium hirsutum (Upland Cotton) 1.1	A03:29113-29247	.	514	0.56	CAGAACGAGAAUACAUGUUGC		siRNA21	ShortStack
ghr-b1.1r1-7435	Gossypium hirsutum (Upland Cotton) 1.1	A03:413692-413789	+	4,988	5.39	GUCAUGCUAAAUUUUGAAUGAAAG		siRNA21	ShortStack
ghr-b1.1r1-7440	Gossypium hirsutum (Upland Cotton) 1.1	A03:444181-444592	+	2,187	2.36	CUUGCAGGUCGUAUCUCUGUC		siRNA21	ShortStack
ghr-b1.1r1-7627	Gossypium hirsutum (Upland Cotton) 1.1	A03:1696381-1696436	+	308	0.33	CUUUGAGACAAGUGGAGGUAG		siRNA21	ShortStack
ghr-b1.1r1-7797	Gossypium hirsutum (Upland Cotton) 1.1	A03:2365266-2365542	.	858	0.93	CUAACAACUUGGAGCGGGCAA		siRNA21	ShortStack
ghr-b1.1r1-7917	Gossypium hirsutum (Upland Cotton) 1.1	A03:2927343-2927441	+	865	0.93	UGAAGAGGUCGACUGAAGAGGCGA		siRNA21	ShortStack
ghr-b1.1r1-7918	Gossypium hirsutum (Upland Cotton) 1.1	A03:2927544-2927619	+	2,845	3.07	CAGACUACCUCUUCAAGCACU		siRNA21	ShortStack
ghr-b1.1r1-7992	Gossypium hirsutum (Upland Cotton) 1.1	A03:3479546-3480633	.	1,208	1.31	CCGACUGGUGCAUAACAUGGC		siRNA21	ShortStack
ghr-b1.1r1-8260	Gossypium hirsutum (Upland Cotton) 1.1	A03:6028830-6029123	+	12,685	13.70	UGUCAGGAUGUAUUGUUGGUU		siRNA21	ShortStack
ghr-b1.1r1-8261	Gossypium hirsutum (Upland Cotton) 1.1	A03:6029354-6029552	+	597	0.65	UAGAGAAGUUUGCACCCUUAG		siRNA21	ShortStack
ghr-b1.1r1-8334	Gossypium hirsutum (Upland Cotton) 1.1	A03:6573551-6573760	.	251	0.27	CGGCACUGAGCACGGCAUUGU		siRNA21	ShortStack
ghr-b1.1r1-8360	Gossypium hirsutum (Upland Cotton) 1.1	A03:6768732-6768773	-	1,107	1.20	UUCUGGCAAAGAAAGGAUU		siRNA21	ShortStack
ghr-b1.1r1-8398	Gossypium hirsutum (Upland Cotton) 1.1	A03:7298948-7299039	+	415	0.45	GUGGGCGUGCCGGAGUGGUUA		siRNA21	ShortStack
ghr-b1.1r1-8602	Gossypium hirsutum (Upland Cotton) 1.1	A03:10619486-10619519	.	530	0.57	UUCAUUGUAGCAGUCUAGAGGCAC		siRNA21	ShortStack
ghr-b1.1r1-8780	Gossypium hirsutum (Upland Cotton) 1.1	A03:14975335-14975431	+	1,273	1.38	UGAAGCUGCCAGCCUGAUCUC	miR167	siRNA21	ShortStack
ghr-b1.1r1-8958	Gossypium hirsutum (Upland Cotton) 1.1	A03:21991128-21991371	-	1,658	1.79	CGAAACCUGGCUCUGAUACCA	miR5139	siRNA21	ShortStack
ghr-b1.1r1-8959	Gossypium hirsutum (Upland Cotton) 1.1	A03:21993882-21993902	-	98	0.11	GGCAGUCACCUUGGCUAACU	miR169	siRNA21	ShortStack
ghr-b1.1r1-9062	Gossypium hirsutum (Upland Cotton) 1.1	A03:31100403-31100990	.	624	0.67	CUUUGGAUCCAUGGAAAUCAU		siRNA21	ShortStack
ghr-b1.1r1-9216	Gossypium hirsutum (Upland Cotton) 1.1	A03:46269839-46269983	.	557	0.60	AUUUAGAUUGUACUCAUUCU		siRNA21	ShortStack
ghr-b1.1r1-9256	Gossypium hirsutum (Upland Cotton) 1.1	A03:50137101-50137198	.	78	0.08	AUCGAUACAUAUGACACUUUUG		siRNA21	ShortStack
ghr-b1.1r1-9330	Gossypium hirsutum (Upland Cotton) 1.1	A03:57727168-57727419	+	532	0.58	UGAGACACACGGCUGGCACAC		siRNA21	ShortStack
ghr-b1.1r1-9413	Gossypium hirsutum (Upland Cotton) 1.1	A03:61851825-61851846	-	613	0.66	AAAGGGAAAAUAAGAAAACGG		siRNA21	ShortStack
ghr-b1.1r1-9440	Gossypium hirsutum (Upland Cotton) 1.1	A03:62652652-62652836	+	1,750	1.89	UUUGUAUGUGGCGGGAGAUAU	miR8783	siRNA21	ShortStack
ghr-b1.1r1-9792	Gossypium hirsutum (Upland Cotton) 1.1	A03:83620328-83620438	.	189	0.20	UAUUUUCAUCGAUCAGUCGGC		siRNA21	ShortStack
ghr-b1.1r1-9802	Gossypium hirsutum (Upland Cotton) 1.1	A03:83663467-83663543	.	370	0.40	CCCGAAAUAGGCCAUGGACUU		siRNA21	ShortStack
ghr-b1.1r1-9949	Gossypium hirsutum (Upland Cotton) 1.1	A03:87066928-87066956	-	536	0.58	ACAGCUUUAGAAAUCAUUCCU	miR7505	siRNA21	ShortStack
ghr-b1.1r1-10028	Gossypium hirsutum (Upland Cotton) 1.1	A03:89104835-89105755	.	1,636	1.77	AUGGCAGUAUUCGGAUCAUUA		siRNA21	ShortStack
ghr-b1.1r1-10029	Gossypium hirsutum (Upland Cotton) 1.1	A03:89105857-89106128	.	439	0.47	UCGAGAAUGGGAAUCAGGCGG		siRNA21	ShortStack
ghr-b1.1r1-10030	Gossypium hirsutum (Upland Cotton) 1.1	A03:89106302-89107274	.	749	0.81	CUGAGGACAUAGGCAGCAUGA		siRNA21	ShortStack
ghr-b1.1r1-10236	Gossypium hirsutum (Upland Cotton) 1.1	A03:92730241-92730467	+	32,652	35.27	CGAUCCCCGGCAACGGCGCCA	miR8175	siRNA21	ShortStack
ghr-b1.1r1-10528	Gossypium hirsutum (Upland Cotton) 1.1	A03:95931621-95931708	+	2,688	2.90	GUCUGGGUGGUGUAGUUGGUU		siRNA21	ShortStack
ghr-b1.1r1-11234	Gossypium hirsutum (Upland Cotton) 1.1	A03:99749750-99750095	+	4,542,470	4,906.73	UCGGACCAGGCUUCAUUCCCG	miR166	siRNA21	ShortStack
ghr-b1.1r1-11295	Gossypium hirsutum (Upland Cotton) 1.1	A04:2742-2904	.	2,198	2.37	AGACUGCAUGAAAUGGAAUUC		siRNA21	ShortStack
ghr-b1.1r1-11538	Gossypium hirsutum (Upland Cotton) 1.1	A04:1271988-1272162	+	562	0.61	UUCUCGGCAUGAAGAUAAGUA		siRNA21	ShortStack
ghr-b1.1r1-11615	Gossypium hirsutum (Upland Cotton) 1.1	A04:1574414-1574443	-	750	0.81	UUUGGGCCUAGAACGGGGAGA		siRNA21	ShortStack
ghr-b1.1r1-11996	Gossypium hirsutum (Upland Cotton) 1.1	A04:4747143-4748524	.	1,692	1.83	UUAGAUGAUGUGUGGGACAAA		siRNA21	ShortStack
ghr-b1.1r1-12120	Gossypium hirsutum (Upland Cotton) 1.1	A04:6638121-6638469	.	896	0.97	UGGAGGAGGGUUGUUUUUUGU		siRNA21	ShortStack
ghr-b1.1r1-12121	Gossypium hirsutum (Upland Cotton) 1.1	A04:6638739-6638938	+	553	0.60	UUGUAACUGGGUAAUGGGCUA		siRNA21	ShortStack
ghr-b1.1r1-12140	Gossypium hirsutum (Upland Cotton) 1.1	A04:6862261-6862392	-	859	0.93	UUUAGAAAUCGUUCCUUCCUU		siRNA21	ShortStack
ghr-b1.1r1-12143	Gossypium hirsutum (Upland Cotton) 1.1	A04:6866691-6866736	-	913	0.99	UUUAGAAAUCGUUCCUUCCUU		siRNA21	ShortStack
ghr-b1.1r1-12161	Gossypium hirsutum (Upland Cotton) 1.1	A04:6959806-6960081	.	723	0.78	UUUAGAAAUCGUUCCUUCCUU		siRNA21	ShortStack
ghr-b1.1r1-12162	Gossypium hirsutum (Upland Cotton) 1.1	A04:6968406-6968442	-	600	0.65	ACAGCUUUAGAAAUCAUUCCU	miR7505	siRNA21	ShortStack
ghr-b1.1r1-12194	Gossypium hirsutum (Upland Cotton) 1.1	A04:7179369-7179637	.	387	0.42	UCAGGAAUCAGUUUGACAUGG		siRNA21	ShortStack
ghr-b1.1r1-12195	Gossypium hirsutum (Upland Cotton) 1.1	A04:7179775-7179948	.	510	0.55	UUGGGUAGAAGGAGGUUGCAA		siRNA21	ShortStack
ghr-b1.1r1-12196	Gossypium hirsutum (Upland Cotton) 1.1	A04:7180132-7180354	.	1,477	1.60	UCAGUCGAGAAUGUGUAGAAA		siRNA21	ShortStack
ghr-b1.1r1-12197	Gossypium hirsutum (Upland Cotton) 1.1	A04:7180595-7180751	.	1,093	1.18	CUUGAGACUGUAUGAAACUAC		siRNA21	ShortStack
ghr-b1.1r1-12198	Gossypium hirsutum (Upland Cotton) 1.1	A04:7180827-7181025	-	563	0.61	UGAAAUUGUAGAAGAAUUCCG		siRNA21	ShortStack
ghr-b1.1r1-12199	Gossypium hirsutum (Upland Cotton) 1.1	A04:7181574-7181701	.	556	0.60	AUGAAAAGCACUCUGCAGCCU		siRNA21	ShortStack
ghr-b1.1r1-12200	Gossypium hirsutum (Upland Cotton) 1.1	A04:7181781-7181908	.	849	0.92	UGAAUGUUCGUUGGAUAAUUU		siRNA21	ShortStack
ghr-b1.1r1-12201	Gossypium hirsutum (Upland Cotton) 1.1	A04:7182252-7182392	.	2,996	3.24	AACAAACUGAGCAAGCACUGA		siRNA21	ShortStack
ghr-b1.1r1-12202	Gossypium hirsutum (Upland Cotton) 1.1	A04:7182735-7182767	+	1,063	1.15	UCUAACGGGCGAUGAUAGAAU		siRNA21	ShortStack
ghr-b1.1r1-12214	Gossypium hirsutum (Upland Cotton) 1.1	A04:7231300-7231332	+	1,178	1.27	UCUAACGGGCGAUGAUAGAAU		siRNA21	ShortStack
ghr-b1.1r1-12231	Gossypium hirsutum (Upland Cotton) 1.1	A04:7436843-7436944	.	174	0.19	AGGAGAAGAUAGGAAUUCCAA		siRNA21	ShortStack
ghr-b1.1r1-12233	Gossypium hirsutum (Upland Cotton) 1.1	A04:7487031-7487054	+	89	0.10	UCCGAGCAAGAAUUAUGGUUA		siRNA21	ShortStack
ghr-b1.1r1-12234	Gossypium hirsutum (Upland Cotton) 1.1	A04:7487117-7487244	.	238	0.26	AGGAGAAGAUAGGAAUUCCAA		siRNA21	ShortStack
ghr-b1.1r1-12235	Gossypium hirsutum (Upland Cotton) 1.1	A04:7487406-7487877	.	651	0.70	UGUAUAAAGGCAUGGACUCAA		siRNA21	ShortStack
ghr-b1.1r1-12290	Gossypium hirsutum (Upland Cotton) 1.1	A04:8430650-8430761	+	1,794	1.94	CAUCCGAUUGUAAACAACAUC		siRNA21	ShortStack
ghr-b1.1r1-12294	Gossypium hirsutum (Upland Cotton) 1.1	A04:8466629-8466970	+	6,924	7.48	CAUCCGAUUGUAAACAACAUC		siRNA21	ShortStack
ghr-b1.1r1-12295	Gossypium hirsutum (Upland Cotton) 1.1	A04:8467147-8467645	.	1,968	2.13	CAUCCGAUUGUAAACAACAUU		siRNA21	ShortStack
ghr-b1.1r1-12297	Gossypium hirsutum (Upland Cotton) 1.1	A04:8475551-8475690	+	1,125	1.22	CAUCCGAUUGUAAACAACAUC		siRNA21	ShortStack
ghr-b1.1r1-12298	Gossypium hirsutum (Upland Cotton) 1.1	A04:8475770-8475953	.	860	0.93	CAUAAACACCUUGGACUGCUC		siRNA21	ShortStack
ghr-b1.1r1-12581	Gossypium hirsutum (Upland Cotton) 1.1	A04:26312654-26312687	-	413	0.45	UUAGGCCCUGAACUUGGCAGU		siRNA21	ShortStack
ghr-b1.1r1-12903	Gossypium hirsutum (Upland Cotton) 1.1	A04:50027215-50027352	-	6,792	7.34	GUCUGGGUGGUGUAGUUGGUU		siRNA21	ShortStack
ghr-b1.1r1-12965	Gossypium hirsutum (Upland Cotton) 1.1	A04:51433672-51434129	.	1,277	1.38	CUGGAUAUAGCAGUGAAUCUU		siRNA21	ShortStack
ghr-b1.1r1-12966	Gossypium hirsutum (Upland Cotton) 1.1	A04:51434384-51435208	.	1,518	1.64	UGUAUGACUGCAGAAGAAUCA		siRNA21	ShortStack
ghr-b1.1r1-13178	Gossypium hirsutum (Upland Cotton) 1.1	A04:55786250-55786704	.	710	0.77	AAGCGGAUGGCUACUGGAAUUUAC		siRNA21	ShortStack
ghr-b1.1r1-13182	Gossypium hirsutum (Upland Cotton) 1.1	A04:55793685-55794250	.	845	0.91	CCAGAGACGGUAGACAAUAGC		siRNA21	ShortStack
ghr-b1.1r1-13467	Gossypium hirsutum (Upland Cotton) 1.1	A04:59300673-59300849	.	1,387	1.50	UCCGUGGCCUUGCAACUGCAAU		siRNA21	ShortStack
ghr-b1.1r1-14008	Gossypium hirsutum (Upland Cotton) 1.1	A04:62270161-62270604	.	914	0.99	UGGGUCGGUCUGAAAACGCGG		siRNA21	ShortStack
ghr-b1.1r1-14058	Gossypium hirsutum (Upland Cotton) 1.1	A04:62532381-62532484	-	318	0.34	UGGACUUAGCUGCCAAGUUUG		siRNA21	ShortStack
ghr-b1.1r1-14059	Gossypium hirsutum (Upland Cotton) 1.1	A04:62532556-62532648	-	2,212	2.39	ACUUCUAGUCCCUGAACUUGA		siRNA21	ShortStack
ghr-b1.1r1-14060	Gossypium hirsutum (Upland Cotton) 1.1	A04:62535874-62536131	+	1,782	1.93	UUGGUACCUAAACUUGGCAAC		siRNA21	ShortStack
ghr-b1.1r1-14071	Gossypium hirsutum (Upland Cotton) 1.1	A04:62569960-62570308	.	549	0.59	CAAACACGGAUUUUUGGCAAUG		siRNA21	ShortStack
ghr-b1.1r1-14072	Gossypium hirsutum (Upland Cotton) 1.1	A04:62571041-62571762	.	1,281	1.38	CUCGAUGAAGGGUUAGUAGCGGU		siRNA21	ShortStack
ghr-b1.1r1-14105	Gossypium hirsutum (Upland Cotton) 1.1	A04:62795093-62795142	-	3,066	3.31	CGGCAAGUUGUCCUCGGCUAC	miR169	siRNA21	ShortStack
ghr-b1.1r1-14106	Gossypium hirsutum (Upland Cotton) 1.1	A04:62795236-62795284	-	2,262	2.44	CAGCCAAGGAUGACUUGCCGG	miR169	siRNA21	ShortStack
ghr-b1.1r1-14355	Gossypium hirsutum (Upland Cotton) 1.1	A05:2574670-2575175	.	621	0.67	CGAUCCAUGGAUGUGUGUAGC		siRNA21	ShortStack
ghr-b1.1r1-14356	Gossypium hirsutum (Upland Cotton) 1.1	A05:2575511-2575758	.	215	0.23	UCAAGACUAGAAGAAGUACCG		siRNA21	ShortStack
ghr-b1.1r1-14385	Gossypium hirsutum (Upland Cotton) 1.1	A05:2940134-2940204	-	2,003	2.16	UCAUUGGUGUGGAAUGUGCCA		siRNA21	ShortStack
ghr-b1.1r1-14821	Gossypium hirsutum (Upland Cotton) 1.1	A05:7077328-7077560	.	211	0.23	UUAUGACGGAACCAGUGGGGG		siRNA21	ShortStack
ghr-b1.1r1-14865	Gossypium hirsutum (Upland Cotton) 1.1	A05:7463579-7463637	+	98	0.11	AGUGGAAUGUAAAUAAAAUAGG		siRNA21	ShortStack
ghr-b1.1r1-14920	Gossypium hirsutum (Upland Cotton) 1.1	A05:7916402-7916429	+	336	0.36	AAAGAGAAGAUUUUGGGAUGA		siRNA21	ShortStack
ghr-b1.1r1-15062	Gossypium hirsutum (Upland Cotton) 1.1	A05:9143786-9144871	.	60,066	64.88	GAUAGUUCGGAACAUAGGCCG		siRNA21	ShortStack
ghr-b1.1r1-15063	Gossypium hirsutum (Upland Cotton) 1.1	A05:9145230-9145449	.	367	0.40	CUAUUAUCAGAAGGCUGGUUU		siRNA21	ShortStack
ghr-b1.1r1-15338	Gossypium hirsutum (Upland Cotton) 1.1	A05:11795135-11795758	.	28,310	30.58	CCAAUCUCUGUUGAGCAAAUU		siRNA21	ShortStack
ghr-b1.1r1-15392	Gossypium hirsutum (Upland Cotton) 1.1	A05:12257397-12257500	+	3,108	3.36	UCAGGUCAUCUUGCAGCUUCA	miR167	siRNA21	ShortStack
ghr-b1.1r1-15398	Gossypium hirsutum (Upland Cotton) 1.1	A05:12335316-12336439	.	1,390	1.50	UCUGGAGACUGCAAGAAUCCC		siRNA21	ShortStack
ghr-b1.1r1-15399	Gossypium hirsutum (Upland Cotton) 1.1	A05:12336649-12337010	.	25,614	27.67	AGAAGAACGUCAUUCUCCCGA		siRNA21	ShortStack
ghr-b1.1r1-15400	Gossypium hirsutum (Upland Cotton) 1.1	A05:12337109-12337571	.	86,650	93.60	UCUGUGGGGUCAUUGGACUAC		siRNA21	ShortStack
ghr-b1.1r1-15420	Gossypium hirsutum (Upland Cotton) 1.1	A05:12556641-12556860	+	5,310	5.74	AAUAUAUACGCCGUCCUGUGU		siRNA21	ShortStack
ghr-b1.1r1-15529	Gossypium hirsutum (Upland Cotton) 1.1	A05:13632518-13632656	+	6,469	6.99	UCUGAAUAGAACGACGAUGAU		siRNA21	ShortStack
ghr-b1.1r1-15599	Gossypium hirsutum (Upland Cotton) 1.1	A05:14371245-14371370	+	875	0.95	CGGUCCCCGGCAACGGCGCCA	miR8175	siRNA21	ShortStack
ghr-b1.1r1-15786	Gossypium hirsutum (Upland Cotton) 1.1	A05:15999367-15999472	+	3,237	3.50	UGUUGGCUCGGUUCACUCAGA	miR171	siRNA21	ShortStack
ghr-b1.1r1-15887	Gossypium hirsutum (Upland Cotton) 1.1	A05:16908211-16908375	-	191	0.21	UGCAAGGAAAGAAGCGAACAU		siRNA21	ShortStack
ghr-b1.1r1-16056	Gossypium hirsutum (Upland Cotton) 1.1	A05:18743799-18743966	.	128	0.14	UUUGGACCUCUCAAAGACUGA		siRNA21	ShortStack
ghr-b1.1r1-16081	Gossypium hirsutum (Upland Cotton) 1.1	A05:18938477-18938919	.	198	0.21	AAAGAAUUCAAGUUUGACUGCAUG		siRNA21	ShortStack
ghr-b1.1r1-16315	Gossypium hirsutum (Upland Cotton) 1.1	A05:20797564-20797975	.	629	0.68	CUCCCCGCUUCUCUGAAUCCC		siRNA21	ShortStack
ghr-b1.1r1-16325	Gossypium hirsutum (Upland Cotton) 1.1	A05:20840435-20840509	+	644	0.70	UUAAGACCUGAAUCUGGACC		siRNA21	ShortStack
ghr-b1.1r1-16326	Gossypium hirsutum (Upland Cotton) 1.1	A05:20840824-20840894	+	595	0.64	UUGGUUCUACUUCUUUGGUCC		siRNA21	ShortStack
ghr-b1.1r1-16343	Gossypium hirsutum (Upland Cotton) 1.1	A05:20969487-20969718	.	1,953	2.11	UCUCUCAAUUCGGUUCUCUAG		siRNA21	ShortStack
ghr-b1.1r1-16344	Gossypium hirsutum (Upland Cotton) 1.1	A05:20969833-20970126	-	4,648	5.02	AUGAAGAUUAAUGAUCGUUUG		siRNA21	ShortStack
ghr-b1.1r1-16563	Gossypium hirsutum (Upland Cotton) 1.1	A05:22772560-22773422	.	1,124	1.21	CGGUGGAUUACUUUGCGGCUG		siRNA21	ShortStack
ghr-b1.1r1-16588	Gossypium hirsutum (Upland Cotton) 1.1	A05:23532998-23533085	.	331	0.36	UAUUAAUGCUGCAUUUUACAC		siRNA21	ShortStack
ghr-b1.1r1-16606	Gossypium hirsutum (Upland Cotton) 1.1	A05:23702224-23702461	-	1,831	1.98	ACUCCACAAGAGGGCUUAAGAAAC		siRNA21	ShortStack
ghr-b1.1r1-16770	Gossypium hirsutum (Upland Cotton) 1.1	A05:25238793-25239006	.	2,081	2.25	UUCUGUUGUGGUGUAUCCCUAAC		siRNA21	ShortStack
ghr-b1.1r1-16939	Gossypium hirsutum (Upland Cotton) 1.1	A05:26737671-26737792	-	915	0.99	UGCUACUUGUAGUUAUGCAUG	miR7512	siRNA21	ShortStack
ghr-b1.1r1-17075	Gossypium hirsutum (Upland Cotton) 1.1	A05:27928824-27928858	-	800	0.86	UUAGAUUCACUGGCUGGGUU		siRNA21	ShortStack
ghr-b1.1r1-17077	Gossypium hirsutum (Upland Cotton) 1.1	A05:27969063-27969092	-	1,502	1.62	UUAGAUUCAUUGGCUGAGUUA		siRNA21	ShortStack
ghr-b1.1r1-17122	Gossypium hirsutum (Upland Cotton) 1.1	A05:28647890-28649351	.	2,177	2.35	UUCAACAAGCGGAACCUGCCA		siRNA21	ShortStack
ghr-b1.1r1-17157	Gossypium hirsutum (Upland Cotton) 1.1	A05:28928890-28928918	-	1,061	1.15	UCUUGAACUCAGCAACAAGGA		siRNA21	ShortStack
ghr-b1.1r1-17166	Gossypium hirsutum (Upland Cotton) 1.1	A05:28991662-28991739	+	265	0.29	UUGGAAGGUGAUCAAUCGGUU		siRNA21	ShortStack
ghr-b1.1r1-17171	Gossypium hirsutum (Upland Cotton) 1.1	A05:29013200-29013235	.	427	0.46	AUAUUUUAUUUAGUGUUGGGC		siRNA21	ShortStack
ghr-b1.1r1-17194	Gossypium hirsutum (Upland Cotton) 1.1	A05:29289787-29290029	-	7,476	8.08	UUGGACUGAAGGGAGCUCCUU	miR319	siRNA21	ShortStack
ghr-b1.1r1-17225	Gossypium hirsutum (Upland Cotton) 1.1	A05:29754414-29754434	-	335	0.36	CGGUGACUUCAACAAUGGCCU		siRNA21	ShortStack
ghr-b1.1r1-17324	Gossypium hirsutum (Upland Cotton) 1.1	A05:30957506-30957723	.	1,843	1.99	AAAAAACAAGACGUGGAAGCUGGC		siRNA21	ShortStack
ghr-b1.1r1-17491	Gossypium hirsutum (Upland Cotton) 1.1	A05:33669954-33670208	.	935	1.01	UUGGCACACAUCAAAGAACGG		siRNA21	ShortStack
ghr-b1.1r1-17581	Gossypium hirsutum (Upland Cotton) 1.1	A05:35115993-35119236	.	13,654	14.75	UCUGAGGAAUUUGAUGCUUUC		siRNA21	ShortStack
ghr-b1.1r1-17607	Gossypium hirsutum (Upland Cotton) 1.1	A05:35505998-35506452	.	646	0.70	UAUCAGAUGAUGAUUGUUGGA		siRNA21	ShortStack
ghr-b1.1r1-17617	Gossypium hirsutum (Upland Cotton) 1.1	A05:35589119-35589255	+	1,089	1.18	UCCAAUCUGCAGAAGAACUCC		siRNA21	ShortStack
ghr-b1.1r1-17623	Gossypium hirsutum (Upland Cotton) 1.1	A05:35662097-35664013	.	2,587	2.79	UCGUUGUAGAUCAAUUGGGCA		siRNA21	ShortStack
ghr-b1.1r1-18057	Gossypium hirsutum (Upland Cotton) 1.1	A05:58424479-58425817	.	2,009	2.17	CUGGUCUGAGAGACUUUGUCCU		siRNA21	ShortStack
ghr-b1.1r1-18124	Gossypium hirsutum (Upland Cotton) 1.1	A05:62098949-62099107	.	1,772	1.91	AGAGGAACCGUUGAUUCGCAU		siRNA21	ShortStack
ghr-b1.1r1-18134	Gossypium hirsutum (Upland Cotton) 1.1	A05:62121859-62121939	+	1,578	1.71	CUGCUCGUCCCUACUGCCGGU		siRNA21	ShortStack
ghr-b1.1r1-18165	Gossypium hirsutum (Upland Cotton) 1.1	A05:62174061-62174088	.	247	0.27	GAGUUCGGAGACGUCGGCGGG		siRNA21	ShortStack
ghr-b1.1r1-18195	Gossypium hirsutum (Upland Cotton) 1.1	A05:62235566-62235754	+	2,846	3.07	CGAUCCGGGCGGAAGACAUUA		siRNA21	ShortStack
ghr-b1.1r1-18197	Gossypium hirsutum (Upland Cotton) 1.1	A05:62237038-62237073	+	890	0.96	CGUGAGCUGGGAUUAGACCGC		siRNA21	ShortStack
ghr-b1.1r1-18204	Gossypium hirsutum (Upland Cotton) 1.1	A05:62247368-62247621	+	32,775	35.40	CUUUGUCGCUUCGAUUCGUUU		siRNA21	ShortStack
ghr-b1.1r1-18287	Gossypium hirsutum (Upland Cotton) 1.1	A05:62352697-62352801	+	3,470	3.75	UCCCUACUGCCGGCGAUGCGU		siRNA21	ShortStack
ghr-b1.1r1-18409	Gossypium hirsutum (Upland Cotton) 1.1	A05:69336251-69336273	-	293	0.32	UGAGGCAGUGGUACAAGCGAUU		siRNA21	ShortStack
ghr-b1.1r1-18502	Gossypium hirsutum (Upland Cotton) 1.1	A05:73061923-73062034	.	632	0.68	UUGGUUAUGGUCUAGACGGUG		siRNA21	ShortStack
ghr-b1.1r1-19293	Gossypium hirsutum (Upland Cotton) 1.1	A05:86885974-86886316	.	470	0.51	CUACGACUGAAUUUGCUGUGU		siRNA21	ShortStack
ghr-b1.1r1-19294	Gossypium hirsutum (Upland Cotton) 1.1	A05:86886397-86887180	.	849	0.92	CUGGAUCAAGGACUUAACCCU		siRNA21	ShortStack
ghr-b1.1r1-19295	Gossypium hirsutum (Upland Cotton) 1.1	A05:86887214-86887275	.	63	0.07	AAAGAUUGUCAGUUUGGGUAA		siRNA21	ShortStack
ghr-b1.1r1-19693	Gossypium hirsutum (Upland Cotton) 1.1	A05:89378164-89378436	.	1,170	1.26	UCAAAGUUAGAUCUGAGGGCA		siRNA21	ShortStack
ghr-b1.1r1-19868	Gossypium hirsutum (Upland Cotton) 1.1	A05:90801710-90801898	.	484	0.52	AAAGAGAUUAGUGGAGAAUGGCAA		siRNA21	ShortStack
ghr-b1.1r1-19959	Gossypium hirsutum (Upland Cotton) 1.1	A05:91409636-91410208	.	3,636	3.93	CAAGAGGUACUGCAUCACCAA		siRNA21	ShortStack
ghr-b1.1r1-20009	Gossypium hirsutum (Upland Cotton) 1.1	A05:91621608-91621698	-	6,215	6.71	GCGUAUGAGGAGCCAAGCAUA	miR160	siRNA21	ShortStack
ghr-b1.1r1-20190	Gossypium hirsutum (Upland Cotton) 1.1	A06:705090-705227	.	118	0.13	UUUUAUAACGAAAGAGGGCUAC		siRNA21	ShortStack
ghr-b1.1r1-20239	Gossypium hirsutum (Upland Cotton) 1.1	A06:967403-969955	.	10,605	11.46	UCAUGACAAAGGACGAGCUUA		siRNA21	ShortStack
ghr-b1.1r1-20278	Gossypium hirsutum (Upland Cotton) 1.1	A06:1260452-1260832	.	1,211	1.31	UCUCGUUCUGUAUUCGUCGAA		siRNA21	ShortStack
ghr-b1.1r1-20310	Gossypium hirsutum (Upland Cotton) 1.1	A06:1355569-1356170	.	8,891	9.60	UGAUUGUAGGAAGGAUUGUUG		siRNA21	ShortStack
ghr-b1.1r1-20651	Gossypium hirsutum (Upland Cotton) 1.1	A06:2987730-2987754	+	584	0.63	UAGGACUCUAUAAGAAGGUAA		siRNA21	ShortStack
ghr-b1.1r1-20652	Gossypium hirsutum (Upland Cotton) 1.1	A06:2988712-2988733	+	487	0.53	UACCUUCUUAUAGAGUUCCAC		siRNA21	ShortStack
ghr-b1.1r1-20810	Gossypium hirsutum (Upland Cotton) 1.1	A06:3821620-3821754	.	286	0.31	UCACCAUGCAAGAAAGUCGUC		siRNA21	ShortStack
ghr-b1.1r1-20811	Gossypium hirsutum (Upland Cotton) 1.1	A06:3821830-3821861	.	376	0.41	UAAAUGAAAGAUUCGUCAUGC		siRNA21	ShortStack
ghr-b1.1r1-20842	Gossypium hirsutum (Upland Cotton) 1.1	A06:4151518-4151936	.	1,052	1.14	AGAGUGAGGCUUUGAGAGUUA		siRNA21	ShortStack
ghr-b1.1r1-20873	Gossypium hirsutum (Upland Cotton) 1.1	A06:4590642-4591683	.	2,235	2.41	UCUGGAUCACAUGAUGAAGCGU		siRNA21	ShortStack
ghr-b1.1r1-21121	Gossypium hirsutum (Upland Cotton) 1.1	A06:7284124-7284624	-	1,652	1.78	CCAGCCUUUUCUUCACUUAGU	miR8633	siRNA21	ShortStack
ghr-b1.1r1-21247	Gossypium hirsutum (Upland Cotton) 1.1	A06:8866526-8867154	.	710	0.77	CCAUCGAACUCUGGUCAAGUUU		siRNA21	ShortStack
ghr-b1.1r1-21468	Gossypium hirsutum (Upland Cotton) 1.1	A06:15585106-15585927	.	1,667	1.80	UUUGAACACAAACGGAUGUAA		siRNA21	ShortStack
ghr-b1.1r1-21469	Gossypium hirsutum (Upland Cotton) 1.1	A06:15586115-15587546	.	10,613	11.46	UUUGAACCUUGUAGAGCGAUC		siRNA21	ShortStack
ghr-b1.1r1-21470	Gossypium hirsutum (Upland Cotton) 1.1	A06:15588557-15589511	.	26,966	29.13	AGGAGUUAUGGUGUAGACUGA		siRNA21	ShortStack
ghr-b1.1r1-21525	Gossypium hirsutum (Upland Cotton) 1.1	A06:17251495-17251554	-	340	0.37	CUUGGAUCUAACUUUGAUUCC		siRNA21	ShortStack
ghr-b1.1r1-21527	Gossypium hirsutum (Upland Cotton) 1.1	A06:17253126-17253209	.	999	1.08	UCAGUUUGUAGUUGGAUAUGC		siRNA21	ShortStack
ghr-b1.1r1-21547	Gossypium hirsutum (Upland Cotton) 1.1	A06:17943258-17944074	.	1,324	1.43	UUUUUUACGUUUGGAUGUGCC		siRNA21	ShortStack
ghr-b1.1r1-21559	Gossypium hirsutum (Upland Cotton) 1.1	A06:18636576-18637297	.	775	0.84	CACUGUUGCAUCAUAUGUCGC		siRNA21	ShortStack
ghr-b1.1r1-21573	Gossypium hirsutum (Upland Cotton) 1.1	A06:18897899-18898117	.	338	0.37	CCAAUCGGAAAUUGCUCGGAC		siRNA21	ShortStack
ghr-b1.1r1-21652	Gossypium hirsutum (Upland Cotton) 1.1	A06:23955110-23955788	.	48,952	52.88	UCGGAAAUACAAGAACCGGUA		siRNA21	ShortStack
ghr-b1.1r1-21715	Gossypium hirsutum (Upland Cotton) 1.1	A06:28843186-28843729	-	846,307	914.17	ACAGCUUUAGAAAUCAUCCCU	miR7505	siRNA21	ShortStack
ghr-b1.1r1-21888	Gossypium hirsutum (Upland Cotton) 1.1	A06:34532315-34532444	-	1,176	1.27	GUGGAUGCAUGUGAACGGCGU		siRNA21	ShortStack
ghr-b1.1r1-21889	Gossypium hirsutum (Upland Cotton) 1.1	A06:34533031-34533159	+	5,128	5.54	GGUGGAGGUGUGUGAACGGCG		siRNA21	ShortStack
ghr-b1.1r1-21995	Gossypium hirsutum (Upland Cotton) 1.1	A06:42171069-42171648	.	581	0.63	UUGGUCGAUGAGUCCU	miR9459	siRNA21	ShortStack
ghr-b1.1r1-22200	Gossypium hirsutum (Upland Cotton) 1.1	A06:73032133-73032596	.	534	0.58	UGGUUUAGGAUAAGUAGGCGG		siRNA21	ShortStack
ghr-b1.1r1-22473	Gossypium hirsutum (Upland Cotton) 1.1	A06:93366132-93366248	-	170	0.18	UCGACGAAGACGAUGACGGUU		siRNA21	ShortStack
ghr-b1.1r1-22598	Gossypium hirsutum (Upland Cotton) 1.1	A06:95478501-95479991	.	25,466	27.51	CAGUACUGCAAGAACAUGGCA		siRNA21	ShortStack
ghr-b1.1r1-22748	Gossypium hirsutum (Upland Cotton) 1.1	A06:97234892-97235089	.	457	0.49	AUACGGAAGAAAUAAAGCUCU		siRNA21	ShortStack
ghr-b1.1r1-22880	Gossypium hirsutum (Upland Cotton) 1.1	A06:98534501-98534521	.	41	0.04	UUUUAUCUAACAGUGUGCUGC		siRNA21	ShortStack
ghr-b1.1r1-22881	Gossypium hirsutum (Upland Cotton) 1.1	A06:98534602-98535197	.	578	0.62	UACUAAGCAGAACUUCGACAC		siRNA21	ShortStack
ghr-b1.1r1-22996	Gossypium hirsutum (Upland Cotton) 1.1	A06:99288311-99288645	-	54,361	58.72	AAUGAAUCUAGUUUCUCUCUU	miR8677	siRNA21	ShortStack
ghr-b1.1r1-22998	Gossypium hirsutum (Upland Cotton) 1.1	A06:99293824-99293910	-	425	0.46	AGAAUCUAGUUUUUCUCUUGC		siRNA21	ShortStack
ghr-b1.1r1-23286	Gossypium hirsutum (Upland Cotton) 1.1	A06:101075066-101076638	.	26,549	28.68	AAAGUUGUUAUCUGGGCGUUGG		siRNA21	ShortStack
ghr-b1.1r1-23291	Gossypium hirsutum (Upland Cotton) 1.1	A06:101083645-101083857	.	145	0.16	AGAGAUUUGUUGUAUUAUUGG		siRNA21	ShortStack
ghr-b1.1r1-23309	Gossypium hirsutum (Upland Cotton) 1.1	A06:101176573-101177542	.	1,052	1.14	CUAGAACCGGAGAAGGCUUGG		siRNA21	ShortStack
ghr-b1.1r1-23468	Gossypium hirsutum (Upland Cotton) 1.1	A06:102265358-102265393	-	299	0.32	UGGCUUAGCAGUGAAGAAGAU		siRNA21	ShortStack
ghr-b1.1r1-23490	Gossypium hirsutum (Upland Cotton) 1.1	A06:102423386-102424374	.	15,533	16.78	CCAGAAGUGUUGGAACAAUAG		siRNA21	ShortStack
ghr-b1.1r1-24032	Gossypium hirsutum (Upland Cotton) 1.1	A07:1916841-1917549	-	72,464	78.28	CACCCACCACAGCAGCAGCUC		siRNA21	ShortStack
ghr-b1.1r1-24045	Gossypium hirsutum (Upland Cotton) 1.1	A07:2003948-2003973	+	602	0.65	CUCUGUUGAGGGUCGGCGUGC		siRNA21	ShortStack
ghr-b1.1r1-24366	Gossypium hirsutum (Upland Cotton) 1.1	A07:3759416-3759501	+	500	0.54	UGAGAAGGUAGAAGUACACAA		siRNA21	ShortStack
ghr-b1.1r1-24400	Gossypium hirsutum (Upland Cotton) 1.1	A07:3950689-3951280	.	1,437	1.55	UGUUUGAAGCAUUUGGGACGG		siRNA21	ShortStack
ghr-b1.1r1-24412	Gossypium hirsutum (Upland Cotton) 1.1	A07:4041613-4041770	.	557	0.60	UCUGAUAAUUGGAAUUCGGAG		siRNA21	ShortStack
ghr-b1.1r1-24413	Gossypium hirsutum (Upland Cotton) 1.1	A07:4042002-4043090	.	6,207	6.71	UUACAAACAACAUCAUCGGCA		siRNA21	ShortStack
ghr-b1.1r1-24914	Gossypium hirsutum (Upland Cotton) 1.1	A07:7693794-7694126	-	1,775	1.92	UGCCGGUACCACUUGAGCACC		siRNA21	ShortStack
ghr-b1.1r1-24925	Gossypium hirsutum (Upland Cotton) 1.1	A07:7713670-7713818	-	649	0.70	AGCAAAAGCAGCUACUCCGGACA		siRNA21	ShortStack
ghr-b1.1r1-25163	Gossypium hirsutum (Upland Cotton) 1.1	A07:9556147-9557009	.	1,844	1.99	AGGGUUGUGAAAGAAGGAUGG		siRNA21	ShortStack
ghr-b1.1r1-25174	Gossypium hirsutum (Upland Cotton) 1.1	A07:9681897-9682067	.	267	0.29	UACGGUCUGUCUGCGCGGCUA		siRNA21	ShortStack
ghr-b1.1r1-25423	Gossypium hirsutum (Upland Cotton) 1.1	A07:13794072-13794166	-	685	0.74	GUAAAUUAGUCCUUGUAGGUU		siRNA21	ShortStack
ghr-b1.1r1-25435	Gossypium hirsutum (Upland Cotton) 1.1	A07:13857970-13857993	+	294	0.32	UACUUGAGAAGAUUCCGACAA		siRNA21	ShortStack
ghr-b1.1r1-25468	Gossypium hirsutum (Upland Cotton) 1.1	A07:14253516-14253622	.	152	0.16	UUCAAGACGGUGAACAAUAGU		siRNA21	ShortStack
ghr-b1.1r1-25496	Gossypium hirsutum (Upland Cotton) 1.1	A07:14545403-14545431	.	846	0.91	UACUUGAGAAGAUUCCGACAA		siRNA21	ShortStack
ghr-b1.1r1-25646	Gossypium hirsutum (Upland Cotton) 1.1	A07:16517750-16518146	.	2,428	2.62	CUCGGGAAAGAUAAAUGUGCCU		siRNA21	ShortStack
ghr-b1.1r1-25647	Gossypium hirsutum (Upland Cotton) 1.1	A07:16520256-16520454	.	694	0.75	CAAGAAGAUUCUCGGCAUGGAU		siRNA21	ShortStack
ghr-b1.1r1-25684	Gossypium hirsutum (Upland Cotton) 1.1	A07:17120410-17120567	.	453	0.49	UAGUAGAACUAAAUAGAGGAG		siRNA21	ShortStack
ghr-b1.1r1-25688	Gossypium hirsutum (Upland Cotton) 1.1	A07:17259398-17260446	.	1,025	1.11	CAUCGCCAGUGGGACCGACGGA		siRNA21	ShortStack
ghr-b1.1r1-25802	Gossypium hirsutum (Upland Cotton) 1.1	A07:18625419-18625595	+	3,694	3.99	UAGGACGGACAAUGAAGGGGA		siRNA21	ShortStack
ghr-b1.1r1-25897	Gossypium hirsutum (Upland Cotton) 1.1	A07:20203130-20203172	+	504	0.54	UCGUCAUCGUCUCCGAUUUUC		siRNA21	ShortStack
ghr-b1.1r1-26264	Gossypium hirsutum (Upland Cotton) 1.1	A07:27651289-27651333	+	1,096	1.18	GUUUCCUGCGGUCUAUCUACUCUU		siRNA21	ShortStack
ghr-b1.1r1-26265	Gossypium hirsutum (Upland Cotton) 1.1	A07:27657516-27658103	.	1,013	1.09	UGACAUGUCAGCAGAGACCUC		siRNA21	ShortStack
ghr-b1.1r1-26348	Gossypium hirsutum (Upland Cotton) 1.1	A07:29761503-29761527	+	159	0.17	AUACCGUAGAAUCCAUUUCAA		siRNA21	ShortStack
ghr-b1.1r1-26524	Gossypium hirsutum (Upland Cotton) 1.1	A07:39395474-39395573	.	80	0.09	UGUCUCAACCCAAUCUUUAGA		siRNA21	ShortStack
ghr-b1.1r1-26803	Gossypium hirsutum (Upland Cotton) 1.1	A07:62273366-62273506	.	571	0.62	UUGGAGACGACCCAUGGGAGG		siRNA21	ShortStack
ghr-b1.1r1-27012	Gossypium hirsutum (Upland Cotton) 1.1	A07:68390406-68390520	.	226	0.24	CUCUCUAUGCUCGGACGUUGC		siRNA21	ShortStack
ghr-b1.1r1-27020	Gossypium hirsutum (Upland Cotton) 1.1	A07:68603682-68604258	.	57,120	61.70	UUGCAAGGUCAAGAAAACUCG		siRNA21	ShortStack
ghr-b1.1r1-27041	Gossypium hirsutum (Upland Cotton) 1.1	A07:68671926-68672007	.	880	0.95	AAAUGGUUGAGACUAGGACGG		siRNA21	ShortStack
ghr-b1.1r1-27046	Gossypium hirsutum (Upland Cotton) 1.1	A07:68675943-68676127	+	7,041	7.61	UCCGUGAAUCGGAGGCGGGGU		siRNA21	ShortStack
ghr-b1.1r1-27047	Gossypium hirsutum (Upland Cotton) 1.1	A07:68676208-68676381	+	7,007	7.57	AGCGUGGCCUAUCGAUCCUUC		siRNA21	ShortStack
ghr-b1.1r1-27056	Gossypium hirsutum (Upland Cotton) 1.1	A07:68714818-68714863	+	601	0.65	GAUGAAGAACGUAGCGAAAUU		siRNA21	ShortStack
ghr-b1.1r1-27108	Gossypium hirsutum (Upland Cotton) 1.1	A07:68816286-68816457	+	2,988	3.23	GCCUUUGUCGCUUCGAUUCGU		siRNA21	ShortStack
ghr-b1.1r1-27128	Gossypium hirsutum (Upland Cotton) 1.1	A07:68842150-68842204	+	253	0.27	CUUCGGCCGGCCGAUCCGGGU		siRNA21	ShortStack
ghr-b1.1r1-27301	Gossypium hirsutum (Upland Cotton) 1.1	A07:72527085-72527766	.	559	0.60	UAGGUUGAACUUUAAAACGGA		siRNA21	ShortStack
ghr-b1.1r1-27390	Gossypium hirsutum (Upland Cotton) 1.1	A07:73047410-73048908	.	152,415	164.64	CAAACUGGGGAUCGAUUAUGG		siRNA21	ShortStack
ghr-b1.1r1-27391	Gossypium hirsutum (Upland Cotton) 1.1	A07:73048992-73049308	.	47,977	51.82	UGGCAGAUGUCCGGUACUUGA		siRNA21	ShortStack
ghr-b1.1r1-27577	Gossypium hirsutum (Upland Cotton) 1.1	A07:74156287-74156308	-	517	0.56	GAAAAUAAGAAAACGGACUUG		siRNA21	ShortStack
ghr-b1.1r1-27657	Gossypium hirsutum (Upland Cotton) 1.1	A07:74532322-74533268	.	1,217	1.32	UUCGACCAGGUAGAUGAUAUU		siRNA21	ShortStack
ghr-b1.1r1-27904	Gossypium hirsutum (Upland Cotton) 1.1	A07:76266101-76266819	.	2,301	2.49	UGUAGAUCAAACCCAGACUGC		siRNA21	ShortStack
ghr-b1.1r1-28156	Gossypium hirsutum (Upland Cotton) 1.1	A07:77764656-77764924	+	10,656	11.51	UGAUUGAGCCGUGCCAAUAUC	miR171	siRNA21	ShortStack
ghr-b1.1r1-28174	Gossypium hirsutum (Upland Cotton) 1.1	A07:77852904-77853508	.	7,849	8.48	AGGCUCCGAGGGUAACUUCGC		siRNA21	ShortStack
ghr-b1.1r1-28181	Gossypium hirsutum (Upland Cotton) 1.1	A07:77904022-77904251	.	548	0.59	AUGUUAGACCUUUUCUUCCUC	miR169	siRNA21	ShortStack
ghr-b1.1r1-28209	Gossypium hirsutum (Upland Cotton) 1.1	A07:78244801-78245089	.	3,196	3.45	UCCAGAUUGGUAGGAUCGGCC		siRNA21	ShortStack
ghr-b1.1r1-28298	Gossypium hirsutum (Upland Cotton) 1.1	A08:477868-477895	-	377	0.41	UGCAUGUUGACCCCUCUACUC		siRNA21	ShortStack
ghr-b1.1r1-28515	Gossypium hirsutum (Upland Cotton) 1.1	A08:1507780-1507831	.	298	0.32	UGUAGUUGUUGCGGUGCCUGA		siRNA21	ShortStack
ghr-b1.1r1-28516	Gossypium hirsutum (Upland Cotton) 1.1	A08:1507947-1508042	-	609	0.66	UCACCGGCCAUACUGAAGACU		siRNA21	ShortStack
ghr-b1.1r1-28517	Gossypium hirsutum (Upland Cotton) 1.1	A08:1509107-1509176	-	846	0.91	UAGAGGAGGUAGACGGGUUGA		siRNA21	ShortStack
ghr-b1.1r1-28518	Gossypium hirsutum (Upland Cotton) 1.1	A08:1509247-1509317	.	317	0.34	UUGGAACUGAAGAGAUUGUCU		siRNA21	ShortStack
ghr-b1.1r1-28519	Gossypium hirsutum (Upland Cotton) 1.1	A08:1509425-1509482	-	657	0.71	UGAUGGGGGUAGCAUAGCAUU		siRNA21	ShortStack
ghr-b1.1r1-28520	Gossypium hirsutum (Upland Cotton) 1.1	A08:1510153-1510280	.	903	0.98	ACGGAGGAAUGCAUUUGGUUC		siRNA21	ShortStack
ghr-b1.1r1-28521	Gossypium hirsutum (Upland Cotton) 1.1	A08:1510373-1510468	.	406	0.44	UUUUGGACCUGAGCAACUUGC		siRNA21	ShortStack
ghr-b1.1r1-28523	Gossypium hirsutum (Upland Cotton) 1.1	A08:1511290-1511387	-	604	0.65	UGCUCAAUGCAUCUCGUCGGU		siRNA21	ShortStack
ghr-b1.1r1-28524	Gossypium hirsutum (Upland Cotton) 1.1	A08:1513295-1513492	.	1,139	1.23	CAUCGUCGGAAUGAGCGGAGC		siRNA21	ShortStack
ghr-b1.1r1-28564	Gossypium hirsutum (Upland Cotton) 1.1	A08:1726661-1726765	-	1,473	1.59	UGGGUUUGCAGAUAUUAUUGU		siRNA21	ShortStack
ghr-b1.1r1-28625	Gossypium hirsutum (Upland Cotton) 1.1	A08:2057705-2057851	.	358	0.39	UUGGAGUUGUGAGCAGGUAUU		siRNA21	ShortStack
ghr-b1.1r1-28987	Gossypium hirsutum (Upland Cotton) 1.1	A08:4357910-4358127	+	14,838	16.03	UUCAUGGACGUUGAUAAGAUC		siRNA21	ShortStack
ghr-b1.1r1-29075	Gossypium hirsutum (Upland Cotton) 1.1	A08:5082368-5082806	.	648	0.70	AUAGAUGAGAGGGGACCUCCUG		siRNA21	ShortStack
ghr-b1.1r1-29259	Gossypium hirsutum (Upland Cotton) 1.1	A08:6373982-6374437	-	14,537	15.70	AAACUAUAGCGGCCACCUUGU		siRNA21	ShortStack
ghr-b1.1r1-29604	Gossypium hirsutum (Upland Cotton) 1.1	A08:12526102-12526328	.	2,392	2.58	AGACUUGGAAUUCUGUCUCCU		siRNA21	ShortStack
ghr-b1.1r1-29653	Gossypium hirsutum (Upland Cotton) 1.1	A08:13544328-13544958	-	6,918	7.47	AGCGACGUUGCUUUUUGAUCU		siRNA21	ShortStack
ghr-b1.1r1-29664	Gossypium hirsutum (Upland Cotton) 1.1	A08:13792881-13793836	.	3,186	3.44	UUUGGACAAUGGAUGAAGAUU	miR6284	siRNA21	ShortStack
ghr-b1.1r1-29727	Gossypium hirsutum (Upland Cotton) 1.1	A08:15737822-15738647	.	17,796	19.22	UGGAGAAGUAGGGCACGUGCA	miR164	siRNA21	ShortStack
ghr-b1.1r1-29871	Gossypium hirsutum (Upland Cotton) 1.1	A08:31675257-31675277	+	518	0.56	UAGCUGAGAGUUCCAAAUUGC		siRNA21	ShortStack
ghr-b1.1r1-29902	Gossypium hirsutum (Upland Cotton) 1.1	A08:34214468-34214488	+	2,067	2.23	CGACUCUCGGCAACGGCGCCA		siRNA21	ShortStack
ghr-b1.1r1-30004	Gossypium hirsutum (Upland Cotton) 1.1	A08:51694251-51694515	.	307	0.33	UCGAAGGGACGUACAAUUUCA		siRNA21	ShortStack
ghr-b1.1r1-30029	Gossypium hirsutum (Upland Cotton) 1.1	A08:55585050-55585090	-	200	0.22	GUUCGGAAUUUUUGGAAGAAUU		siRNA21	ShortStack
ghr-b1.1r1-30037	Gossypium hirsutum (Upland Cotton) 1.1	A08:57523751-57523946	.	415	0.45	AUGAAUCUGGUGACUAUUGGUAUG		siRNA21	ShortStack
ghr-b1.1r1-30046	Gossypium hirsutum (Upland Cotton) 1.1	A08:58484903-58484925	+	4,666	5.04	UGGACAGAAGAUAGAGAGCAC	miR156	siRNA21	ShortStack
ghr-b1.1r1-30198	Gossypium hirsutum (Upland Cotton) 1.1	A08:71013457-71014003	.	1,758	1.90	UGUAGAGCUUAUCGACCGGGU		siRNA21	ShortStack
ghr-b1.1r1-30203	Gossypium hirsutum (Upland Cotton) 1.1	A08:71176105-71176142	.	367	0.40	UUUAUUUGGAAGAACCGGCGC		siRNA21	ShortStack
ghr-b1.1r1-30313	Gossypium hirsutum (Upland Cotton) 1.1	A08:74959228-74959497	.	4,798	5.18	AAGAUCCUUGGGAACUACCGG		siRNA21	ShortStack
ghr-b1.1r1-30314	Gossypium hirsutum (Upland Cotton) 1.1	A08:74959600-74959852	.	11,356	12.27	AACGGGUGAAGAGGACAACGG		siRNA21	ShortStack
ghr-b1.1r1-30315	Gossypium hirsutum (Upland Cotton) 1.1	A08:74960204-74960941	.	14,271	15.42	ACCAGACUUGGCUGACAACUU		siRNA21	ShortStack
ghr-b1.1r1-30316	Gossypium hirsutum (Upland Cotton) 1.1	A08:74962089-74963160	.	3,269	3.53	UGACUUCAAGUUCUGUAAAGC		siRNA21	ShortStack
ghr-b1.1r1-30372	Gossypium hirsutum (Upland Cotton) 1.1	A08:79863862-79864045	-	90,590	97.85	UUUGCAUGAACUAGGAGACGU		siRNA21	ShortStack
ghr-b1.1r1-30400	Gossypium hirsutum (Upland Cotton) 1.1	A08:80620030-80620052	+	620	0.67	UCAGGUACCUGAAGUAGCGCG	miR275	siRNA21	ShortStack
ghr-b1.1r1-30455	Gossypium hirsutum (Upland Cotton) 1.1	A08:81821250-81821331	+	2,521	2.72	UAAUAUCAAGCAACUUCACAC		siRNA21	ShortStack
ghr-b1.1r1-30456	Gossypium hirsutum (Upland Cotton) 1.1	A08:81822236-81822267	-	663	0.72	ACACUAAUAUCAAGCAACUUC		siRNA21	ShortStack
ghr-b1.1r1-30608	Gossypium hirsutum (Upland Cotton) 1.1	A08:84457927-84458287	.	1,201	1.30	UCAUUAUAAACGAGCUGAGCA		siRNA21	ShortStack
ghr-b1.1r1-30610	Gossypium hirsutum (Upland Cotton) 1.1	A08:84698917-84700503	.	2,521	2.72	UGAAUGGGAAGAUAUACUGAA		siRNA21	ShortStack
ghr-b1.1r1-30611	Gossypium hirsutum (Upland Cotton) 1.1	A08:84700609-84701108	.	372	0.40	UUGAGGACACUUCAUGACUGC		siRNA21	ShortStack
ghr-b1.1r1-30677	Gossypium hirsutum (Upland Cotton) 1.1	A08:86097565-86098562	.	1,318	1.42	CCACAAGGGACGAGAAGGUGA		siRNA21	ShortStack
ghr-b1.1r1-30760	Gossypium hirsutum (Upland Cotton) 1.1	A08:88455553-88456800	.	1,339	1.45	CCAAGCUUGAAAGACUCCUGGA		siRNA21	ShortStack
ghr-b1.1r1-30849	Gossypium hirsutum (Upland Cotton) 1.1	A08:89990042-89990196	.	6,012	6.49	UGACAGGGACGGGAACAGCCU		siRNA21	ShortStack
ghr-b1.1r1-30989	Gossypium hirsutum (Upland Cotton) 1.1	A08:92269527-92270302	.	57,334	61.93	CUUCUUCCAUCUGGACAGUUU		siRNA21	ShortStack
ghr-b1.1r1-31501	Gossypium hirsutum (Upland Cotton) 1.1	A08:97405056-97405652	.	24,235	26.18	UUGGUAACAAGAAGACUUUGC		siRNA21	ShortStack
ghr-b1.1r1-31502	Gossypium hirsutum (Upland Cotton) 1.1	A08:97405947-97407539	.	33,103	35.76	UAGUUGAUGUGGAUGAGGGCU		siRNA21	ShortStack
ghr-b1.1r1-31658	Gossypium hirsutum (Upland Cotton) 1.1	A08:98479192-98479274	-	2,967	3.21	CGGUCCCCGGCAACGGCGCCA	miR8175	siRNA21	ShortStack
ghr-b1.1r1-31819	Gossypium hirsutum (Upland Cotton) 1.1	A08:99574329-99576272	.	12,775	13.80	CGGAACCUGAGAAACACGCGG		siRNA21	ShortStack
ghr-b1.1r1-31947	Gossypium hirsutum (Upland Cotton) 1.1	A08:100399621-100400653	+	1,360	1.47	CAGAGGUGGUAGAAGAAGGUGA		siRNA21	ShortStack
ghr-b1.1r1-32160	Gossypium hirsutum (Upland Cotton) 1.1	A08:101763987-101764370	+	1,197	1.29	CAUUGGGGUCUCAGAAUGUUG		siRNA21	ShortStack
ghr-b1.1r1-32235	Gossypium hirsutum (Upland Cotton) 1.1	A08:102273904-102273924	.	654	0.71	UCCCACAGCUUUCUUGAACUC	miR396	siRNA21	ShortStack
ghr-b1.1r1-32241	Gossypium hirsutum (Upland Cotton) 1.1	A08:102299963-102300506	.	2,876	3.11	AAGCAUUCGGGACGGAUUCUG		siRNA21	ShortStack
ghr-b1.1r1-32402	Gossypium hirsutum (Upland Cotton) 1.1	A08:103041555-103042046	+	6,127	6.62	UCGAGAAUGACUAUAGGUGAC		siRNA21	ShortStack
ghr-b1.1r1-32437	Gossypium hirsutum (Upland Cotton) 1.1	A08:103213757-103214607	.	869	0.94	AUCGGAAGGUGGAGAUAACGG		siRNA21	ShortStack
ghr-b1.1r1-32464	Gossypium hirsutum (Upland Cotton) 1.1	A08:103381948-103382172	+	2,546	2.75	GCAUAGACACUUUGGGCACAA	miR8680	siRNA21	ShortStack
ghr-b1.1r1-32487	Gossypium hirsutum (Upland Cotton) 1.1	A08:103597164-103597298	.	3,951	4.27	AUAUGUUCUAGCUUGGGGAUU		siRNA21	ShortStack
ghr-b1.1r1-32489	Gossypium hirsutum (Upland Cotton) 1.1	A09:7227-7319	.	1,451	1.57	AUAUGUUCUAGCUUGGGGAUU		siRNA21	ShortStack
ghr-b1.1r1-32556	Gossypium hirsutum (Upland Cotton) 1.1	A09:766684-766723	+	613	0.66	UAGACUGUAAGGUAGACUUCU		siRNA21	ShortStack
ghr-b1.1r1-32715	Gossypium hirsutum (Upland Cotton) 1.1	A09:2311328-2311491	-	2,376	2.57	CAGAAACAAAGAAAGAAGGCA		siRNA21	ShortStack
ghr-b1.1r1-32716	Gossypium hirsutum (Upland Cotton) 1.1	A09:2311648-2311966	-	32,783	35.41	UUUUGGAAGAAUUUCAGCUGG	miR8718	siRNA21	ShortStack
ghr-b1.1r1-32823	Gossypium hirsutum (Upland Cotton) 1.1	A09:3019362-3019410	+	419	0.45	CGAGAAUUAGCGGCGCUUUUG		siRNA21	ShortStack
ghr-b1.1r1-33140	Gossypium hirsutum (Upland Cotton) 1.1	A09:8135924-8136148	.	178	0.19	CUUCCAAGGAACUCACAGACG		siRNA21	ShortStack
ghr-b1.1r1-33160	Gossypium hirsutum (Upland Cotton) 1.1	A09:8756616-8757006	+	6,685	7.22	UUUAAAACAUAAGAGGACUUA		siRNA21	ShortStack
ghr-b1.1r1-33161	Gossypium hirsutum (Upland Cotton) 1.1	A09:8758684-8759110	+	15,355	16.59	AAAGGUGAGUCAUUUUAGAACU		siRNA21	ShortStack
ghr-b1.1r1-33897	Gossypium hirsutum (Upland Cotton) 1.1	A09:52353487-52353601	+	2,657	2.87	CCGACCUUAGCUCAGUUGGUA	miR6478	siRNA21	ShortStack
ghr-b1.1r1-33900	Gossypium hirsutum (Upland Cotton) 1.1	A09:52452229-52453023	.	450	0.49	GAUGUUGAAACUGAGAGUUCA		siRNA21	ShortStack
ghr-b1.1r1-34050	Gossypium hirsutum (Upland Cotton) 1.1	A09:53580487-53580603	+	5,474	5.91	CAACGGUGGAGGUAUUGUGCC	miR8759	siRNA21	ShortStack
ghr-b1.1r1-34051	Gossypium hirsutum (Upland Cotton) 1.1	A09:53580682-53580772	.	1,100	1.19	ACCAUUGAGGAGUUCGCCGGC		siRNA21	ShortStack
ghr-b1.1r1-34206	Gossypium hirsutum (Upland Cotton) 1.1	A09:55113633-55113717	.	537	0.58	CGAACUUUGGUCUAAUGGCUU		siRNA21	ShortStack
ghr-b1.1r1-34371	Gossypium hirsutum (Upland Cotton) 1.1	A09:57462297-57463052	-	15,316	16.54	UGAAAUAGGGCAACUGCAAAA		siRNA21	ShortStack
ghr-b1.1r1-34554	Gossypium hirsutum (Upland Cotton) 1.1	A09:59825304-59825550	.	747	0.81	AUACUGUAAGCCGCCCGCUAG		siRNA21	ShortStack
ghr-b1.1r1-34655	Gossypium hirsutum (Upland Cotton) 1.1	A09:60718110-60718742	.	729	0.79	UCUGUAAGACAAGAUCAGUGC		siRNA21	ShortStack
ghr-b1.1r1-34905	Gossypium hirsutum (Upland Cotton) 1.1	A09:62994598-62994639	-	1,755	1.90	GAUGGAGAUGUGGACUGGUAA		siRNA21	ShortStack
ghr-b1.1r1-34911	Gossypium hirsutum (Upland Cotton) 1.1	A09:63031343-63032348	.	750	0.81	CAAGAACGGGAAUUCGGCGUG		siRNA21	ShortStack
ghr-b1.1r1-35018	Gossypium hirsutum (Upland Cotton) 1.1	A09:63900315-63900347	-	627	0.68	AAGGACUGAAAGGAGUGAGGA		siRNA21	ShortStack
ghr-b1.1r1-35472	Gossypium hirsutum (Upland Cotton) 1.1	A09:67982836-67982939	+	1,190	1.29	UAUGGAUUUUACCUCGUUGUU		siRNA21	ShortStack
ghr-b1.1r1-35478	Gossypium hirsutum (Upland Cotton) 1.1	A09:68018925-68020000	.	37,531	40.54	CUACGACUGCAUUAAACCUGG		siRNA21	ShortStack
ghr-b1.1r1-35520	Gossypium hirsutum (Upland Cotton) 1.1	A09:68287588-68287669	.	1,339	1.45	UCCGGAAGAACAAUACUUUGG		siRNA21	ShortStack
ghr-b1.1r1-35624	Gossypium hirsutum (Upland Cotton) 1.1	A09:69019316-69019493	.	255	0.28	UCUUUUGCAGAGCUGAGGUUG		siRNA21	ShortStack
ghr-b1.1r1-35631	Gossypium hirsutum (Upland Cotton) 1.1	A09:69141290-69141614	-	44,630	48.21	UUUGGAUUGAAGGGAGCUCUA	miR159	siRNA21	ShortStack
ghr-b1.1r1-36026	Gossypium hirsutum (Upland Cotton) 1.1	A09:72035136-72036455	.	1,233	1.33	UUUCCAAGAACUCGAACUUCU		siRNA21	ShortStack
ghr-b1.1r1-36030	Gossypium hirsutum (Upland Cotton) 1.1	A09:72053763-72053898	-	504	0.54	UCUGGAGUGAAAGGAUUUCGU		siRNA21	ShortStack
ghr-b1.1r1-36298	Gossypium hirsutum (Upland Cotton) 1.1	A09:74051275-74052218	.	481	0.52	AAACCAGACCACAUUCGGAC		siRNA21	ShortStack
ghr-b1.1r1-36329	Gossypium hirsutum (Upland Cotton) 1.1	A09:74252874-74252922	-	915	0.99	CUGAUCGGAAAACAUUCAACC		siRNA21	ShortStack
ghr-b1.1r1-36567	Gossypium hirsutum (Upland Cotton) 1.1	A10:844814-844912	.	649	0.70	CAGAAGGAUACACAGAUGCUGG		siRNA21	ShortStack
ghr-b1.1r1-36597	Gossypium hirsutum (Upland Cotton) 1.1	A10:976682-976862	+	9,871	10.66	UUGAGCCGUGCCAAUAUCACG	miR171	siRNA21	ShortStack
ghr-b1.1r1-36627	Gossypium hirsutum (Upland Cotton) 1.1	A10:1121779-1122278	.	27,375	29.57	CUUUUAACGGGUGAUGUGGGCAGA		siRNA21	ShortStack
ghr-b1.1r1-36658	Gossypium hirsutum (Upland Cotton) 1.1	A10:1350492-1350697	.	1,615	1.75	UGACAGUCAGAGCGUUAUUCA		siRNA21	ShortStack
ghr-b1.1r1-36682	Gossypium hirsutum (Upland Cotton) 1.1	A10:1517599-1517689	+	276	0.30	AAGUAGCGGAGGAACUAACAG		siRNA21	ShortStack
ghr-b1.1r1-36683	Gossypium hirsutum (Upland Cotton) 1.1	A10:1518172-1518281	+	303	0.33	UGGAGCUUUUGUAGAUGGUAG		siRNA21	ShortStack
ghr-MIR399b-m1	Gossypium hirsutum (Upland Cotton) 1.1	A10:2992569-2992696	+	1	0.00	CGCCAAUGGAGAUUUGUCCGG	miR399	siRNA21	miRBase21-BestBlastHit
ghr-b1.1r1-37074	Gossypium hirsutum (Upland Cotton) 1.1	A10:4109630-4110097	.	57,439	62.05	AGUUCGUGAACAGUGUCGGGU		siRNA21	ShortStack
ghr-b1.1r1-37075	Gossypium hirsutum (Upland Cotton) 1.1	A10:4110301-4110478	.	7,649	8.26	AGAAGAACAUCAUUCUCCCGG		siRNA21	ShortStack
ghr-b1.1r1-37093	Gossypium hirsutum (Upland Cotton) 1.1	A10:4200723-4200747	-	5,763	6.23	UCAGAUCAUCUUGCAGCUUCA	miR167	siRNA21	ShortStack
ghr-b1.1r1-37385	Gossypium hirsutum (Upland Cotton) 1.1	A10:6834618-6834714	+	333	0.36	UGAUUGGAGAAGGCAUGGAUC		siRNA21	ShortStack
ghr-b1.1r1-37386	Gossypium hirsutum (Upland Cotton) 1.1	A10:6835700-6836354	.	6,946	7.50	AAAAUAGAAGACUGCUUUUGC		siRNA21	ShortStack
ghr-b1.1r1-37387	Gossypium hirsutum (Upland Cotton) 1.1	A10:6838231-6838945	.	4,825	5.21	AAGAGCUGCUGUUUAUAACUC		siRNA21	ShortStack
ghr-b1.1r1-38261	Gossypium hirsutum (Upland Cotton) 1.1	A10:34743388-34743485	-	117	0.13	AAAAGUUACGUCAAGAUGUGU		siRNA21	ShortStack
ghr-b1.1r1-38530	Gossypium hirsutum (Upland Cotton) 1.1	A10:59726046-59726723	.	936	1.01	UUCUAUGGUGUGUUCUCCAGC		siRNA21	ShortStack
ghr-b1.1r1-38599	Gossypium hirsutum (Upland Cotton) 1.1	A10:62386450-62386471	-	245	0.27	ACAGCUUUAGAAAUCAUUCCC		siRNA21	ShortStack
ghr-b1.1r1-38626	Gossypium hirsutum (Upland Cotton) 1.1	A10:62822752-62822797	+	2,926	3.16	ACAUUAGAAUACGGAACUUGC		siRNA21	ShortStack
ghr-b1.1r1-38698	Gossypium hirsutum (Upland Cotton) 1.1	A10:65118000-65118444	.	449	0.49	AGUAGCGGUAGACAUGUACAA		siRNA21	ShortStack
ghr-b1.1r1-38699	Gossypium hirsutum (Upland Cotton) 1.1	A10:65118782-65119061	.	216	0.23	UCAAAGUAGACCGUGUAAAAU		siRNA21	ShortStack
ghr-b1.1r1-38722	Gossypium hirsutum (Upland Cotton) 1.1	A10:65635570-65635933	.	430	0.46	CAAACACUGCAAAAUCGUCUU		siRNA21	ShortStack
ghr-b1.1r1-38905	Gossypium hirsutum (Upland Cotton) 1.1	A10:72217157-72217320	+	1,460	1.58	CAGGAAGAGGAAGAUGAAAUA		siRNA21	ShortStack
ghr-b1.1r1-38906	Gossypium hirsutum (Upland Cotton) 1.1	A10:72217810-72217982	+	1,027	1.11	UUUGGUGAUAGUGGAAAUGGG		siRNA21	ShortStack
ghr-b1.1r1-39087	Gossypium hirsutum (Upland Cotton) 1.1	A10:78955070-78955284	+	1,018	1.10	UGAACGUACGGCCACCCACCA		siRNA21	ShortStack
ghr-b1.1r1-39131	Gossypium hirsutum (Upland Cotton) 1.1	A10:80211884-80212007	-	229	0.25	CAUUGGAGAGUUGGAUGGUCA		siRNA21	ShortStack
ghr-b1.1r1-39287	Gossypium hirsutum (Upland Cotton) 1.1	A10:85165966-85166259	.	1,193	1.29	AUCGUGUGGAAGGUUGUGUAU		siRNA21	ShortStack
ghr-b1.1r1-39288	Gossypium hirsutum (Upland Cotton) 1.1	A10:85166362-85166968	.	381,558	412.16	UUCUUGACCUUGUAAGACCCA		siRNA21	ShortStack
ghr-b1.1r1-39299	Gossypium hirsutum (Upland Cotton) 1.1	A10:85291726-85291787	+	492	0.53	CAUGCCACAGCUCCUCCUGCA		siRNA21	ShortStack
ghr-b1.1r1-39485	Gossypium hirsutum (Upland Cotton) 1.1	A10:88066471-88066507	-	1,326	1.43	UUUAGAAAUCAUUCCUUCCUU		siRNA21	ShortStack
ghr-b1.1r1-39499	Gossypium hirsutum (Upland Cotton) 1.1	A10:88125564-88126153	.	1,109	1.20	UAACGGGCUCCAGAUUCACGG		siRNA21	ShortStack
ghr-b1.1r1-39597	Gossypium hirsutum (Upland Cotton) 1.1	A10:89950942-89951397	.	1,705	1.84	UGACAACGCAACUGUAGACUGU		siRNA21	ShortStack
ghr-b1.1r1-39617	Gossypium hirsutum (Upland Cotton) 1.1	A10:90274877-90276780	.	2,131	2.30	UAGACAAGCAAGCAUCAUCUG		siRNA21	ShortStack
ghr-b1.1r1-39936	Gossypium hirsutum (Upland Cotton) 1.1	A10:93358027-93358196	-	396	0.43	UUGUGGGUGUACGGGGAUGAU		siRNA21	ShortStack
ghr-b1.1r1-39978	Gossypium hirsutum (Upland Cotton) 1.1	A10:93734560-93735175	.	615	0.66	UCAAGCAAAGUUGGACAAGAC		siRNA21	ShortStack
ghr-b1.1r1-40213	Gossypium hirsutum (Upland Cotton) 1.1	A10:95497354-95497846	.	1,047	1.13	CUGUGAAGUGUCGAACAAUAU		siRNA21	ShortStack
ghr-b1.1r1-40335	Gossypium hirsutum (Upland Cotton) 1.1	A10:97095718-97096091	.	416	0.45	AAAUGAUCGAGACAAGGGUGU		siRNA21	ShortStack
ghr-b1.1r1-40336	Gossypium hirsutum (Upland Cotton) 1.1	A10:97096973-97097870	.	3,083	3.33	UUCUAAAUCUAUCGUACAAGU		siRNA21	ShortStack
ghr-b1.1r1-40470	Gossypium hirsutum (Upland Cotton) 1.1	A10:97921192-97922061	.	979	1.06	UCUCUUGAGGGACUUGUGCAU		siRNA21	ShortStack
ghr-b1.1r1-40472	Gossypium hirsutum (Upland Cotton) 1.1	A10:97927740-97927946	.	381	0.41	UGUUCCUGUAUGGUCUCGCCU		siRNA21	ShortStack
ghr-b1.1r1-40496	Gossypium hirsutum (Upland Cotton) 1.1	A10:98314112-98315199	+	127,423	137.64	CUGUGCUGUUGUAAUAGGUUG		siRNA21	ShortStack
ghr-b1.1r1-40572	Gossypium hirsutum (Upland Cotton) 1.1	A10:98787111-98787366	.	177	0.19	UUGAUGAUGUUAGUAACCCAG		siRNA21	ShortStack
ghr-b1.1r1-40574	Gossypium hirsutum (Upland Cotton) 1.1	A10:98839944-98839986	+	739	0.80	UAGAGAUAAGUAGAGAUAGAC		siRNA21	ShortStack
ghr-b1.1r1-40577	Gossypium hirsutum (Upland Cotton) 1.1	A10:98879295-98880327	.	2,183	2.36	UUAAACGCACAAGUAGAAAAU		siRNA21	ShortStack
ghr-b1.1r1-40578	Gossypium hirsutum (Upland Cotton) 1.1	A10:98881804-98882113	.	475	0.51	CAGAAUGGAUUGAAGGAAUAA		siRNA21	ShortStack
ghr-b1.1r1-40580	Gossypium hirsutum (Upland Cotton) 1.1	A10:98923619-98924831	.	24,093	26.03	UUAAACGCACAAGUAGAAAAU		siRNA21	ShortStack
ghr-b1.1r1-40581	Gossypium hirsutum (Upland Cotton) 1.1	A10:98926275-98926596	.	4,764	5.15	UACAUGUAGACCAAGUUGGCG		siRNA21	ShortStack
ghr-b1.1r1-40582	Gossypium hirsutum (Upland Cotton) 1.1	A10:98926763-98928226	.	4,093	4.42	UUCUGGGAAUUCGGCGACUAG		siRNA21	ShortStack
ghr-b1.1r1-40588	Gossypium hirsutum (Upland Cotton) 1.1	A10:99052336-99053228	.	1,895	2.05	UUGAUGAUGUUAGUAACCCAG		siRNA21	ShortStack
ghr-b1.1r1-40592	Gossypium hirsutum (Upland Cotton) 1.1	A10:99084654-99084923	.	726	0.78	UAGACUGUAGUGUAAACUUCU		siRNA21	ShortStack
ghr-b1.1r1-40593	Gossypium hirsutum (Upland Cotton) 1.1	A10:99088059-99088464	.	217	0.23	UCAUCAAGGACAACAAGUACU		siRNA21	ShortStack
ghr-b1.1r1-40599	Gossypium hirsutum (Upland Cotton) 1.1	A10:99248961-99249280	.	493	0.53	UUAAACAUUUUGGUCGUGGAA		siRNA21	ShortStack
ghr-b1.1r1-40607	Gossypium hirsutum (Upland Cotton) 1.1	A10:99318372-99318417	-	1,032	1.12	AAGGAUUGUUGAAAGGUGUAA		siRNA21	ShortStack
ghr-b1.1r1-40608	Gossypium hirsutum (Upland Cotton) 1.1	A10:99318607-99318682	.	63	0.07	UUGGAUUCCAAGACUCCCAAU		siRNA21	ShortStack
ghr-b1.1r1-40610	Gossypium hirsutum (Upland Cotton) 1.1	A10:99319474-99319693	.	642	0.69	CAGCAGGGUCUAGACAUUGCA		siRNA21	ShortStack
ghr-b1.1r1-40616	Gossypium hirsutum (Upland Cotton) 1.1	A10:99428540-99428600	.	426	0.46	AGAGCGUAUGAAUCGAACAUUGU		siRNA21	ShortStack
ghr-b1.1r1-40671	Gossypium hirsutum (Upland Cotton) 1.1	A10:99752511-99753846	-	14,628	15.80	GAUGAACCAAGGAUAAGGACUAAC		siRNA21	ShortStack
ghr-b1.1r1-40850	Gossypium hirsutum (Upland Cotton) 1.1	A10:100501049-100501077	+	492	0.53	UUCGAGAUUGUUAACCAUUGU		siRNA21	ShortStack
ghr-b1.1r1-40875	Gossypium hirsutum (Upland Cotton) 1.1	A10:100594400-100595260	.	1,306	1.41	UACGAGAACUAGAGAGGCCUU		siRNA21	ShortStack
ghr-b1.1r1-40886	Gossypium hirsutum (Upland Cotton) 1.1	A10:100625711-100626742	.	3,029	3.27	UCUGGUUGAGAAGUUGAUGAG		siRNA21	ShortStack
ghr-b1.1r1-40892	Gossypium hirsutum (Upland Cotton) 1.1	A10:100701584-100701690	.	209	0.23	UGGAUGCUCAGAAAUGUUUUG		siRNA21	ShortStack
ghr-b1.1r1-40900	Gossypium hirsutum (Upland Cotton) 1.1	A10:100835792-100835910	+	1,879	2.03	UCUCCUGACAUAUCUCCGGCA		siRNA21	ShortStack
ghr-b1.1r1-40918	Gossypium hirsutum (Upland Cotton) 1.1	A11:191282-191881	.	26,868	29.02	UCCAAGUCUAGUAGAGAUGAU		siRNA21	ShortStack
ghr-b1.1r1-40933	Gossypium hirsutum (Upland Cotton) 1.1	A11:333095-333615	.	905	0.98	CCGGACUCGGCCGUUGCGCUA		siRNA21	ShortStack
ghr-b1.1r1-40946	Gossypium hirsutum (Upland Cotton) 1.1	A11:413301-413890	+	4,434	4.79	UGCGUGUUAGAGCUGAUCUUC		siRNA21	ShortStack
ghr-b1.1r1-41083	Gossypium hirsutum (Upland Cotton) 1.1	A11:1339183-1340092	-	7,278	7.86	UUAACUCUGAGCCAUGGAACC		siRNA21	ShortStack
ghr-b1.1r1-41431	Gossypium hirsutum (Upland Cotton) 1.1	A11:3367883-3367969	+	829	0.90	GCCGUUGAGGUGAGAGCGUUAU	miR1446	siRNA21	ShortStack
ghr-b1.1r1-41436	Gossypium hirsutum (Upland Cotton) 1.1	A11:3390978-3391327	.	1,061	1.15	UCUACUCAAGGGGACUACUGC		siRNA21	ShortStack
ghr-b1.1r1-41437	Gossypium hirsutum (Upland Cotton) 1.1	A11:3391534-3393802	.	34,348	37.10	CUUCGGACGAGAAGCAGAUGG		siRNA21	ShortStack
ghr-b1.1r1-41721	Gossypium hirsutum (Upland Cotton) 1.1	A11:5589318-5589850	.	8,485	9.17	UCUCCACAUUUAGGCUCGGCA		siRNA21	ShortStack
ghr-b1.1r1-41997	Gossypium hirsutum (Upland Cotton) 1.1	A11:7963297-7963549	-	853	0.92	UUUGAUUUAACAUACAGGGAC		siRNA21	ShortStack
ghr-b1.1r1-42034	Gossypium hirsutum (Upland Cotton) 1.1	A11:8237368-8237763	+	1,979	2.14	UAAUAUCAAGCAACUUCACAC		siRNA21	ShortStack
ghr-b1.1r1-42068	Gossypium hirsutum (Upland Cotton) 1.1	A11:8542160-8542354	+	1,122	1.21	GGGCUCUCUGAACUCCGAACC		siRNA21	ShortStack
ghr-b1.1r1-42163	Gossypium hirsutum (Upland Cotton) 1.1	A11:9511646-9511673	+	345	0.37	GAACGUUGUCUGGCCCGAGGA		siRNA21	ShortStack
ghr-b1.1r1-42222	Gossypium hirsutum (Upland Cotton) 1.1	A11:9961032-9961488	.	678	0.73	UAAGAACUCAUCAAACCCUGA		siRNA21	ShortStack
ghr-b1.1r1-42223	Gossypium hirsutum (Upland Cotton) 1.1	A11:9961593-9961805	.	1,124	1.21	UUUGGACCAUGAAUGAAGUAG		siRNA21	ShortStack
ghr-b1.1r1-42224	Gossypium hirsutum (Upland Cotton) 1.1	A11:9961917-9962137	.	1,123	1.21	UGCUCUGUAGAGUUUAACUGC		siRNA21	ShortStack
ghr-b1.1r1-42225	Gossypium hirsutum (Upland Cotton) 1.1	A11:9962246-9962448	.	1,874	2.02	CUUUGGAAUUCCGUUGUUUGU		siRNA21	ShortStack
ghr-b1.1r1-42226	Gossypium hirsutum (Upland Cotton) 1.1	A11:9962528-9963070	.	5,341	5.77	UUGUAGAACACCAAGGCCCGU		siRNA21	ShortStack
ghr-b1.1r1-42230	Gossypium hirsutum (Upland Cotton) 1.1	A11:9986088-9986553	-	872	0.94	CCAAGGAAACAGGAUUGGGCA		siRNA21	ShortStack
ghr-b1.1r1-42231	Gossypium hirsutum (Upland Cotton) 1.1	A11:9986660-9986718	.	262	0.28	UCUAAACCUGCAAAGACCUCU		siRNA21	ShortStack
ghr-b1.1r1-42232	Gossypium hirsutum (Upland Cotton) 1.1	A11:9986796-9986991	.	3,643	3.94	UCAGCAACUUAGGGGACUUAG		siRNA21	ShortStack
ghr-b1.1r1-42233	Gossypium hirsutum (Upland Cotton) 1.1	A11:9987088-9987256	-	4,167	4.50	CGAUGGCUCUGGCGAUUUCGG		siRNA21	ShortStack
ghr-b1.1r1-42234	Gossypium hirsutum (Upland Cotton) 1.1	A11:9987367-9987521	-	3,451	3.73	UUUCGUGCAUUGAAGAAGGUC		siRNA21	ShortStack
ghr-b1.1r1-42235	Gossypium hirsutum (Upland Cotton) 1.1	A11:9987653-9988144	.	17,047	18.41	CAAGGAUCAACAGGACAACCA		siRNA21	ShortStack
ghr-b1.1r1-42257	Gossypium hirsutum (Upland Cotton) 1.1	A11:10218961-10219184	-	23,508	25.39	AUGCACUGCCUCUUCCCUGGC	miR408	siRNA21	ShortStack
ghr-b1.1r1-42323	Gossypium hirsutum (Upland Cotton) 1.1	A11:11430492-11430708	.	2,097	2.27	UUAGUAGACAAAAACAGACGG		siRNA21	ShortStack
ghr-b1.1r1-42324	Gossypium hirsutum (Upland Cotton) 1.1	A11:11431272-11431368	.	1,504	1.63	UACCCUAAUCGUCGUGCUUCU		siRNA21	ShortStack
ghr-b1.1r1-42350	Gossypium hirsutum (Upland Cotton) 1.1	A11:11671210-11671473	.	274	0.30	UGCAGUCAACGUGGAAGGAAU		siRNA21	ShortStack
ghr-b1.1r1-42428	Gossypium hirsutum (Upland Cotton) 1.1	A11:12506145-12506699	+	2,457	2.65	UCUUCUGACCUAGCAGCUUAC		siRNA21	ShortStack
ghr-b1.1r1-42571	Gossypium hirsutum (Upland Cotton) 1.1	A11:14350076-14350164	-	578	0.62	UUCGGACCAGGCUUCAUUCCCCU	miR166	siRNA21	ShortStack
ghr-b1.1r1-42800	Gossypium hirsutum (Upland Cotton) 1.1	A11:16876430-16876835	.	593	0.64	UGGCUGAAAUGUGGACGGUUG		siRNA21	ShortStack
ghr-b1.1r1-42973	Gossypium hirsutum (Upland Cotton) 1.1	A11:18199135-18199200	+	760	0.82	CAAGGUGGAGAUUGUUGAUAA		siRNA21	ShortStack
ghr-b1.1r1-43114	Gossypium hirsutum (Upland Cotton) 1.1	A11:20155250-20156412	.	1,172	1.27	CUGGAGGGCUUAACAGGAUGG		siRNA21	ShortStack
ghr-b1.1r1-43115	Gossypium hirsutum (Upland Cotton) 1.1	A11:20156497-20156995	.	587	0.63	AUACAAAUCUGUAGACGUUGU		siRNA21	ShortStack
ghr-b1.1r1-43120	Gossypium hirsutum (Upland Cotton) 1.1	A11:20252726-20253452	.	920	0.99	CAAGAUCCGUAGAUGUGCUAU		siRNA21	ShortStack
ghr-b1.1r1-43146	Gossypium hirsutum (Upland Cotton) 1.1	A11:20482817-20483646	.	1,316	1.42	UGUUUGGACAGUGAGACAGGC		siRNA21	ShortStack
ghr-b1.1r1-43147	Gossypium hirsutum (Upland Cotton) 1.1	A11:20484215-20485139	.	4,047	4.37	CAGGAACUCCCAGAAUAGGAU		siRNA21	ShortStack
ghr-b1.1r1-43299	Gossypium hirsutum (Upland Cotton) 1.1	A11:22196629-22197434	.	938	1.01	UUGGCAGACUGGGGCAAUCUU		siRNA21	ShortStack
ghr-b1.1r1-43357	Gossypium hirsutum (Upland Cotton) 1.1	A11:22708914-22708973	-	578	0.62	GUCCUUGACGGGUUGCUCUAG		siRNA21	ShortStack
ghr-b1.1r1-43439	Gossypium hirsutum (Upland Cotton) 1.1	A11:23920216-23920306	.	309	0.33	CUUCUGUAUCUCUGAUUAAGUU		siRNA21	ShortStack
ghr-b1.1r1-43442	Gossypium hirsutum (Upland Cotton) 1.1	A11:23923455-23923706	.	698	0.75	UAGUCAGAGCGCUAUUCAUUU		siRNA21	ShortStack
ghr-b1.1r1-43606	Gossypium hirsutum (Upland Cotton) 1.1	A11:26228447-26228880	-	5,087	5.50	UUUCUUUAGAGUGUUAUUGUG		siRNA21	ShortStack
ghr-b1.1r1-43801	Gossypium hirsutum (Upland Cotton) 1.1	A11:36812720-36812941	-	9,504	10.27	AGCGAUCUCGUACUAAACGAA		siRNA21	ShortStack
ghr-b1.1r1-43985	Gossypium hirsutum (Upland Cotton) 1.1	A11:51681901-51681954	+	286	0.31	AAUAAGGGGCUUAGAAAGAUG	miR8701	siRNA21	ShortStack
ghr-b1.1r1-44214	Gossypium hirsutum (Upland Cotton) 1.1	A11:63676131-63676565	.	3,938	4.25	UAGACUGUAAGGUAGACUUCU		siRNA21	ShortStack
ghr-b1.1r1-44531	Gossypium hirsutum (Upland Cotton) 1.1	A11:73768009-73768178	.	552	0.60	UGGACAAGUGAAGAUCAACCA		siRNA21	ShortStack
ghr-b1.1r1-44654	Gossypium hirsutum (Upland Cotton) 1.1	A11:77350227-77350808	.	431	0.47	AAACGCACUGAAUCACGACUCAUU		siRNA21	ShortStack
ghr-b1.1r1-44697	Gossypium hirsutum (Upland Cotton) 1.1	A11:77754958-77755467	+	24,333	26.28	UGUGGUUGUAGUUAUCGGUGG		siRNA21	ShortStack
ghr-b1.1r1-44795	Gossypium hirsutum (Upland Cotton) 1.1	A11:79137644-79137819	.	417	0.45	CUUCGGAUCCAUGGAAAUCGU		siRNA21	ShortStack
ghr-b1.1r1-45424	Gossypium hirsutum (Upland Cotton) 1.1	A11:85117413-85117986	+	589	0.64	UGAAAGAUUGUCUGGGAAGAG		siRNA21	ShortStack
ghr-b1.1r1-45450	Gossypium hirsutum (Upland Cotton) 1.1	A11:85472611-85472766	-	3,371	3.64	CGGUCCCCGGCAACGGCGCCA	miR8175	siRNA21	ShortStack
ghr-b1.1r1-45458	Gossypium hirsutum (Upland Cotton) 1.1	A11:85581252-85581293	+	295	0.32	UCGAAUGACGGAUCACUUUUA		siRNA21	ShortStack
ghr-b1.1r1-45476	Gossypium hirsutum (Upland Cotton) 1.1	A11:85735403-85738297	.	24,787	26.78	AAGGAUGUGUAUAAUAGGUUA		siRNA21	ShortStack
ghr-b1.1r1-45482	Gossypium hirsutum (Upland Cotton) 1.1	A11:85833793-85835172	.	6,549	7.07	CAAGGCUACAGAAGAACAUAG		siRNA21	ShortStack
ghr-b1.1r1-45502	Gossypium hirsutum (Upland Cotton) 1.1	A11:86159600-86159641	+	951	1.03	UCAAGCGACUUAGGACGGACA		siRNA21	ShortStack
ghr-b1.1r1-45554	Gossypium hirsutum (Upland Cotton) 1.1	A11:86824352-86824566	.	322	0.35	AUGGUCUGGAAAAUCGGCUAC		siRNA21	ShortStack
ghr-b1.1r1-45555	Gossypium hirsutum (Upland Cotton) 1.1	A11:86824605-86824790	.	202	0.22	UAGCAGAUAAAGAUAUUCAGACA		siRNA21	ShortStack
ghr-b1.1r1-45711	Gossypium hirsutum (Upland Cotton) 1.1	A11:88174777-88175758	.	2,328	2.52	UAACAACAAGAGAUGAACAUU		siRNA21	ShortStack
ghr-b1.1r1-45738	Gossypium hirsutum (Upland Cotton) 1.1	A11:88453271-88453654	.	383	0.41	CGACAAGAGACGAACAUUUGC		siRNA21	ShortStack
ghr-b1.1r1-45741	Gossypium hirsutum (Upland Cotton) 1.1	A11:88502913-88503136	.	2,191	2.37	UAGCUCUGCAAAAAUUUCUGU		siRNA21	ShortStack
ghr-b1.1r1-45752	Gossypium hirsutum (Upland Cotton) 1.1	A11:88754873-88755922	.	2,193	2.37	AAACCUGAUCAAGACACCAGACUU		siRNA21	ShortStack
ghr-b1.1r1-45753	Gossypium hirsutum (Upland Cotton) 1.1	A11:88756089-88756298	.	581	0.63	UAAGAAGGCAUCGACACUCAA		siRNA21	ShortStack
ghr-b1.1r1-45754	Gossypium hirsutum (Upland Cotton) 1.1	A11:88757328-88758357	.	4,576	4.94	UUUGUACGGUAGAGAUGUAGC		siRNA21	ShortStack
ghr-b1.1r1-45804	Gossypium hirsutum (Upland Cotton) 1.1	A11:89027593-89028525	.	1,192	1.29	UUUCUGAUCAAAUUGUAAAUU		siRNA21	ShortStack
ghr-b1.1r1-45810	Gossypium hirsutum (Upland Cotton) 1.1	A11:89074808-89075758	.	4,502	4.86	AUGACGUGUAUAUCUCCACAA		siRNA21	ShortStack
ghr-b1.1r1-45811	Gossypium hirsutum (Upland Cotton) 1.1	A11:89076485-89076693	.	848	0.92	UACGGCUUUUAGAUUGGAAAGGAU		siRNA21	ShortStack
ghr-b1.1r1-45812	Gossypium hirsutum (Upland Cotton) 1.1	A11:89076824-89077737	.	1,744	1.88	AAGACACCAGACUUCACAACGGCA		siRNA21	ShortStack
ghr-b1.1r1-45898	Gossypium hirsutum (Upland Cotton) 1.1	A11:89912913-89913006	-	975	1.05	UGAACUUGGCAAAUGUAAAAG		siRNA21	ShortStack
ghr-b1.1r1-46033	Gossypium hirsutum (Upland Cotton) 1.1	A11:90785105-90787071	.	17,217	18.60	UCUGAUGACUUUGAUGCAAUU		siRNA21	ShortStack
ghr-b1.1r1-46072	Gossypium hirsutum (Upland Cotton) 1.1	A11:91111471-91111552	+	578	0.62	AUUGCUCGUCUGAAUAUCUUC		siRNA21	ShortStack
ghr-b1.1r1-46105	Gossypium hirsutum (Upland Cotton) 1.1	A11:91278578-91279168	.	2,782	3.01	UGAAGCUGCUAGCAUGAUCUU	miR167	siRNA21	ShortStack
ghr-b1.1r1-46111	Gossypium hirsutum (Upland Cotton) 1.1	A11:91334128-91334207	.	184	0.20	CGGAAGAUGAUGGUAGCUUAA		siRNA21	ShortStack
ghr-b1.1r1-46116	Gossypium hirsutum (Upland Cotton) 1.1	A11:91365673-91365805	.	108	0.12	UCAUUGUAACCACUCGUCUUC		siRNA21	ShortStack
ghr-b1.1r1-46127	Gossypium hirsutum (Upland Cotton) 1.1	A11:91400011-91401524	.	3,439	3.72	UGUGAUUACAGUAACUUGGAU		siRNA21	ShortStack
ghr-b1.1r1-46130	Gossypium hirsutum (Upland Cotton) 1.1	A11:91414261-91414428	.	161	0.17	CGGAAGAUGAUGGUAGCUUAA		siRNA21	ShortStack
ghr-b1.1r1-46131	Gossypium hirsutum (Upland Cotton) 1.1	A11:91414684-91415017	.	720	0.78	UGUGAUUACAGUAACUUGGAU		siRNA21	ShortStack
ghr-b1.1r1-46133	Gossypium hirsutum (Upland Cotton) 1.1	A11:91424799-91425644	.	1,702	1.84	CGGAAGAUGAUGGUAGCUUAA		siRNA21	ShortStack
ghr-b1.1r1-46224	Gossypium hirsutum (Upland Cotton) 1.1	A11:91882101-91882393	+	378	0.41	AUAGGGAAAACUACACUGGCA		siRNA21	ShortStack
ghr-b1.1r1-46228	Gossypium hirsutum (Upland Cotton) 1.1	A11:92073281-92073306	-	215	0.23	UUAGGGAAGACUGCUUUGGCC		siRNA21	ShortStack
ghr-b1.1r1-46230	Gossypium hirsutum (Upland Cotton) 1.1	A11:92138810-92139728	-	1,686	1.82	UAACUACUCGAUCUCUAACGG		siRNA21	ShortStack
ghr-b1.1r1-46249	Gossypium hirsutum (Upland Cotton) 1.1	A11:92268643-92268711	+	2,481	2.68	CAUGGCGUGGAUGUUUAGUUC		siRNA21	ShortStack
ghr-b1.1r1-46282	Gossypium hirsutum (Upland Cotton) 1.1	A11:92393966-92394304	+	12,653	13.67	CAGCUUGAGAGCGUGACAAUU		siRNA21	ShortStack
ghr-b1.1r1-46285	Gossypium hirsutum (Upland Cotton) 1.1	A11:92398725-92398981	+	20,904	22.58	UCGAUGAUAACUGGGUGAACU		siRNA21	ShortStack
ghr-b1.1r1-46295	Gossypium hirsutum (Upland Cotton) 1.1	A11:92487776-92487831	-	5,788	6.25	AAUGUCACUCUCUCAUGCUGU		siRNA21	ShortStack
ghr-b1.1r1-46303	Gossypium hirsutum (Upland Cotton) 1.1	A11:92544312-92544813	.	2,967	3.21	CACCUGAAAACCAACUUCCUU		siRNA21	ShortStack
ghr-b1.1r1-46324	Gossypium hirsutum (Upland Cotton) 1.1	A11:92649015-92650294	-	37,720	40.75	UGAACAUAAAACUGGGCCGCA		siRNA21	ShortStack
ghr-b1.1r1-46843	Gossypium hirsutum (Upland Cotton) 1.1	A12:3118911-3119054	.	6,976	7.54	UUUGCUUUCCCAGAACACAGUGCU		siRNA21	ShortStack
ghr-b1.1r1-46997	Gossypium hirsutum (Upland Cotton) 1.1	A12:4924624-4925170	.	838	0.91	GAUAACGAUCUGUAGACAACUC		siRNA21	ShortStack
ghr-b1.1r1-47379	Gossypium hirsutum (Upland Cotton) 1.1	A12:10652077-10652454	.	25,176	27.20	AAAGGCUCUGCCCGUUGCUCG		siRNA21	ShortStack
ghr-b1.1r1-47572	Gossypium hirsutum (Upland Cotton) 1.1	A12:14360621-14361490	.	1,017	1.10	UGUUGGAAAAGAGAUAGUCGA		siRNA21	ShortStack
ghr-b1.1r1-47654	Gossypium hirsutum (Upland Cotton) 1.1	A12:17137306-17137389	-	959	1.04	AUGAAAAUGGAAACUUGUUGG		siRNA21	ShortStack
ghr-b1.1r1-47655	Gossypium hirsutum (Upland Cotton) 1.1	A12:17276742-17276982	.	1,238	1.34	AUGAAAAUGGAAACUUGUUGG		siRNA21	ShortStack
ghr-b1.1r1-48051	Gossypium hirsutum (Upland Cotton) 1.1	A12:58521016-58521234	.	593	0.64	UGAAGGAAGCAGCACUCCCCA		siRNA21	ShortStack
ghr-b1.1r1-48064	Gossypium hirsutum (Upland Cotton) 1.1	A12:59209679-59209865	.	110	0.12	UGAAUGGAAGGACAUAUUGAU		siRNA21	ShortStack
ghr-b1.1r1-48065	Gossypium hirsutum (Upland Cotton) 1.1	A12:59209933-59210246	.	270	0.29	UCUGAGGAAUUUGAUUUGCUG		siRNA21	ShortStack
ghr-b1.1r1-48391	Gossypium hirsutum (Upland Cotton) 1.1	A12:62051999-62052346	+	21,288	23.00	GGAAUGUUGUCUGGACCGGGG	miR166	siRNA21	ShortStack
ghr-b1.1r1-48588	Gossypium hirsutum (Upland Cotton) 1.1	A12:64413603-64414701	.	124,797	134.80	UCUUGACCUUGUAAGACCCCU		siRNA21	ShortStack
TAS3-DW503626_Yin2012	Gossypium hirsutum (Upland Cotton) 1.1	A12:64413810-64414493	.	124,589	134.58	UCUUGACCUUGUAAGACCCCU		siRNA21	Yin_et_al_2012
ghr-b1.1r1-48600	Gossypium hirsutum (Upland Cotton) 1.1	A12:64474790-64474938	-	25,567	27.62	UUAGAUUCACGCACAAACUCG	miR403	siRNA21	ShortStack
ghr-b1.1r1-49181	Gossypium hirsutum (Upland Cotton) 1.1	A12:72074363-72074492	.	640	0.69	AAAAUUUGCGGCGUUUGUGGG		siRNA21	ShortStack
ghr-b1.1r1-49216	Gossypium hirsutum (Upland Cotton) 1.1	A12:72615523-72616236	.	679	0.73	UGGGGUUGGGCAUAUAGUUAG		siRNA21	ShortStack
ghr-b1.1r1-49232	Gossypium hirsutum (Upland Cotton) 1.1	A12:72836975-72837099	.	155	0.17	UUUUUCCAGACUAAAAGUAGG		siRNA21	ShortStack
ghr-b1.1r1-49555	Gossypium hirsutum (Upland Cotton) 1.1	A12:76501694-76502009	.	3,254	3.52	AGAAUCAUAAUCUGUAGCCGG		siRNA21	ShortStack
ghr-b1.1r1-49642	Gossypium hirsutum (Upland Cotton) 1.1	A12:77290851-77290878	-	85	0.09	UUUGAAGCCCCGAGAACUAUGUC		siRNA21	ShortStack
ghr-b1.1r1-49679	Gossypium hirsutum (Upland Cotton) 1.1	A12:77613715-77614389	.	977	1.06	AGGGGAACUUACUGCAGUCUCACG		siRNA21	ShortStack
ghr-b1.1r1-49858	Gossypium hirsutum (Upland Cotton) 1.1	A12:79070412-79071122	+	54,253	58.60	GGGAUGUUGGAAUGGCUCAAU	miR171	siRNA21	ShortStack
ghr-b1.1r1-50328	Gossypium hirsutum (Upland Cotton) 1.1	A12:83120692-83121651	.	2,175	2.35	UGCAGGGUAGAAUGUCGACGG		siRNA21	ShortStack
ghr-MIR399c-m1	Gossypium hirsutum (Upland Cotton) 1.1	A12:83444746-83444819	-	322	0.35	CAGGGCUUCUCUGCAUUGGCA		siRNA21	miRBase21-BestBlastHit
ghr-b1.1r1-50392	Gossypium hirsutum (Upland Cotton) 1.1	A12:83593986-83594163	-	7,099	7.67	ACCGAGAGAGUUGUGAUAGAG		siRNA21	ShortStack
ghr-b1.1r1-50393	Gossypium hirsutum (Upland Cotton) 1.1	A12:83594696-83594827	-	792	0.86	ACUCCGGGCUCGCUCUUUCGA		siRNA21	ShortStack
ghr-b1.1r1-50533	Gossypium hirsutum (Upland Cotton) 1.1	A12:84682610-84682773	.	1,868	2.02	UCUCAGAAGUAGUAUUUGAAG		siRNA21	ShortStack
ghr-b1.1r1-50635	Gossypium hirsutum (Upland Cotton) 1.1	A12:85289533-85289821	+	1,116	1.21	UAGAUCUAAUGUACAAGGACU		siRNA21	ShortStack
ghr-b1.1r1-50669	Gossypium hirsutum (Upland Cotton) 1.1	A12:85471100-85471166	.	395	0.43	CAAAUGGAUGAAAUUUUAGAC		siRNA21	ShortStack
ghr-b1.1r1-51205	Gossypium hirsutum (Upland Cotton) 1.1	A13:990616-990766	+	1,317	1.42	CAAGGUGGAGAUUGUUGAUAA		siRNA21	ShortStack
ghr-b1.1r1-51313	Gossypium hirsutum (Upland Cotton) 1.1	A13:1569713-1569806	-	643	0.70	UAUAGAACCCCUCCCCUUUGG		siRNA21	ShortStack
ghr-b1.1r1-51700	Gossypium hirsutum (Upland Cotton) 1.1	A13:3461526-3461752	.	616	0.67	CCAUCAAAGUCGUCGCCGGAA		siRNA21	ShortStack
ghr-b1.1r1-51701	Gossypium hirsutum (Upland Cotton) 1.1	A13:3462355-3462479	+	433	0.47	CGGCGACGGUUUUGAUGGCGAG		siRNA21	ShortStack
ghr-b1.1r1-52127	Gossypium hirsutum (Upland Cotton) 1.1	A13:6438709-6439313	.	3,230	3.49	UUCUUCUGGAGAGACUGCAUU		siRNA21	ShortStack
ghr-b1.1r1-52137	Gossypium hirsutum (Upland Cotton) 1.1	A13:8698732-8698764	+	222	0.24	CAGCGGGACGGACAGGGCAAG		siRNA21	ShortStack
ghr-b1.1r1-52166	Gossypium hirsutum (Upland Cotton) 1.1	A13:10417323-10417468	+	1,559	1.68	CUAAAAUUUAGCUACAUCUCU		siRNA21	ShortStack
ghr-b1.1r1-52431	Gossypium hirsutum (Upland Cotton) 1.1	A13:18129210-18129289	.	462	0.50	UCAGGAGAGACUGCAUUUCUU		siRNA21	ShortStack
ghr-b1.1r1-52441	Gossypium hirsutum (Upland Cotton) 1.1	A13:19446788-19446828	+	1,115	1.20	UUUGGUCAUCAUAUCUGCGGG		siRNA21	ShortStack
ghr-b1.1r1-52472	Gossypium hirsutum (Upland Cotton) 1.1	A13:20835916-20835941	+	1,927	2.08	CAGCCAAGGAUGAUUUGCCGG	miR169	siRNA21	ShortStack
ghr-b1.1r1-52559	Gossypium hirsutum (Upland Cotton) 1.1	A13:25426059-25426101	-	128	0.14	UCCAACACUCAUUGAAUUCGG		siRNA21	ShortStack
ghr-b1.1r1-52688	Gossypium hirsutum (Upland Cotton) 1.1	A13:39036120-39036260	-	8,116	8.77	AACGGCUUAGAACCAUCUCCU		siRNA21	ShortStack
ghr-b1.1r1-52700	Gossypium hirsutum (Upland Cotton) 1.1	A13:39172885-39175058	.	22,022	23.79	CAUUGAAGAUAUGGAUUUGUG		siRNA21	ShortStack
ghr-b1.1r1-52758	Gossypium hirsutum (Upland Cotton) 1.1	A13:40938794-40938896	.	315	0.34	UACAAUUUUAGAUCCUCGUUA		siRNA21	ShortStack
ghr-b1.1r1-52770	Gossypium hirsutum (Upland Cotton) 1.1	A13:42111143-42111228	-	10,884	11.76	UGAAGCUGCCAGCAUGAUCUA	miR167	siRNA21	ShortStack
ghr-b1.1r1-53024	Gossypium hirsutum (Upland Cotton) 1.1	A13:57689276-57689471	.	542	0.59	AAUGAAGAUCUUUAUACUGGA		siRNA21	ShortStack
ghr-b1.1r1-53325	Gossypium hirsutum (Upland Cotton) 1.1	A13:64452042-64452130	+	9,371	10.12	CGGUCCCCGGCAACGGCGCCA	miR8175	siRNA21	ShortStack
ghr-b1.1r1-53352	Gossypium hirsutum (Upland Cotton) 1.1	A13:64896491-64896719	-	4,520	4.88	UGACGUGGACAAAAUGCUCCC		siRNA21	ShortStack
ghr-b1.1r1-53779	Gossypium hirsutum (Upland Cotton) 1.1	A13:71015298-71015594	.	647	0.70	GAAGACGUGGAUUUAAAUCUC		siRNA21	ShortStack
ghr-b1.1r1-53780	Gossypium hirsutum (Upland Cotton) 1.1	A13:71015728-71016043	.	1,197	1.29	UAACUGUAUCAAGCAAGAGCU		siRNA21	ShortStack
ghr-b1.1r1-53862	Gossypium hirsutum (Upland Cotton) 1.1	A13:72043817-72044000	-	955	1.03	UUCUCUGAUUUAGUAGAACC		siRNA21	ShortStack
ghr-b1.1r1-53892	Gossypium hirsutum (Upland Cotton) 1.1	A13:72407581-72407731	.	775	0.84	UUACUGAAUGUAUACUUUUGC		siRNA21	ShortStack
ghr-b1.1r1-53894	Gossypium hirsutum (Upland Cotton) 1.1	A13:72436669-72437330	-	1,211,508	1,308.66	UCUCGGACCAGGCUUCAUUCC	miR166	siRNA21	ShortStack
ghr-b1.1r1-54063	Gossypium hirsutum (Upland Cotton) 1.1	A13:74279955-74280054	+	270	0.29	UUUCAAGAGUGUAGAAGACUU		siRNA21	ShortStack
ghr-b1.1r1-54193	Gossypium hirsutum (Upland Cotton) 1.1	A13:75026682-75026912	-	610	0.66	UCCAACACUCAUUGAAUUCGG		siRNA21	ShortStack
ghr-b1.1r1-54217	Gossypium hirsutum (Upland Cotton) 1.1	A13:75175584-75175684	-	261	0.28	UUUCAGCAGGGUUUAGACAUU		siRNA21	ShortStack
ghr-b1.1r1-54467	Gossypium hirsutum (Upland Cotton) 1.1	A13:76419247-76419992	.	2,455	2.65	UGACGUGUGGAAUGAAAAUCA		siRNA21	ShortStack
ghr-b1.1r1-54476	Gossypium hirsutum (Upland Cotton) 1.1	A13:76429625-76430340	.	1,626	1.76	CAGGACGAGCAAGAACUUCUU		siRNA21	ShortStack
ghr-b1.1r1-54480	Gossypium hirsutum (Upland Cotton) 1.1	A13:76437527-76438770	.	8,406	9.08	GAAAUUUGUUGAGAUCGACGG		siRNA21	ShortStack
ghr-b1.1r1-54491	Gossypium hirsutum (Upland Cotton) 1.1	A13:76462989-76464963	.	11,268	12.17	AGAAGUUCUUGAUCGUCCUGG		siRNA21	ShortStack
ghr-b1.1r1-54545	Gossypium hirsutum (Upland Cotton) 1.1	A13:76741746-76742015	+	8,849	9.56	UUCCACAGCUUUCUUGAACUU	miR396	siRNA21	ShortStack
ghr-b1.1r1-54679	Gossypium hirsutum (Upland Cotton) 1.1	A13:77802307-77802704	-	4,070	4.40	UGUUUAAAUGGACUGUGCUUGGC		siRNA21	ShortStack
ghr-b1.1r1-54680	Gossypium hirsutum (Upland Cotton) 1.1	A13:77804918-77805081	-	851	0.92	AUGGAUGGAUUUUUAAACAGA		siRNA21	ShortStack
ghr-b1.1r1-54799	Gossypium hirsutum (Upland Cotton) 1.1	A13:78450146-78450609	.	13,196	14.25	UUCGAUCUGAGCAGCUCUUGG		siRNA21	ShortStack
ghr-b1.1r1-54800	Gossypium hirsutum (Upland Cotton) 1.1	A13:78450703-78450888	.	3,408	3.68	UCGGUUUCGUCACGUUCGUGU		siRNA21	ShortStack
ghr-b1.1r1-54801	Gossypium hirsutum (Upland Cotton) 1.1	A13:78450972-78451361	.	1,298	1.40	CAUUUGAUCUUCAACUCGGUA		siRNA21	ShortStack
ghr-b1.1r1-54901	Gossypium hirsutum (Upland Cotton) 1.1	A13:78936318-78936541	.	214	0.23	UUUCCAAUGGUCUCAGGAUUG		siRNA21	ShortStack
ghr-b1.1r1-54934	Gossypium hirsutum (Upland Cotton) 1.1	A13:79049366-79050178	.	9,493	10.25	ACGACUCCGAGACACCUCUAG		siRNA21	ShortStack
ghr-b1.1r1-55066	Gossypium hirsutum (Upland Cotton) 1.1	A13:79675895-79676386	.	1,806	1.95	CGAAGCUGCGUUCUGCAACGC		siRNA21	ShortStack
ghr-b1.1r1-55104	Gossypium hirsutum (Upland Cotton) 1.1	A13:79933881-79934216	.	7,453	8.05	AAGAUAGAAAGAGGAACCUUG		siRNA21	ShortStack
ghr-b1.1r1-55106	Gossypium hirsutum (Upland Cotton) 1.1	A13:79960994-79961028	.	489	0.53	AGACCCUAGACCCUAGACCCU		siRNA21	ShortStack
ghr-b1.1r1-55110	Gossypium hirsutum (Upland Cotton) 1.1	D01:16035-16075	-	679	0.73	UUUGGGCUGAGGCUGUGACGU		siRNA21	ShortStack
ghr-b1.1r1-55745	Gossypium hirsutum (Upland Cotton) 1.1	D01:3487214-3487478	.	1,074	1.16	CUUUCGAUCUCACUUUGAUCC		siRNA21	ShortStack
ghr-b1.1r1-55751	Gossypium hirsutum (Upland Cotton) 1.1	D01:3515514-3515771	.	4,657	5.03	CAAAAGCAGAAAGAAUUGUGUG		siRNA21	ShortStack
ghr-b1.1r1-55763	Gossypium hirsutum (Upland Cotton) 1.1	D01:3590208-3591872	.	5,791	6.26	AUGAUGUGAUGAGAGAUAUGGCAU		siRNA21	ShortStack
ghr-b1.1r1-55924	Gossypium hirsutum (Upland Cotton) 1.1	D01:5008766-5009188	.	652	0.70	CUGAACUACCUCCUUGGAACC		siRNA21	ShortStack
ghr-b1.1r1-55943	Gossypium hirsutum (Upland Cotton) 1.1	D01:5117956-5118395	.	671	0.73	CGGGAGUGGACUGUCGUUUGG		siRNA21	ShortStack
ghr-b1.1r1-56122	Gossypium hirsutum (Upland Cotton) 1.1	D01:6565425-6565652	-	4,935	5.33	GUGGAUUAAAAUUUUGGUUGG		siRNA21	ShortStack
ghr-b1.1r1-56184	Gossypium hirsutum (Upland Cotton) 1.1	D01:7098354-7100393	.	10,396	11.23	AUGCAGUGAUUUGGUUGACGG		siRNA21	ShortStack
ghr-b1.1r1-56236	Gossypium hirsutum (Upland Cotton) 1.1	D01:8135511-8135873	.	468	0.51	CAAAACCGAUCGAAUUGAAGAAAU		siRNA21	ShortStack
ghr-b1.1r1-56368	Gossypium hirsutum (Upland Cotton) 1.1	D01:9392075-9392834	+	22,112	23.89	CAUAAGGGUGAAUUGAACUUA		siRNA21	ShortStack
ghr-b1.1r1-56401	Gossypium hirsutum (Upland Cotton) 1.1	D01:9714757-9714779	+	154	0.17	UCGAUAUUGUUCUCUUUGGGC		siRNA21	ShortStack
ghr-b1.1r1-56402	Gossypium hirsutum (Upland Cotton) 1.1	D01:9714878-9715048	+	1,373	1.48	CAAAGAGAACAAUACUGGUAU		siRNA21	ShortStack
ghr-b1.1r1-56692	Gossypium hirsutum (Upland Cotton) 1.1	D01:12982600-12982791	.	263	0.28	UUACAAGUCGGCUACCAAGCU		siRNA21	ShortStack
ghr-b1.1r1-56826	Gossypium hirsutum (Upland Cotton) 1.1	D01:14437508-14439018	+	112,045	121.03	UGCAAGGGAAGUUGUAGGCUGC		siRNA21	ShortStack
ghr-b1.1r1-56962	Gossypium hirsutum (Upland Cotton) 1.1	D01:15913592-15914220	.	441	0.48	CUGGCCGUUGUGACGACACCC		siRNA21	ShortStack
ghr-b1.1r1-56986	Gossypium hirsutum (Upland Cotton) 1.1	D01:16201405-16202447	.	2,029	2.19	UGAGCGCUAUCGAGCAUUGAGCAA		siRNA21	ShortStack
ghr-b1.1r1-57308	Gossypium hirsutum (Upland Cotton) 1.1	D01:22937558-22937838	-	14,259	15.40	CGAGGAUUAGUAGGAAGAAGA		siRNA21	ShortStack
ghr-b1.1r1-57309	Gossypium hirsutum (Upland Cotton) 1.1	D01:22937973-22938280	.	11,618	12.55	CAAUCACCUUCGGCGGAACAG		siRNA21	ShortStack
ghr-b1.1r1-57718	Gossypium hirsutum (Upland Cotton) 1.1	D01:40045678-40045731	+	523	0.57	AAAAUGCUUUCUCUGCGACGG		siRNA21	ShortStack
ghr-b1.1r1-57871	Gossypium hirsutum (Upland Cotton) 1.1	D01:44347021-44347180	-	2,749	2.97	UUAAGAUGGUAGAAACAGUUG		siRNA21	ShortStack
ghr-b1.1r1-57872	Gossypium hirsutum (Upland Cotton) 1.1	D01:44347438-44347720	+	4,819	5.21	CAGUGGAAGCUUGAAGAUGAU		siRNA21	ShortStack
ghr-b1.1r1-57878	Gossypium hirsutum (Upland Cotton) 1.1	D01:44872036-44872102	-	347	0.38	AUUGAUUUGACAAAGGCUUUGCA		siRNA21	ShortStack
ghr-b1.1r1-57879	Gossypium hirsutum (Upland Cotton) 1.1	D01:44873261-44873287	-	5,160	5.57	UUCGUUGUCUGUUCGACCUUG	miR858	siRNA21	ShortStack
ghr-b1.1r1-57972	Gossypium hirsutum (Upland Cotton) 1.1	D01:47042444-47043095	-	24,401	26.36	GUGGAACCUCACGCUUGAAGACC		siRNA21	ShortStack
ghr-b1.1r1-57983	Gossypium hirsutum (Upland Cotton) 1.1	D01:47325311-47325652	-	16,677	18.01	AUGAGCUAGAAGUUGGAACUC	miR8632	siRNA21	ShortStack
ghr-b1.1r1-58010	Gossypium hirsutum (Upland Cotton) 1.1	D01:47725812-47726130	+	5,180	5.60	CGAUUUGCUGACGUGGGAUGAA		siRNA21	ShortStack
ghr-b1.1r1-58011	Gossypium hirsutum (Upland Cotton) 1.1	D01:47726553-47727049	.	9,305	10.05	UCCUGACGCGUACCCUAACAU		siRNA21	ShortStack
ghr-b1.1r1-58194	Gossypium hirsutum (Upland Cotton) 1.1	D01:52405822-52405909	.	320	0.35	UAUGAGUGGCUGUUGGUGUAA		siRNA21	ShortStack
ghr-MIR394b-m2	Gossypium hirsutum (Upland Cotton) 1.1	D01:54017333-54017497	-	206	0.22	GGAGGCGGCCAGUAUGUCAAA	miR394	siRNA21	miRBase21-BestBlastHit
ghr-b1.1r1-59291	Gossypium hirsutum (Upland Cotton) 1.1	D01:60260728-60260810	.	553	0.60	UCGGAAAUGUUUCUGAUGUGU		siRNA21	ShortStack
ghr-b1.1r1-59292	Gossypium hirsutum (Upland Cotton) 1.1	D01:60262091-60262136	+	347	0.38	UUCGAGUACCAAGAAGGACGC		siRNA21	ShortStack
ghr-b1.1r1-59294	Gossypium hirsutum (Upland Cotton) 1.1	D01:60268994-60269376	+	1,539	1.66	AUUAGAUAGAAAGUUUUGGGC		siRNA21	ShortStack
ghr-b1.1r1-59692	Gossypium hirsutum (Upland Cotton) 1.1	D02:53492-53674	-	2,734	2.95	UGUUUCCCCAGAUUUCUCAAU		siRNA21	ShortStack
ghr-b1.1r1-59693	Gossypium hirsutum (Upland Cotton) 1.1	D02:53857-54024	-	4,924	5.32	AAGAUAGAAAGAGGAACCUUG		siRNA21	ShortStack
ghr-b1.1r1-59707	Gossypium hirsutum (Upland Cotton) 1.1	D02:144641-144749	-	2,332	2.52	CCGACCUUAGCUCAGUUGGUA	miR6478	siRNA21	ShortStack
ghr-b1.1r1-59721	Gossypium hirsutum (Upland Cotton) 1.1	D02:188166-188561	+	1,651	1.78	UAGCUGGACCCAGAAGUAUGC		siRNA21	ShortStack
ghr-b1.1r1-59852	Gossypium hirsutum (Upland Cotton) 1.1	D02:580879-581099	-	3,715	4.01	GGGGUCAUAGUAGGCAGGUUA		siRNA21	ShortStack
ghr-b1.1r1-59853	Gossypium hirsutum (Upland Cotton) 1.1	D02:581167-581373	.	4,610	4.98	AUGGACCUGCCUAACUUGCCU		siRNA21	ShortStack
ghr-b1.1r1-59874	Gossypium hirsutum (Upland Cotton) 1.1	D02:647062-647314	.	1,009	1.09	UGGAUGUGGAAAGGCGUUUUG		siRNA21	ShortStack
ghr-b1.1r1-59930	Gossypium hirsutum (Upland Cotton) 1.1	D02:986288-986789	.	2,126	2.30	AAAUGAUUCGGAACGGUUUUU		siRNA21	ShortStack
ghr-b1.1r1-59931	Gossypium hirsutum (Upland Cotton) 1.1	D02:986987-987149	.	292	0.32	UGAAACGGAAGUAACUAAUGA		siRNA21	ShortStack
ghr-b1.1r1-59939	Gossypium hirsutum (Upland Cotton) 1.1	D02:1001825-1001899	+	1,053	1.14	CUUGGUCCAAGACAUCAUCGA		siRNA21	ShortStack
ghr-b1.1r1-59940	Gossypium hirsutum (Upland Cotton) 1.1	D02:1001960-1002332	.	5,985	6.47	ACAUGAUUCGGAACGGUUUUU		siRNA21	ShortStack
ghr-b1.1r1-59941	Gossypium hirsutum (Upland Cotton) 1.1	D02:1002397-1002475	.	666	0.72	CAAUUUAAACGAUCGGAUUUC		siRNA21	ShortStack
ghr-b1.1r1-59942	Gossypium hirsutum (Upland Cotton) 1.1	D02:1002559-1002933	.	2,656	2.87	CGAGUAGAACUUGGUCCGGAG		siRNA21	ShortStack
ghr-b1.1r1-59946	Gossypium hirsutum (Upland Cotton) 1.1	D02:1006730-1007063	.	1,629	1.76	AUUUCCGUUCUUGGUAGCUCG		siRNA21	ShortStack
ghr-b1.1r1-59955	Gossypium hirsutum (Upland Cotton) 1.1	D02:1034520-1034850	.	331	0.36	AUUCCAAGAAGCUGUAGAUCA		siRNA21	ShortStack
ghr-b1.1r1-59976	Gossypium hirsutum (Upland Cotton) 1.1	D02:1237807-1238121	.	1,026	1.11	AGACUGCAUAUUGUUGCCUGA		siRNA21	ShortStack
ghr-b1.1r1-59979	Gossypium hirsutum (Upland Cotton) 1.1	D02:1275811-1276087	.	436	0.47	ACUUGGAUCUUGUGAAAAUGG		siRNA21	ShortStack
ghr-b1.1r1-59984	Gossypium hirsutum (Upland Cotton) 1.1	D02:1289665-1290548	.	2,066	2.23	UCAAACAUUGAGCUUCUUUCA		siRNA21	ShortStack
ghr-b1.1r1-59992	Gossypium hirsutum (Upland Cotton) 1.1	D02:1309573-1310292	.	1,938	2.09	UCAUGGAAAGACUGCAUUUUG		siRNA21	ShortStack
ghr-b1.1r1-59993	Gossypium hirsutum (Upland Cotton) 1.1	D02:1310563-1311134	.	894	0.97	UCCAUGACCGAAGAUGAUGCA		siRNA21	ShortStack
ghr-b1.1r1-60086	Gossypium hirsutum (Upland Cotton) 1.1	D02:1896662-1896768	.	301	0.33	UAGCUCUGCAAAAAUUUCUGC		siRNA21	ShortStack
ghr-b1.1r1-60087	Gossypium hirsutum (Upland Cotton) 1.1	D02:1901440-1901490	.	367	0.40	UAGCUCUGCAAAAAUUUCUGC		siRNA21	ShortStack
ghr-b1.1r1-60158	Gossypium hirsutum (Upland Cotton) 1.1	D02:2309481-2310198	.	2,423	2.62	UGACCCUGGAUUUGCUGAAAG		siRNA21	ShortStack
ghr-b1.1r1-60173	Gossypium hirsutum (Upland Cotton) 1.1	D02:2401060-2401507	.	1,102	1.19	UGUGAAGAAAGUCGAGAUACA		siRNA21	ShortStack
ghr-b1.1r1-60203	Gossypium hirsutum (Upland Cotton) 1.1	D02:2775916-2775962	.	378	0.41	CUGGCUGAGUCAUAUAGAUCUC		siRNA21	ShortStack
ghr-b1.1r1-60230	Gossypium hirsutum (Upland Cotton) 1.1	D02:2890945-2892478	.	2,196	2.37	CGAAGGGGAUUUGAACGACGG		siRNA21	ShortStack
ghr-b1.1r1-60278	Gossypium hirsutum (Upland Cotton) 1.1	D02:3162391-3162497	-	6,615	7.15	CCGACCUUAGCUCAGUUGGUA	miR6478	siRNA21	ShortStack
ghr-b1.1r1-60285	Gossypium hirsutum (Upland Cotton) 1.1	D02:3175110-3175451	+	797	0.86	UCAUGGAAAGACUGCAUUUUG		siRNA21	ShortStack
ghr-b1.1r1-60323	Gossypium hirsutum (Upland Cotton) 1.1	D02:3954192-3954413	.	779	0.84	UCUGAAUGGAAUGACGAUGAU		siRNA21	ShortStack
ghr-b1.1r1-60629	Gossypium hirsutum (Upland Cotton) 1.1	D02:5161587-5162210	.	813	0.88	UGGACACAAGAGACUUCACAA		siRNA21	ShortStack
ghr-b1.1r1-60809	Gossypium hirsutum (Upland Cotton) 1.1	D02:6023429-6023837	-	7,330	7.92	UGGAAGAAACAAGUAGGGAAC		siRNA21	ShortStack
ghr-b1.1r1-60891	Gossypium hirsutum (Upland Cotton) 1.1	D02:6492422-6492799	-	53,015	57.27	UUCCACUCUUGCUUAACCCUG		siRNA21	ShortStack
ghr-b1.1r1-60892	Gossypium hirsutum (Upland Cotton) 1.1	D02:6492994-6493290	-	22,594	24.41	GGGCCAAGCAAAAGUGGAACC		siRNA21	ShortStack
ghr-b1.1r1-61183	Gossypium hirsutum (Upland Cotton) 1.1	D02:8361059-8361169	+	1,338	1.45	CUUCAUGGAAAGUCGGAAGUAA		siRNA21	ShortStack
ghr-b1.1r1-61239	Gossypium hirsutum (Upland Cotton) 1.1	D02:8937187-8937210	.	212	0.23	AUACCGUAGAAUCCAUUUCAU		siRNA21	ShortStack
ghr-b1.1r1-61419	Gossypium hirsutum (Upland Cotton) 1.1	D02:10288343-10288547	.	246	0.27	AUCUCCUCGAUCUGAUCUGAAACU		siRNA21	ShortStack
ghr-b1.1r1-61638	Gossypium hirsutum (Upland Cotton) 1.1	D02:13243957-13244401	.	1,163	1.26	GUAGACUGCGACAAUGAAGAGGCU		siRNA21	ShortStack
ghr-b1.1r1-61834	Gossypium hirsutum (Upland Cotton) 1.1	D02:17260682-17261618	.	543	0.59	UUUGAAUGGGCAAAGCGAGCU		siRNA21	ShortStack
ghr-b1.1r1-61879	Gossypium hirsutum (Upland Cotton) 1.1	D02:18993051-18993075	.	230	0.25	UACAAAAAGAGGAUUCGAGAG		siRNA21	ShortStack
ghr-b1.1r1-62340	Gossypium hirsutum (Upland Cotton) 1.1	D02:36373469-36373496	.	67	0.07	UAGGGAACAUUUCGCCGGACA		siRNA21	ShortStack
ghr-b1.1r1-62341	Gossypium hirsutum (Upland Cotton) 1.1	D02:36373580-36373855	.	216	0.23	ACAAUCAGAUCACUGGAGCUA		siRNA21	ShortStack
ghr-b1.1r1-62468	Gossypium hirsutum (Upland Cotton) 1.1	D02:39655333-39655355	-	1,166	1.26	AUCAGAGUUGCGCAGCGGAAG		siRNA21	ShortStack
ghr-b1.1r1-62477	Gossypium hirsutum (Upland Cotton) 1.1	D02:39870358-39870801	.	2,200	2.38	CUGGAAAAACUCUCUGUUCCC		siRNA21	ShortStack
ghr-b1.1r1-62478	Gossypium hirsutum (Upland Cotton) 1.1	D02:39870942-39871278	.	724	0.78	CAGAUGAUGUAGCAGCGAUGG		siRNA21	ShortStack
ghr-b1.1r1-62517	Gossypium hirsutum (Upland Cotton) 1.1	D02:41656247-41656341	-	3,826	4.13	CAGUCGCAGAACUCCGUACCU		siRNA21	ShortStack
ghr-b1.1r1-62694	Gossypium hirsutum (Upland Cotton) 1.1	D02:45273902-45273933	+	859	0.93	UUUGUACGUGGCGGGAGAUAU	miR8783	siRNA21	ShortStack
ghr-b1.1r1-63503	Gossypium hirsutum (Upland Cotton) 1.1	D02:59821315-59821617	.	575	0.62	CGCAUCCGUACUGUAGAGGCA		siRNA21	ShortStack
ghr-b1.1r1-64008	Gossypium hirsutum (Upland Cotton) 1.1	D02:63902028-63902066	-	1,066	1.15	AUUGGAUUUACGGAUACGUCA		siRNA21	ShortStack
ghr-b1.1r1-64182	Gossypium hirsutum (Upland Cotton) 1.1	D02:64790889-64791889	.	4,010	4.33	UGAACCCUGGAUGGACGGUGC		siRNA21	ShortStack
ghr-b1.1r1-64241	Gossypium hirsutum (Upland Cotton) 1.1	D02:64963428-64963735	.	1,243	1.34	UCGAUGGAAUCAGGAGACAAA	miR8726	siRNA21	ShortStack
ghr-b1.1r1-64748	Gossypium hirsutum (Upland Cotton) 1.1	D02:66821709-66822030	+	11,948,420	12,906.56	UCGGACCAGGCUUCAUUCCCC	miR166	siRNA21	ShortStack
ghr-b1.1r1-64767	Gossypium hirsutum (Upland Cotton) 1.1	D02:66902378-66902506	.	2,215	2.39	ACGAGCUGGUUUCUGAAUUUC		siRNA21	ShortStack
ghr-b1.1r1-64822	Gossypium hirsutum (Upland Cotton) 1.1	D03:5661-5853	+	1,407	1.52	UACAUAGAUGAUGUUGGACUA		siRNA21	ShortStack
ghr-b1.1r1-65082	Gossypium hirsutum (Upland Cotton) 1.1	D03:1056473-1056666	-	3,284	3.55	CUUGGUACUCGAAAUUGCUGC		siRNA21	ShortStack
ghr-b1.1r1-65083	Gossypium hirsutum (Upland Cotton) 1.1	D03:1056889-1056949	.	1,140	1.23	UUCAGGAAUGGAUCGCUUUUA		siRNA21	ShortStack
ghr-b1.1r1-65211	Gossypium hirsutum (Upland Cotton) 1.1	D03:1686565-1687998	.	129,412	139.79	CGAAGAUACUGAUGAAGACGU		siRNA21	ShortStack
ghr-b1.1r1-65212	Gossypium hirsutum (Upland Cotton) 1.1	D03:1699295-1699487	.	776	0.84	CUACCAAAGGAAAUAUGGACA		siRNA21	ShortStack
ghr-b1.1r1-65573	Gossypium hirsutum (Upland Cotton) 1.1	D03:3468122-3468163	-	833	0.90	UCUGAUAAUUGGAAUUCGGAG		siRNA21	ShortStack
ghr-b1.1r1-65617	Gossypium hirsutum (Upland Cotton) 1.1	D03:3638902-3639165	+	1,396	1.51	AAGAUCUCUCUAACAAUUAUG		siRNA21	ShortStack
ghr-b1.1r1-65618	Gossypium hirsutum (Upland Cotton) 1.1	D03:3639606-3639801	+	5,611	6.06	GAGGAAGUGGGAGAAGAUUUA		siRNA21	ShortStack
ghr-b1.1r1-65631	Gossypium hirsutum (Upland Cotton) 1.1	D03:3695786-3696191	+	1,461	1.58	UAGUUGCGAUCAUUUGGCUUC		siRNA21	ShortStack
ghr-b1.1r1-65842	Gossypium hirsutum (Upland Cotton) 1.1	D03:5555658-5555913	.	2,259	2.44	UUUUAGAUUUGGGCUGCCAUG		siRNA21	ShortStack
ghr-b1.1r1-65858	Gossypium hirsutum (Upland Cotton) 1.1	D03:5698142-5698260	+	1,686	1.82	UGGGGGGCGUGUGAACGGUGC		siRNA21	ShortStack
ghr-b1.1r1-65997	Gossypium hirsutum (Upland Cotton) 1.1	D03:7007924-7008587	.	1,765	1.91	GAUCUGGAAUUUUGCUCAAUGCUC		siRNA21	ShortStack
ghr-b1.1r1-66323	Gossypium hirsutum (Upland Cotton) 1.1	D03:16359151-16359205	.	513	0.55	UCGCGGAUCUGUAUCAGAAAC		siRNA21	ShortStack
ghr-b1.1r1-66324	Gossypium hirsutum (Upland Cotton) 1.1	D03:16359281-16359502	.	7,494	8.10	CGACGAUCAGCUGUAUGAUGC		siRNA21	ShortStack
ghr-b1.1r1-66616	Gossypium hirsutum (Upland Cotton) 1.1	D03:28996108-28996234	+	1,538	1.66	UAGCCAAGGAUGACUUGCCUG	miR169	siRNA21	ShortStack
ghr-b1.1r1-66693	Gossypium hirsutum (Upland Cotton) 1.1	D03:30110456-30110901	.	2,031	2.19	CUCUUCGCGGAUCCGUACUAG		siRNA21	ShortStack
ghr-b1.1r1-66928	Gossypium hirsutum (Upland Cotton) 1.1	D03:33733833-33734104	.	1,012	1.09	UUGUGUCAGAUUUAAAAAAUU		siRNA21	ShortStack
ghr-b1.1r1-67507	Gossypium hirsutum (Upland Cotton) 1.1	D03:39606825-39607537	.	3,926	4.24	UUAGGUACAUAAGAAAGUCGG		siRNA21	ShortStack
ghr-b1.1r1-67641	Gossypium hirsutum (Upland Cotton) 1.1	D03:40826151-40826178	-	21,086	22.78	AGAAUCUUGAUGAUGCUGCAU	miR172	siRNA21	ShortStack
ghr-b1.1r1-67727	Gossypium hirsutum (Upland Cotton) 1.1	D03:41356255-41356275	-	248	0.27	AGAAUCUUGAUGAUGCUGCAC	miR172	siRNA21	ShortStack
ghr-b1.1r1-67982	Gossypium hirsutum (Upland Cotton) 1.1	D03:42508100-42508163	-	1,216	1.31	CUGUGAACUUGUUUGGACUCU		siRNA21	ShortStack
ghr-b1.1r1-68180	Gossypium hirsutum (Upland Cotton) 1.1	D03:43452522-43452608	+	9,629	10.40	GUCUGGGUGGUGUAGUUGGUU		siRNA21	ShortStack
ghr-b1.1r1-68319	Gossypium hirsutum (Upland Cotton) 1.1	D03:43885730-43886024	.	559	0.60	UUAAUAAUUUUUGUUCGUUGAU		siRNA21	ShortStack
ghr-b1.1r1-68351	Gossypium hirsutum (Upland Cotton) 1.1	D03:43979439-43979479	.	563	0.61	CAAUAAUAAUGCCUUGUCUUC		siRNA21	ShortStack
ghr-b1.1r1-68449	Gossypium hirsutum (Upland Cotton) 1.1	D03:44465652-44466333	.	2,086	2.25	UGAAGCAACUGUGGAUGGCUG		siRNA21	ShortStack
ghr-b1.1r1-68450	Gossypium hirsutum (Upland Cotton) 1.1	D03:44467347-44467845	.	447	0.48	UGAUAGUGGGAGUAGUGGUUA		siRNA21	ShortStack
ghr-b1.1r1-68453	Gossypium hirsutum (Upland Cotton) 1.1	D03:44480765-44481007	.	554	0.60	UUCUUUGAGACAAGUGGAGGU		siRNA21	ShortStack
ghr-b1.1r1-68454	Gossypium hirsutum (Upland Cotton) 1.1	D03:44481962-44482220	.	497	0.54	CUUUGAGACAAGUGGAGGUAG		siRNA21	ShortStack
ghr-b1.1r1-68455	Gossypium hirsutum (Upland Cotton) 1.1	D03:44482380-44482425	.	145	0.16	UUCUUUGAGACAAGUGGAGGU		siRNA21	ShortStack
ghr-b1.1r1-68577	Gossypium hirsutum (Upland Cotton) 1.1	D03:45149006-45149218	.	176	0.19	CACGACUACAAUUCUAGAUGG		siRNA21	ShortStack
ghr-b1.1r1-68578	Gossypium hirsutum (Upland Cotton) 1.1	D03:45149353-45149868	.	332	0.36	UUAUAACUAGUAGAAACCGAU		siRNA21	ShortStack
ghr-b1.1r1-68593	Gossypium hirsutum (Upland Cotton) 1.1	D03:45559229-45559250	-	425	0.46	UCAACAAAUACCAGUUUGAGC	miR3476	siRNA21	ShortStack
ghr-b1.1r1-68605	Gossypium hirsutum (Upland Cotton) 1.1	D03:45660782-45660807	-	451	0.49	UCAACAAAUACCAGUUUGAGC	miR3476	siRNA21	ShortStack
ghr-b1.1r1-68615	Gossypium hirsutum (Upland Cotton) 1.1	D03:45688016-45688041	-	12,386	13.38	UGAACUGGGUUUGUUGGCUGU	miR3476	siRNA21	ShortStack
ghr-b1.1r1-68722	Gossypium hirsutum (Upland Cotton) 1.1	D03:46210940-46211374	-	15,901	17.18	CUUGCAGGUCGUAUCUCUGUC		siRNA21	ShortStack
ghr-b1.1r1-69106	Gossypium hirsutum (Upland Cotton) 1.1	D04:1260116-1260427	.	773	0.84	UUUGAGUGGAUGAACAGAUGA		siRNA21	ShortStack
ghr-b1.1r1-69342	Gossypium hirsutum (Upland Cotton) 1.1	D04:2645278-2647756	-	245,539	265.23	UCGGCAAAUUGUGGAUGGUUU		siRNA21	ShortStack
ghr-b1.1r1-69612	Gossypium hirsutum (Upland Cotton) 1.1	D04:4244823-4245409	.	803	0.87	CUGGAUCAAGGACUUAACCCU		siRNA21	ShortStack
ghr-b1.1r1-69649	Gossypium hirsutum (Upland Cotton) 1.1	D04:4419398-4419428	+	337	0.36	UUGGCAUUCUUGGAAGUAUCA		siRNA21	ShortStack
ghr-b1.1r1-70186	Gossypium hirsutum (Upland Cotton) 1.1	D04:8986387-8987162	.	2,547	2.75	AUACGCAAGAGAUUGAGCGACUGG		siRNA21	ShortStack
ghr-b1.1r1-70542	Gossypium hirsutum (Upland Cotton) 1.1	D04:13724422-13724643	.	598	0.65	GCCGAUAAGACAUCACAACUU		siRNA21	ShortStack
ghr-b1.1r1-70572	Gossypium hirsutum (Upland Cotton) 1.1	D04:14102370-14102533	-	1,154	1.25	UAUUGGCUGCAAUAAGACGUG		siRNA21	ShortStack
ghr-b1.1r1-70608	Gossypium hirsutum (Upland Cotton) 1.1	D04:14871260-14872627	.	26,108	28.20	CCAAGGACUGUAGUAGUGACU		siRNA21	ShortStack
ghr-b1.1r1-70732	Gossypium hirsutum (Upland Cotton) 1.1	D04:19478072-19478693	.	35,205	38.03	UGAGAGGAUUGAUCAAGAUAA		siRNA21	ShortStack
ghr-b1.1r1-70924	Gossypium hirsutum (Upland Cotton) 1.1	D04:27377206-27377323	-	1,191	1.29	CAAGCAGUAGCAAUUCACUUU		siRNA21	ShortStack
ghr-b1.1r1-70977	Gossypium hirsutum (Upland Cotton) 1.1	D04:28888295-28888515	+	531	0.57	CUUGUCGGAAGCCAUGACGGU		siRNA21	ShortStack
ghr-b1.1r1-70981	Gossypium hirsutum (Upland Cotton) 1.1	D04:29116480-29116542	-	672	0.73	GAAAGUUUUGGGCUGAGGCUG		siRNA21	ShortStack
ghr-b1.1r1-70983	Gossypium hirsutum (Upland Cotton) 1.1	D04:29117607-29117854	.	49,449	53.41	UUGGUAACAAGAGAUCGUCAG		siRNA21	ShortStack
ghr-b1.1r1-71081	Gossypium hirsutum (Upland Cotton) 1.1	D04:31529327-31529613	-	535	0.58	AUGGAUAAAGAUAUAAAAGUGU		siRNA21	ShortStack
ghr-b1.1r1-71195	Gossypium hirsutum (Upland Cotton) 1.1	D04:34392779-34393045	.	558	0.60	UAAAGAAUCUGUCGGAUGCCU		siRNA21	ShortStack
ghr-b1.1r1-71244	Gossypium hirsutum (Upland Cotton) 1.1	D04:35110940-35111036	+	2,297	2.48	AGAAUCUUGAUGAUGCUGCAU	miR172	siRNA21	ShortStack
ghr-b1.1r1-71461	Gossypium hirsutum (Upland Cotton) 1.1	D04:39389751-39390265	.	1,574	1.70	AUCGACUGUAGCUUCCGAAUCGGC		siRNA21	ShortStack
ghr-b1.1r1-71462	Gossypium hirsutum (Upland Cotton) 1.1	D04:39391106-39391462	.	2,416	2.61	CGAUAAUUGGAAGUCAGAGCA		siRNA21	ShortStack
ghr-b1.1r1-71545	Gossypium hirsutum (Upland Cotton) 1.1	D04:40832496-40832953	.	945	1.02	UACCCCUGAUCGAUGGAUUAA		siRNA21	ShortStack
ghr-b1.1r1-71546	Gossypium hirsutum (Upland Cotton) 1.1	D04:40833219-40833831	.	1,178	1.27	UGUAUGACUGCAGAAGAAUCA		siRNA21	ShortStack
ghr-b1.1r1-71556	Gossypium hirsutum (Upland Cotton) 1.1	D04:41102482-41102744	+	435	0.47	GGUAGAGCAGUUUAUGAAUGU		siRNA21	ShortStack
ghr-b1.1r1-71628	Gossypium hirsutum (Upland Cotton) 1.1	D04:41921277-41921407	+	578	0.62	UAUUUUAUUUAGUGUUGGGCA		siRNA21	ShortStack
ghr-b1.1r1-72357	Gossypium hirsutum (Upland Cotton) 1.1	D04:47659103-47659623	.	502	0.54	UACCUCAAAGGACUGGGCGUC		siRNA21	ShortStack
ghr-b1.1r1-72801	Gossypium hirsutum (Upland Cotton) 1.1	D04:49592706-49593386	.	6,143	6.64	CACUGUAGCGUGAGACAAAAAGU	miR5207	siRNA21	ShortStack
ghr-b1.1r1-72837	Gossypium hirsutum (Upland Cotton) 1.1	D04:49876208-49876300	+	122	0.13	UCAGAUCCAACUCCAAUACCC		siRNA21	ShortStack
ghr-b1.1r1-72943	Gossypium hirsutum (Upland Cotton) 1.1	D04:50358789-50358891	-	309	0.33	UAGUCCCUGAACUUUAUGAUU		siRNA21	ShortStack
ghr-b1.1r1-72989	Gossypium hirsutum (Upland Cotton) 1.1	D04:50559944-50560074	+	19,879	21.47	UUGACAGAAGAGAGAGAGCAC	miR156	siRNA21	ShortStack
ghr-b1.1r1-73055	Gossypium hirsutum (Upland Cotton) 1.1	D04:51043482-51043760	-	4,799	5.18	ACUUCUAGUCCCUGAACUUGA		siRNA21	ShortStack
ghr-b1.1r1-73065	Gossypium hirsutum (Upland Cotton) 1.1	D04:51079446-51079717	.	314	0.34	AGCGAGUCAUAGUGUAGAGGAUG		siRNA21	ShortStack
ghr-b1.1r1-73067	Gossypium hirsutum (Upland Cotton) 1.1	D04:51081539-51082754	.	2,598	2.81	CAAGGAACUCACAGACGAUGA		siRNA21	ShortStack
ghr-b1.1r1-73519	Gossypium hirsutum (Upland Cotton) 1.1	D05:2693653-2694686	.	932	1.01	CGAUCCAUGGAUGUGUGUAGC		siRNA21	ShortStack
ghr-b1.1r1-73631	Gossypium hirsutum (Upland Cotton) 1.1	D05:3264018-3264330	.	1,883	2.03	CAAGAACCGGUGCUUGAGAAU		siRNA21	ShortStack
ghr-b1.1r1-73632	Gossypium hirsutum (Upland Cotton) 1.1	D05:3265801-3266236	.	2,513	2.72	UCCAGAUGAACUAUUCGGCUU		siRNA21	ShortStack
ghr-b1.1r1-73877	Gossypium hirsutum (Upland Cotton) 1.1	D05:4980972-4980995	-	488	0.53	UGGACCAACGGCGUUAAGGUC		siRNA21	ShortStack
ghr-b1.1r1-74143	Gossypium hirsutum (Upland Cotton) 1.1	D05:6861689-6861976	.	513	0.55	UGUAACGAUGGACUCAUCUCC		siRNA21	ShortStack
ghr-b1.1r1-74145	Gossypium hirsutum (Upland Cotton) 1.1	D05:6865400-6865667	-	321	0.35	UAGGCUCUGUUGAAGAAGGCU		siRNA21	ShortStack
ghr-b1.1r1-74361	Gossypium hirsutum (Upland Cotton) 1.1	D05:8476011-8476031	.	222	0.24	UUACCAACCCCUCCCAUUUUU		siRNA21	ShortStack
ghr-b1.1r1-74364	Gossypium hirsutum (Upland Cotton) 1.1	D05:8510824-8511975	.	18,865	20.38	GAUAGUUCGGAACAUAGGCCG		siRNA21	ShortStack
ghr-b1.1r1-74365	Gossypium hirsutum (Upland Cotton) 1.1	D05:8512200-8512403	.	426	0.46	CUAUUAUCAGAAGGCUGGUUU		siRNA21	ShortStack
ghr-b1.1r1-74366	Gossypium hirsutum (Upland Cotton) 1.1	D05:8519027-8519099	+	210	0.23	UGCAUUUGCACCUGCACCUUC	miR530	siRNA21	ShortStack
ghr-b1.1r1-74511	Gossypium hirsutum (Upland Cotton) 1.1	D05:9541133-9541170	.	195	0.21	UAGCUCUGCAAAAAUUUCUGC		siRNA21	ShortStack
ghr-b1.1r1-74833	Gossypium hirsutum (Upland Cotton) 1.1	D05:11860679-11861590	.	90,383	97.63	AAGGAGAAACACAGUGGAGCA		siRNA21	ShortStack
ghr-b1.1r1-74882	Gossypium hirsutum (Upland Cotton) 1.1	D05:12328727-12328831	+	10,508	11.35	UCAGAUCAUCUUGCAGCUUCA	miR167	siRNA21	ShortStack
ghr-b1.1r1-75373	Gossypium hirsutum (Upland Cotton) 1.1	D05:15967256-15967293	.	138	0.15	AUACAGAACGAGAAUACAUGU		siRNA21	ShortStack
ghr-b1.1r1-75466	Gossypium hirsutum (Upland Cotton) 1.1	D05:16695790-16695815	.	353	0.38	UGAAUAGCGCUUUGACUGUCA		siRNA21	ShortStack
ghr-b1.1r1-75546	Gossypium hirsutum (Upland Cotton) 1.1	D05:17521965-17523460	-	15,522	16.77	UAAACCUUGAACCCUGAAGACUAU		siRNA21	ShortStack
ghr-b1.1r1-75654	Gossypium hirsutum (Upland Cotton) 1.1	D05:18350950-18351053	-	482	0.52	AUAUGAUCGGGUUUAAUCUCC		siRNA21	ShortStack
ghr-b1.1r1-75675	Gossypium hirsutum (Upland Cotton) 1.1	D05:18431219-18431737	.	459	0.50	CGGAGAGAAUAAGGAUGACAU		siRNA21	ShortStack
ghr-b1.1r1-75791	Gossypium hirsutum (Upland Cotton) 1.1	D05:19254390-19255967	.	1,233	1.33	UCAUAAUCUUGCAGAAACUCG		siRNA21	ShortStack
ghr-b1.1r1-76006	Gossypium hirsutum (Upland Cotton) 1.1	D05:20679355-20679530	.	515	0.56	UUUCUGUUAAUCAUCUGUCUUU		siRNA21	ShortStack
ghr-b1.1r1-76295	Gossypium hirsutum (Upland Cotton) 1.1	D05:22487931-22488602	.	675	0.73	CAGUGGAUUACUUUGCGGCUG		siRNA21	ShortStack
ghr-b1.1r1-76537	Gossypium hirsutum (Upland Cotton) 1.1	D05:24424872-24424952	.	913	0.99	AAAGUUUUGGGCUGAGGCUGU		siRNA21	ShortStack
ghr-b1.1r1-76538	Gossypium hirsutum (Upland Cotton) 1.1	D05:24425455-24425538	.	7,657	8.27	UCUUGGUACUCGAAAUUGCUG		siRNA21	ShortStack
ghr-b1.1r1-76539	Gossypium hirsutum (Upland Cotton) 1.1	D05:24425626-24425853	.	2,206	2.38	UCAAUUAAACUGAAGAGUCAU		siRNA21	ShortStack
ghr-b1.1r1-76736	Gossypium hirsutum (Upland Cotton) 1.1	D05:25619007-25619119	-	940	1.02	UGCUACUUGUAGUUAUGCAUG	miR7512	siRNA21	ShortStack
ghr-MIR7512-m1	Gossypium hirsutum (Upland Cotton) 1.1	D05:25619077-25619414	-	1,026	1.11	UGCUACUUGUAGUUAUGCAUG	miR7512	siRNA21	miRBase21-BestBlastHit
ghr-b1.1r1-76911	Gossypium hirsutum (Upland Cotton) 1.1	D05:26490747-26490769	-	164	0.18	UUAGAUUCACUGGCUGGGUUA		siRNA21	ShortStack
ghr-b1.1r1-76914	Gossypium hirsutum (Upland Cotton) 1.1	D05:26507534-26507562	-	1,516	1.64	UUAGAUUCAUUGGCUGAGUUA		siRNA21	ShortStack
ghr-b1.1r1-76986	Gossypium hirsutum (Upland Cotton) 1.1	D05:26953250-26953838	.	621	0.67	UUCAACAAGCGGAACCUGCCA		siRNA21	ShortStack
ghr-b1.1r1-77066	Gossypium hirsutum (Upland Cotton) 1.1	D05:27363445-27363557	-	494	0.53	UGUGAAUGAAGCGGGAGAUAA	miR159	siRNA21	ShortStack
ghr-b1.1r1-77446	Gossypium hirsutum (Upland Cotton) 1.1	D05:30706836-30707265	.	1,687	1.82	UUCUUCACAAAUAUCACAAUA		siRNA21	ShortStack
ghr-b1.1r1-77496	Gossypium hirsutum (Upland Cotton) 1.1	D05:31381447-31384161	.	17,064	18.43	UCUGAGGAAUUUGAUGCUUUC		siRNA21	ShortStack
ghr-b1.1r1-77497	Gossypium hirsutum (Upland Cotton) 1.1	D05:31384200-31384784	.	371	0.40	UCUAAUUCUGCACCUGAGAGU		siRNA21	ShortStack
ghr-MIR160-m2	Gossypium hirsutum (Upland Cotton) 1.1	D05:31852168-31852277	-	37,867	40.90	GCGUAUGAGGAGCCAUGCAUG	miR160	siRNA21	miRBase21-BestBlastHit
ghr-b1.1r1-77590	Gossypium hirsutum (Upland Cotton) 1.1	D05:32029059-32029699	.	389	0.42	CUUCCGAUUGUAAUUCCUUUU		siRNA21	ShortStack
ghr-b1.1r1-77592	Gossypium hirsutum (Upland Cotton) 1.1	D05:32030051-32030308	.	169	0.18	CAUUCUGGAAAUCUCGUGCCU		siRNA21	ShortStack
ghr-b1.1r1-77593	Gossypium hirsutum (Upland Cotton) 1.1	D05:32030417-32031110	.	683	0.74	CAGAUUGGAAGGUAAUGGUGA		siRNA21	ShortStack
ghr-b1.1r1-77594	Gossypium hirsutum (Upland Cotton) 1.1	D05:32031256-32031879	.	1,172	1.27	UCUCCAUUAUGAAGACUGUUC		siRNA21	ShortStack
ghr-b1.1r1-77601	Gossypium hirsutum (Upland Cotton) 1.1	D05:32123105-32123863	.	2,194	2.37	UGCGAAGCUGAUCCCUCUUUG		siRNA21	ShortStack
ghr-b1.1r1-77602	Gossypium hirsutum (Upland Cotton) 1.1	D05:32123942-32124224	.	413	0.45	UUGGUCAAUCGUGUAUGACAUG		siRNA21	ShortStack
ghr-b1.1r1-77860	Gossypium hirsutum (Upland Cotton) 1.1	D05:36685081-36685224	-	492	0.53	AUGACUGCGGUAGUACACUGU		siRNA21	ShortStack
ghr-b1.1r1-77924	Gossypium hirsutum (Upland Cotton) 1.1	D05:37818193-37818291	.	525	0.57	UGAAUGGGAUUUUUUAGAGCC		siRNA21	ShortStack
ghr-b1.1r1-77925	Gossypium hirsutum (Upland Cotton) 1.1	D05:37820478-37820743	.	4,406	4.76	AUUUAUUAUUUUUCGGCUCUA		siRNA21	ShortStack
ghr-b1.1r1-77932	Gossypium hirsutum (Upland Cotton) 1.1	D05:38606410-38606626	.	1,502	1.62	CUUCCACGUCUUGUUUUUCUCC		siRNA21	ShortStack
ghr-b1.1r1-78138	Gossypium hirsutum (Upland Cotton) 1.1	D05:46434596-46434888	.	1,319	1.43	UAUACAAGCGUAGGCCUGCA		siRNA21	ShortStack
ghr-b1.1r1-78150	Gossypium hirsutum (Upland Cotton) 1.1	D05:46449439-46449568	.	2,265	2.45	UCUGCUCGUCCCUACUGCCGA		siRNA21	ShortStack
ghr-b1.1r1-78199	Gossypium hirsutum (Upland Cotton) 1.1	D05:46518313-46518431	.	2,967	3.21	CUGCCCUUUGUACACACCGCA		siRNA21	ShortStack
ghr-b1.1r1-78267	Gossypium hirsutum (Upland Cotton) 1.1	D05:46995521-46995632	.	592	0.64	UGAGAAAGUGGAGAUGGGUGG		siRNA21	ShortStack
ghr-b1.1r1-78472	Gossypium hirsutum (Upland Cotton) 1.1	D05:51595704-51595781	+	492	0.53	AAACUCAUCGGCGGAAGAGGA		siRNA21	ShortStack
ghr-b1.1r1-78609	Gossypium hirsutum (Upland Cotton) 1.1	D05:53188847-53189073	-	605	0.65	CACCGUAGAACAUUUGAAGAA		siRNA21	ShortStack
ghr-b1.1r1-78613	Gossypium hirsutum (Upland Cotton) 1.1	D05:53226307-53226834	-	1,887	2.04	UGACAGAAGCACAGAACAUGA		siRNA21	ShortStack
ghr-b1.1r1-78653	Gossypium hirsutum (Upland Cotton) 1.1	D05:53656266-53658010	-	4,281	4.62	AGGAGAAGAUAGGAAUUCCAA		siRNA21	ShortStack
ghr-b1.1r1-78670	Gossypium hirsutum (Upland Cotton) 1.1	D05:53906488-53906656	-	284	0.31	UCCGAGCAAGAAUUAUGGUUA		siRNA21	ShortStack
ghr-b1.1r1-78684	Gossypium hirsutum (Upland Cotton) 1.1	D05:54009216-54009438	-	250	0.27	CGACUGAAGCUGGUGAUCUAG		siRNA21	ShortStack
ghr-b1.1r1-78685	Gossypium hirsutum (Upland Cotton) 1.1	D05:54009609-54010259	.	1,155	1.25	AGAACUUGGUAGGAUAUGCAU		siRNA21	ShortStack
ghr-b1.1r1-78739	Gossypium hirsutum (Upland Cotton) 1.1	D05:54215109-54215235	+	3,924	4.24	ACAGCUUUAGAAAUCAUCCCC	miR7505	siRNA21	ShortStack
ghr-b1.1r1-78744	Gossypium hirsutum (Upland Cotton) 1.1	D05:54231192-54231307	+	337	0.36	ACAGCUUUAGAAAUCAUUCCU	miR7505	siRNA21	ShortStack
ghr-b1.1r1-78754	Gossypium hirsutum (Upland Cotton) 1.1	D05:54327327-54327436	+	1,005	1.09	UUUAGAAAUCGUUCCUUCCUU		siRNA21	ShortStack
ghr-b1.1r1-78762	Gossypium hirsutum (Upland Cotton) 1.1	D05:54385246-54385452	.	2,538	2.74	CAGAAGGAUACACAGAUGCUGG		siRNA21	ShortStack
ghr-b1.1r1-78765	Gossypium hirsutum (Upland Cotton) 1.1	D05:54401848-54401891	+	490	0.53	UUUAGAAAUCGUUCCUUCCUU		siRNA21	ShortStack
ghr-b1.1r1-78793	Gossypium hirsutum (Upland Cotton) 1.1	D05:54819335-54819867	.	2,102	2.27	GCUGAGGCUGUGACGUACGCUC		siRNA21	ShortStack
ghr-b1.1r1-78794	Gossypium hirsutum (Upland Cotton) 1.1	D05:54821162-54821244	.	1,600	1.73	UGAUGGAGUCUUGGACGGUCU		siRNA21	ShortStack
ghr-b1.1r1-78796	Gossypium hirsutum (Upland Cotton) 1.1	D05:54824917-54824946	-	2,975	3.21	UUUAGAAAUCAUUCCUUCCUU		siRNA21	ShortStack
ghr-b1.1r1-78823	Gossypium hirsutum (Upland Cotton) 1.1	D05:54955712-54956319	.	593	0.64	UUUGAACAUAAGAACUGGUUG		siRNA21	ShortStack
ghr-b1.1r1-78838	Gossypium hirsutum (Upland Cotton) 1.1	D05:55014895-55015022	+	2,488	2.69	ACAGCUUUAGAAAUCAUUCCU	miR7505	siRNA21	ShortStack
ghr-b1.1r1-78849	Gossypium hirsutum (Upland Cotton) 1.1	D05:55067825-55067941	+	443	0.48	UUUAGAAAUCGUUCCUUCCUU		siRNA21	ShortStack
ghr-b1.1r1-79009	Gossypium hirsutum (Upland Cotton) 1.1	D05:56846814-56847062	+	340	0.37	UUUAACGGUAGAAAUGGAUGG		siRNA21	ShortStack
ghr-b1.1r1-79293	Gossypium hirsutum (Upland Cotton) 1.1	D05:59127310-59129265	.	7,024	7.59	CGAAAGACUCCUUAAUGCUGG		siRNA21	ShortStack
ghr-b1.1r1-79307	Gossypium hirsutum (Upland Cotton) 1.1	D05:59210062-59210351	.	1,460	1.58	UUUGGAACGAGAGCUACGGUG		siRNA21	ShortStack
ghr-b1.1r1-79319	Gossypium hirsutum (Upland Cotton) 1.1	D05:59405168-59405351	.	174	0.19	UCAAAGAUCUAGUGAAGACAA		siRNA21	ShortStack
ghr-b1.1r1-79453	Gossypium hirsutum (Upland Cotton) 1.1	D05:60040358-60040643	.	1,216	1.31	UUUGACAGUAGAAAUGGAAGA		siRNA21	ShortStack
ghr-b1.1r1-79519	Gossypium hirsutum (Upland Cotton) 1.1	D05:60573868-60573961	-	4,436	4.79	UGACUGUUCUUCUUCAAGAAU		siRNA21	ShortStack
ghr-b1.1r1-79520	Gossypium hirsutum (Upland Cotton) 1.1	D05:60575984-60576008	.	420	0.45	AGGCAGAGACGAGAAAUUCAA		siRNA21	ShortStack
ghr-b1.1r1-79670	Gossypium hirsutum (Upland Cotton) 1.1	D05:61680000-61680099	+	11,873	12.83	CGGACCCUCUAACAGUGGAGG	miR8636	siRNA21	ShortStack
ghr-b1.1r1-79671	Gossypium hirsutum (Upland Cotton) 1.1	D05:61680143-61680268	+	2,642	2.85	UCCAUUGUUUGAGGGUCCGGU	miR8636	siRNA21	ShortStack
ghr-b1.1r1-79937	Gossypium hirsutum (Upland Cotton) 1.1	D06:852266-852373	+	505	0.55	UCAACAGGAGGACUAGUUUGC		siRNA21	ShortStack
ghr-b1.1r1-79950	Gossypium hirsutum (Upland Cotton) 1.1	D06:893216-893367	.	133	0.14	AUGGACAACAGUGAAUGGUAG		siRNA21	ShortStack
ghr-b1.1r1-79951	Gossypium hirsutum (Upland Cotton) 1.1	D06:896519-896637	-	720	0.78	UUAUGGGACUAUGGAUGGCAA		siRNA21	ShortStack
ghr-b1.1r1-79954	Gossypium hirsutum (Upland Cotton) 1.1	D06:904788-904969	+	403	0.44	AUGUAGGAUCAAAGAUUGCAG		siRNA21	ShortStack
ghr-b1.1r1-79955	Gossypium hirsutum (Upland Cotton) 1.1	D06:905101-905216	-	707	0.76	UUAUGGGACUAUGGAUGGCAA		siRNA21	ShortStack
ghr-b1.1r1-79956	Gossypium hirsutum (Upland Cotton) 1.1	D06:923523-923950	.	891	0.96	AUUGAGCAUCAAAGGACUUCA		siRNA21	ShortStack
ghr-b1.1r1-79957	Gossypium hirsutum (Upland Cotton) 1.1	D06:924072-924337	-	825	0.89	AGUGCUGUGUGAUUGAGGCAA		siRNA21	ShortStack
ghr-b1.1r1-80003	Gossypium hirsutum (Upland Cotton) 1.1	D06:1180848-1181217	-	567	0.61	AGCUAGGGGUUGUAAAAACUG		siRNA21	ShortStack
ghr-b1.1r1-80079	Gossypium hirsutum (Upland Cotton) 1.1	D06:1404440-1404495	.	1,014	1.10	UUGCAGAAGUCUCUUUACUAA		siRNA21	ShortStack
ghr-b1.1r1-80090	Gossypium hirsutum (Upland Cotton) 1.1	D06:1473998-1474116	+	901	0.97	UUACUUUCAUUCUGUUCAUCA		siRNA21	ShortStack
ghr-b1.1r1-80297	Gossypium hirsutum (Upland Cotton) 1.1	D06:2214327-2214491	-	4,762	5.14	UAUCUAACGCGUAGGGACUAA	miR7484	siRNA21	ShortStack
ghr-b1.1r1-80360	Gossypium hirsutum (Upland Cotton) 1.1	D06:2585006-2585115	+	515,118	556.43	UGGGACUCUAUAAGAAGGUAA		siRNA21	ShortStack
ghr-b1.1r1-80361	Gossypium hirsutum (Upland Cotton) 1.1	D06:2586006-2586029	+	467	0.50	UACCUUCUUAUAGAGUUCCAC		siRNA21	ShortStack
ghr-b1.1r1-80611	Gossypium hirsutum (Upland Cotton) 1.1	D06:3724060-3724970	.	2,483	2.68	UGACUUUUGUUGAACUACCACAUU		siRNA21	ShortStack
ghr-b1.1r1-80638	Gossypium hirsutum (Upland Cotton) 1.1	D06:4054133-4054170	.	994	1.07	CAAUGAACGAGCACAUUACCA		siRNA21	ShortStack
ghr-b1.1r1-80639	Gossypium hirsutum (Upland Cotton) 1.1	D06:4055521-4055604	.	24,194	26.13	UUCGAGUACCAAGAAGGACGC		siRNA21	ShortStack
ghr-b1.1r1-80640	Gossypium hirsutum (Upland Cotton) 1.1	D06:4056657-4056743	-	491	0.53	CUGCCUUCUGACUGCAAUUGA		siRNA21	ShortStack
ghr-b1.1r1-80656	Gossypium hirsutum (Upland Cotton) 1.1	D06:4328384-4328800	.	839	0.91	AGAGUGAGGCUUAGAGAGUUA		siRNA21	ShortStack
ghr-b1.1r1-81017	Gossypium hirsutum (Upland Cotton) 1.1	D06:6888545-6888711	-	8,338	9.01	CGGAUCGCACGGCCUUUGUGU		siRNA21	ShortStack
ghr-b1.1r1-81385	Gossypium hirsutum (Upland Cotton) 1.1	D06:11527837-11527864	-	406	0.44	CUUUGGACUGUCUCACUCCCU		siRNA21	ShortStack
ghr-b1.1r1-81416	Gossypium hirsutum (Upland Cotton) 1.1	D06:11877357-11878116	.	1,230	1.33	UAGCUUUGAACACAAACGGAU		siRNA21	ShortStack
ghr-b1.1r1-81417	Gossypium hirsutum (Upland Cotton) 1.1	D06:11878305-11879719	.	14,967	16.17	UUUGAACCUUGUAGAGCGAUC		siRNA21	ShortStack
ghr-b1.1r1-81418	Gossypium hirsutum (Upland Cotton) 1.1	D06:11880738-11881661	.	21,021	22.71	AGGAGUUAUGGUGUAGACUGA		siRNA21	ShortStack
ghr-b1.1r1-81563	Gossypium hirsutum (Upland Cotton) 1.1	D06:14426150-14426451	+	2,143	2.32	UCAUGGUCUGUAGCGACGUUU		siRNA21	ShortStack
ghr-b1.1r1-81585	Gossypium hirsutum (Upland Cotton) 1.1	D06:14759060-14759143	-	14,761	15.95	GGGGAUGUAGCUCAAAUGGUA		siRNA21	ShortStack
ghr-b1.1r1-81686	Gossypium hirsutum (Upland Cotton) 1.1	D06:16922663-16923127	.	39,405	42.57	UCGGAAAUACAAGAACCGGUG		siRNA21	ShortStack
ghr-b1.1r1-81742	Gossypium hirsutum (Upland Cotton) 1.1	D06:18120545-18120862	.	260	0.28	UUCCUGGUUUACUUCUUGAGU		siRNA21	ShortStack
ghr-b1.1r1-81745	Gossypium hirsutum (Upland Cotton) 1.1	D06:18340776-18340977	+	722	0.78	CUUCUGAUAAUUGGAAUUCGG		siRNA21	ShortStack
ghr-b1.1r1-81746	Gossypium hirsutum (Upland Cotton) 1.1	D06:18341270-18342258	.	1,873	2.02	UUCAAAUGAAAAUUUUUGUCGGCC		siRNA21	ShortStack
ghr-b1.1r1-81769	Gossypium hirsutum (Upland Cotton) 1.1	D06:18756594-18756736	+	387	0.42	UCAAUUUGAUGGAAAUAGAUG		siRNA21	ShortStack
ghr-b1.1r1-81795	Gossypium hirsutum (Upland Cotton) 1.1	D06:18879979-18880109	+	767	0.83	UCUACAGCUUUAGAAAUCACU		siRNA21	ShortStack
ghr-b1.1r1-81798	Gossypium hirsutum (Upland Cotton) 1.1	D06:18911436-18911978	+	377,211	407.46	UUUAGAAAUCGUUCCUUCCUU		siRNA21	ShortStack
ghr-b1.1r1-82109	Gossypium hirsutum (Upland Cotton) 1.1	D06:24667738-24667772	.	687	0.74	UCCCCAAGCUAGAACAUAUGA		siRNA21	ShortStack
ghr-b1.1r1-82125	Gossypium hirsutum (Upland Cotton) 1.1	D06:24862750-24862776	-	223	0.24	GAUUAGAUCCAGUGACUGGGGGUC		siRNA21	ShortStack
ghr-b1.1r1-82340	Gossypium hirsutum (Upland Cotton) 1.1	D06:36059618-36059644	+	263	0.28	ACCUGAGAGUCCUCUUGCAUC		siRNA21	ShortStack
ghr-b1.1r1-82396	Gossypium hirsutum (Upland Cotton) 1.1	D06:40170356-40171400	.	2,826	3.05	UGAUGGACUAACCGAUGAUGG		siRNA21	ShortStack
ghr-b1.1r1-82531	Gossypium hirsutum (Upland Cotton) 1.1	D06:43205214-43205322	-	4,703	5.08	CCGACCUUAGCUCAGUUGGUA	miR6478	siRNA21	ShortStack
ghr-b1.1r1-82569	Gossypium hirsutum (Upland Cotton) 1.1	D06:44864471-44864944	.	1,579	1.71	UUCACUUCUUCGACUAUGAAAU		siRNA21	ShortStack
ghr-b1.1r1-82579	Gossypium hirsutum (Upland Cotton) 1.1	D06:45555003-45555796	.	507	0.55	AGUGGUUUCCAGGUCGUCCUC		siRNA21	ShortStack
ghr-b1.1r1-82731	Gossypium hirsutum (Upland Cotton) 1.1	D06:50577592-50577668	-	1,923	2.08	UCAGGUCAUCUUGCAGCUUCA	miR167	siRNA21	ShortStack
ghr-b1.1r1-82927	Gossypium hirsutum (Upland Cotton) 1.1	D06:54516950-54517035	-	1,720	1.86	AGAUAUUGGUGCGGUUCAAUU	miR171	siRNA21	ShortStack
ghr-b1.1r1-82932	Gossypium hirsutum (Upland Cotton) 1.1	D06:54559904-54560394	.	446	0.48	CUUAGAGCUCGACGAAGACGA		siRNA21	ShortStack
ghr-b1.1r1-83134	Gossypium hirsutum (Upland Cotton) 1.1	D06:56855510-56855776	.	1,603	1.73	CAAUGUCAGAAACGGUACUUG		siRNA21	ShortStack
ghr-b1.1r1-83135	Gossypium hirsutum (Upland Cotton) 1.1	D06:56855875-56856169	.	3,815	4.12	UAAGGCAGCAUGUGGAAAAGA		siRNA21	ShortStack
ghr-b1.1r1-83437	Gossypium hirsutum (Upland Cotton) 1.1	D06:58840195-58840539	+	1,706	1.84	UCUGAUAAUUGGAAUUCGGAG		siRNA21	ShortStack
ghr-b1.1r1-83438	Gossypium hirsutum (Upland Cotton) 1.1	D06:58840665-58841119	.	2,920	3.15	CAGGAAUUCGUAGAAAAAGGU		siRNA21	ShortStack
ghr-b1.1r1-83488	Gossypium hirsutum (Upland Cotton) 1.1	D06:59128001-59128562	.	520	0.56	UUACUUUAGAAAACAACGGAU		siRNA21	ShortStack
ghr-b1.1r1-83489	Gossypium hirsutum (Upland Cotton) 1.1	D06:59128649-59130145	.	2,177	2.35	CAAAACGAUCGGCAACCCUUU		siRNA21	ShortStack
ghr-b1.1r1-83644	Gossypium hirsutum (Upland Cotton) 1.1	D06:60323934-60325188	.	5,039	5.44	UGGCCUGCAGAGAUAUGGGGU		siRNA21	ShortStack
ghr-b1.1r1-83658	Gossypium hirsutum (Upland Cotton) 1.1	D06:60374488-60375346	+	276,928	299.14	UGCAGUCAACGUGGAAGGCAU		siRNA21	ShortStack
ghr-b1.1r1-83878	Gossypium hirsutum (Upland Cotton) 1.1	D06:61456991-61458725	.	24,321	26.27	UUAAAGUUGUUAUCUGGGCGG		siRNA21	ShortStack
ghr-b1.1r1-83880	Gossypium hirsutum (Upland Cotton) 1.1	D06:61461718-61462640	.	1,733	1.87	AGAGAUUUGUUGUAUUAUUGG		siRNA21	ShortStack
ghr-b1.1r1-83900	Gossypium hirsutum (Upland Cotton) 1.1	D06:61548300-61548491	+	751	0.81	UCUGAGUAGAGGAGCCAAAAU		siRNA21	ShortStack
ghr-b1.1r1-84099	Gossypium hirsutum (Upland Cotton) 1.1	D06:62744516-62745200	.	13,478	14.56	UUCGAGUACCAAGAAGGACGC		siRNA21	ShortStack
ghr-b1.1r1-84420	Gossypium hirsutum (Upland Cotton) 1.1	D06:63832158-63832353	+	623	0.67	UUUCCUCGGCGGCACCUUUUC		siRNA21	ShortStack
ghr-b1.1r1-84421	Gossypium hirsutum (Upland Cotton) 1.1	D06:63833326-63833723	+	1,339	1.45	CUAAAGAUGGCACUGAAGAAG		siRNA21	ShortStack
ghr-b1.1r1-84499	Gossypium hirsutum (Upland Cotton) 1.1	D06:64077060-64077853	.	7,123	7.69	UGGAGGAGAGGUAGCAAGCGC		siRNA21	ShortStack
ghr-b1.1r1-84806	Gossypium hirsutum (Upland Cotton) 1.1	D07:1563047-1563703	-	88,792	95.91	UGGAGACUGUCAAAGACGCCC		siRNA21	ShortStack
ghr-b1.1r1-85001	Gossypium hirsutum (Upland Cotton) 1.1	D07:2370984-2371253	.	1,281	1.38	UAAGGUUAUAGAACAUGGGUU		siRNA21	ShortStack
ghr-b1.1r1-85258	Gossypium hirsutum (Upland Cotton) 1.1	D07:3535170-3535190	-	389	0.42	UGAAGCUGCCUGCAUGAUCUC	miR167	siRNA21	ShortStack
ghr-b1.1r1-85349	Gossypium hirsutum (Upland Cotton) 1.1	D07:4055440-4055986	+	1,139	1.23	UGUUUGAAGCAUUUGGGACGG		siRNA21	ShortStack
ghr-b1.1r1-85362	Gossypium hirsutum (Upland Cotton) 1.1	D07:4130360-4130493	+	15,347	16.58	UUCCACAGCUUUCUUGAACUU	miR396	siRNA21	ShortStack
ghr-b1.1r1-85523	Gossypium hirsutum (Upland Cotton) 1.1	D07:4857827-4858012	-	948	1.02	UAAUGUGGAACAAUUGCUGAG		siRNA21	ShortStack
ghr-b1.1r1-85714	Gossypium hirsutum (Upland Cotton) 1.1	D07:5822593-5822697	-	1,225	1.32	ACAAACAAACGGGCAAGCAGA		siRNA21	ShortStack
ghr-b1.1r1-85797	Gossypium hirsutum (Upland Cotton) 1.1	D07:6120794-6120883	-	781	0.84	UAACAAGAGGACCAGUUUGCU		siRNA21	ShortStack
ghr-b1.1r1-85976	Gossypium hirsutum (Upland Cotton) 1.1	D07:7051984-7052159	-	1,217	1.32	UUGACUCCCAGGUAGAUGACA		siRNA21	ShortStack
ghr-b1.1r1-86008	Gossypium hirsutum (Upland Cotton) 1.1	D07:7216736-7216763	+	386	0.42	AUGUUCGACUGAAUGCGCAUU		siRNA21	ShortStack
ghr-b1.1r1-86137	Gossypium hirsutum (Upland Cotton) 1.1	D07:7971861-7972880	.	2,200	2.38	AUAUCUGAACAUCUAUUUCUU		siRNA21	ShortStack
ghr-b1.1r1-86276	Gossypium hirsutum (Upland Cotton) 1.1	D07:8928234-8928862	.	1,820	1.97	AUGAACAGUGGAGAUCGAUAU		siRNA21	ShortStack
ghr-b1.1r1-86302	Gossypium hirsutum (Upland Cotton) 1.1	D07:9034018-9034489	.	3,978	4.30	AAUUAUCCGACGGCUAAUCUU		siRNA21	ShortStack
ghr-b1.1r1-86303	Gossypium hirsutum (Upland Cotton) 1.1	D07:9045654-9045824	.	780	0.84	AGGAUCUGACUGUAUUUGGUGC		siRNA21	ShortStack
ghr-b1.1r1-86452	Gossypium hirsutum (Upland Cotton) 1.1	D07:10386083-10386413	.	976	1.05	AUUUUCAUCCACUUCUACUGU		siRNA21	ShortStack
ghr-b1.1r1-86453	Gossypium hirsutum (Upland Cotton) 1.1	D07:10387515-10387679	.	1,449	1.57	UCUGACUCCUAGUACAAUGGCCUC		siRNA21	ShortStack
ghr-b1.1r1-86454	Gossypium hirsutum (Upland Cotton) 1.1	D07:10387760-10387846	.	174	0.19	AUGGAGGCUCUUUUACUAGGA		siRNA21	ShortStack
ghr-b1.1r1-86694	Gossypium hirsutum (Upland Cotton) 1.1	D07:12057203-12057603	.	955	1.03	AACUCACACACACAUCUUGACGCA		siRNA21	ShortStack
ghr-b1.1r1-86840	Gossypium hirsutum (Upland Cotton) 1.1	D07:13391596-13392151	.	1,195	1.29	UUAGGUACAUAAGAAAGUCGG		siRNA21	ShortStack
ghr-b1.1r1-87158	Gossypium hirsutum (Upland Cotton) 1.1	D07:16979992-16980499	.	3,660	3.95	CUAUGACUGUGAAGACGACAU		siRNA21	ShortStack
ghr-b1.1r1-87352	Gossypium hirsutum (Upland Cotton) 1.1	D07:19528759-19529969	.	7,614	8.23	UAGGGGAGGAUGGUGGAUGAG		siRNA21	ShortStack
ghr-b1.1r1-87454	Gossypium hirsutum (Upland Cotton) 1.1	D07:20463472-20463498	+	254	0.27	CUUCUGAUAAUUGGAAUUCGG		siRNA21	ShortStack
ghr-b1.1r1-87517	Gossypium hirsutum (Upland Cotton) 1.1	D07:21223219-21223263	+	1,240	1.34	UUUCCUGCGGUCUAUCUACUC		siRNA21	ShortStack
ghr-b1.1r1-87518	Gossypium hirsutum (Upland Cotton) 1.1	D07:21229613-21230204	.	1,191	1.29	UUGCACGUGCAGAAGAUCUUG		siRNA21	ShortStack
ghr-b1.1r1-87550	Gossypium hirsutum (Upland Cotton) 1.1	D07:21637246-21637460	-	6,952	7.51	UCGGACCAGGCUUCAUUCCCC	miR166	siRNA21	ShortStack
ghr-b1.1r1-87612	Gossypium hirsutum (Upland Cotton) 1.1	D07:22135864-22136516	.	902	0.97	AGAUUUGUAGCUCCGAGACGG		siRNA21	ShortStack
ghr-b1.1r1-87819	Gossypium hirsutum (Upland Cotton) 1.1	D07:25191906-25192051	.	3,078	3.33	UUAGGUACAUAAGAAAGUCGG		siRNA21	ShortStack
ghr-b1.1r1-87820	Gossypium hirsutum (Upland Cotton) 1.1	D07:25192131-25192253	-	1,195	1.29	UCAAUGGGGCAUAGAUAAGAA		siRNA21	ShortStack
ghr-b1.1r1-88089	Gossypium hirsutum (Upland Cotton) 1.1	D07:29800211-29800576	.	454	0.49	UUCCAACUCGUUUAAAGAACC		siRNA21	ShortStack
ghr-b1.1r1-88210	Gossypium hirsutum (Upland Cotton) 1.1	D07:32881602-32882918	.	8,584	9.27	UUUUCCUACGAAUUCCUGACU		siRNA21	ShortStack
TAS3-DW502659_Xie2015	Gossypium hirsutum (Upland Cotton) 1.1	D07:46743626-46744160	.	74,757	80.75	UUCUCGAACUUUUGAUGAAAA		siRNA21	Xie_et_al_2015
ghr-b1.1r1-88734	Gossypium hirsutum (Upland Cotton) 1.1	D07:46743630-46744196	.	74,763	80.76	UUCUCGAACUUUUGAUGAAAA		siRNA21	ShortStack
ghr-b1.1r1-88780	Gossypium hirsutum (Upland Cotton) 1.1	D07:47642461-47642648	.	992	1.07	UGAGCAGAGUGUGGUAAUUCU		siRNA21	ShortStack
ghr-b1.1r1-89010	Gossypium hirsutum (Upland Cotton) 1.1	D07:49928233-49928588	.	3,741	4.04	CAGAACCCGUCAUUGUAGAAA		siRNA21	ShortStack
ghr-b1.1r1-89011	Gossypium hirsutum (Upland Cotton) 1.1	D07:49928669-49929935	.	69,723	75.31	UAUGUCGGUGCAUAUAUGAAG		siRNA21	ShortStack
ghr-b1.1r1-89087	Gossypium hirsutum (Upland Cotton) 1.1	D07:50437915-50438008	.	569	0.62	UCGAAGGAAGAGAGCAAAUCA		siRNA21	ShortStack
ghr-b1.1r1-89210	Gossypium hirsutum (Upland Cotton) 1.1	D07:50990293-50990314	-	484	0.52	GAAAAUAAGAAAACGGACUUG		siRNA21	ShortStack
ghr-b1.1r1-89230	Gossypium hirsutum (Upland Cotton) 1.1	D07:51139181-51139427	.	699	0.76	UCAAUGGGGCAUAGAUAAGAA		siRNA21	ShortStack
ghr-b1.1r1-89292	Gossypium hirsutum (Upland Cotton) 1.1	D07:51370811-51371809	.	2,711	2.93	UUCAACCAGGUAGACGAUAUU		siRNA21	ShortStack
ghr-b1.1r1-89604	Gossypium hirsutum (Upland Cotton) 1.1	D07:53345303-53345562	.	337	0.36	UGAGCUGUAUGUCAAAGAGGA		siRNA21	ShortStack
ghr-b1.1r1-89719	Gossypium hirsutum (Upland Cotton) 1.1	D07:53809996-53810753	.	3,066	3.31	UCAGGAUGUACAUACUGCAGA		siRNA21	ShortStack
ghr-b1.1r1-89826	Gossypium hirsutum (Upland Cotton) 1.1	D07:54625080-54625697	.	1,130	1.22	UAAACUGCGACAAUGAAGAGG		siRNA21	ShortStack
ghr-b1.1r1-89839	Gossypium hirsutum (Upland Cotton) 1.1	D07:54739306-54740099	.	15,197	16.42	ACAAGACAGCUCUGCUAGCAGG		siRNA21	ShortStack
ghr-b1.1r1-89862	Gossypium hirsutum (Upland Cotton) 1.1	D07:54904436-54905095	.	7,710	8.33	AUAAACGAAAGUGAACAGCUG		siRNA21	ShortStack
ghr-b1.1r1-89864	Gossypium hirsutum (Upland Cotton) 1.1	D07:54911181-54911576	.	2,003	2.16	CUUCAGAUUUUGUUGAGACCA		siRNA21	ShortStack
ghr-b1.1r1-89871	Gossypium hirsutum (Upland Cotton) 1.1	D07:54960419-54961278	-	2,335	2.52	UAGCCAAGAAUGACUUGCCUG	miR169	siRNA21	ShortStack
ghr-b1.1r1-89912	Gossypium hirsutum (Upland Cotton) 1.1	D08:182172-182201	+	3,283	3.55	AGAAUCCUGAUGAUGCUGCAG	miR172	siRNA21	ShortStack
ghr-b1.1r1-90345	Gossypium hirsutum (Upland Cotton) 1.1	D08:2017093-2017156	-	651	0.70	UGAUGGGGGUAGCAUAGCAUU		siRNA21	ShortStack
ghr-b1.1r1-90346	Gossypium hirsutum (Upland Cotton) 1.1	D08:2017834-2017950	.	521	0.56	ACGGAGGAAUGCAUUUGGUUC		siRNA21	ShortStack
ghr-b1.1r1-90347	Gossypium hirsutum (Upland Cotton) 1.1	D08:2018047-2018140	.	483	0.52	UUCCUGCAGAGCAUUAAAAUU		siRNA21	ShortStack
ghr-b1.1r1-90349	Gossypium hirsutum (Upland Cotton) 1.1	D08:2020930-2021113	.	1,096	1.18	CAUCGUCGGAAUGAGCGGAGC		siRNA21	ShortStack
ghr-b1.1r1-90411	Gossypium hirsutum (Upland Cotton) 1.1	D08:2247886-2247967	-	1,784	1.93	CAAGUUGAUAGAUUUUGAUGG		siRNA21	ShortStack
ghr-b1.1r1-90487	Gossypium hirsutum (Upland Cotton) 1.1	D08:2511635-2511744	.	1,497	1.62	UUACAUGCAGAUGAGUGGAUC		siRNA21	ShortStack
ghr-b1.1r1-91043	Gossypium hirsutum (Upland Cotton) 1.1	D08:5228144-5228266	.	271	0.29	AUAGAUGAGAGGGGACCUCCUG		siRNA21	ShortStack
ghr-b1.1r1-91235	Gossypium hirsutum (Upland Cotton) 1.1	D08:6376429-6376938	-	28,695	31.00	UGAGGAGCUGGGAUUGGUUGA		siRNA21	ShortStack
ghr-b1.1r1-91657	Gossypium hirsutum (Upland Cotton) 1.1	D08:11429149-11430340	.	2,894	3.13	UUUGGACAAUGGAUGAAGAUU	miR6284	siRNA21	ShortStack
ghr-b1.1r1-91817	Gossypium hirsutum (Upland Cotton) 1.1	D08:14623654-14624188	.	1,571	1.70	CUAGGGAGUGAAGCUUGGCCU		siRNA21	ShortStack
ghr-b1.1r1-91869	Gossypium hirsutum (Upland Cotton) 1.1	D08:15482465-15482515	.	1,058	1.14	CAGAACAUCUAAGGGCAUCAA		siRNA21	ShortStack
ghr-b1.1r1-91913	Gossypium hirsutum (Upland Cotton) 1.1	D08:16005061-16005574	.	955	1.03	UCGAUCACUGGUAGGGGCAUA		siRNA21	ShortStack
ghr-b1.1r1-92152	Gossypium hirsutum (Upland Cotton) 1.1	D08:25736803-25738181	+	50,572	54.63	GGAGAGAUGGCUGAGUGGACUAA		siRNA21	ShortStack
ghr-b1.1r1-92209	Gossypium hirsutum (Upland Cotton) 1.1	D08:29645881-29646111	-	1,166	1.26	UGUGGCAAAGCGAGCUUCUAG		siRNA21	ShortStack
ghr-b1.1r1-92300	Gossypium hirsutum (Upland Cotton) 1.1	D08:33251380-33251457	+	2,106	2.28	CGAGCCGAAUCAAUAUCACUC	miR171	siRNA21	ShortStack
ghr-b1.1r1-92622	Gossypium hirsutum (Upland Cotton) 1.1	D08:42370086-42370767	.	1,537	1.66	UGUAGAGCUUAUCGACCGGGU		siRNA21	ShortStack
ghr-b1.1r1-92754	Gossypium hirsutum (Upland Cotton) 1.1	D08:44842195-44842465	.	7,961	8.60	AAGAUCCUUGGGAACUACCCG		siRNA21	ShortStack
ghr-b1.1r1-92755	Gossypium hirsutum (Upland Cotton) 1.1	D08:44842566-44842821	.	17,732	19.15	AAGGGUUCUGGAAAGUGACGG		siRNA21	ShortStack
ghr-b1.1r1-92756	Gossypium hirsutum (Upland Cotton) 1.1	D08:44843154-44843842	.	59,792	64.59	AAAGAACGAGACAGAGAGCAU		siRNA21	ShortStack
ghr-b1.1r1-92757	Gossypium hirsutum (Upland Cotton) 1.1	D08:44845100-44846511	.	15,941	17.22	AGGGACAGGAUGGUAUCUCUC		siRNA21	ShortStack
ghr-b1.1r1-92791	Gossypium hirsutum (Upland Cotton) 1.1	D08:45570142-45570361	.	1,376	1.49	CGAAGAACAGCGGAAGAACAC		siRNA21	ShortStack
ghr-b1.1r1-92923	Gossypium hirsutum (Upland Cotton) 1.1	D08:47569302-47569551	.	554	0.60	UCUGACAGUGCACUGAAAACG	miR8640	siRNA21	ShortStack
ghr-b1.1r1-92952	Gossypium hirsutum (Upland Cotton) 1.1	D08:47815731-47815766	+	819	0.89	ACACUAAUAUCAAGCAACUUC		siRNA21	ShortStack
ghr-b1.1r1-92953	Gossypium hirsutum (Upland Cotton) 1.1	D08:47816719-47816749	-	488	0.53	ACACUAAUAUCAAGCAACUUC		siRNA21	ShortStack
ghr-b1.1r1-93132	Gossypium hirsutum (Upland Cotton) 1.1	D08:50127011-50128817	.	6,050	6.54	ACGAGCUGCAAGUUGAAGUGA		siRNA21	ShortStack
ghr-b1.1r1-93152	Gossypium hirsutum (Upland Cotton) 1.1	D08:50264930-50264991	.	1,879	2.03	UCAUCUGAAUGGAACGACGAC		siRNA21	ShortStack
ghr-b1.1r1-93247	Gossypium hirsutum (Upland Cotton) 1.1	D08:51028038-51028226	+	1,175	1.27	AGGGGCGCUUCUCUCCGGUUU		siRNA21	ShortStack
ghr-b1.1r1-93306	Gossypium hirsutum (Upland Cotton) 1.1	D08:52111843-52112067	.	377	0.41	CUUCAGAUUUUGUUGAGACCA		siRNA21	ShortStack
ghr-b1.1r1-93428	Gossypium hirsutum (Upland Cotton) 1.1	D08:53363937-53364227	+	1,663	1.80	UGGAGUAGCGAUUUUGCCAUG		siRNA21	ShortStack
ghr-b1.1r1-93602	Gossypium hirsutum (Upland Cotton) 1.1	D08:55005208-55005965	.	75,304	81.34	CUUCUUCCAUCUGGACAGUUU		siRNA21	ShortStack
ghr-b1.1r1-94258	Gossypium hirsutum (Upland Cotton) 1.1	D08:59779353-59780061	.	15,047	16.25	UUGGAAACAAGAAGACUUUGC		siRNA21	ShortStack
ghr-b1.1r1-94260	Gossypium hirsutum (Upland Cotton) 1.1	D08:59780699-59781563	.	8,979	9.70	UAUGUAUCGACGGUGCGGCAA		siRNA21	ShortStack
ghr-b1.1r1-94426	Gossypium hirsutum (Upland Cotton) 1.1	D08:61013930-61014102	+	5,568	6.01	CGCUAUCUAUCCUGAGUUUCA	miR390	siRNA21	ShortStack
ghr-b1.1r1-94635	Gossypium hirsutum (Upland Cotton) 1.1	D08:62067164-62069111	.	14,688	15.87	UUGGAGAAGAUGAUGAAUUAG		siRNA21	ShortStack
ghr-b1.1r1-94638	Gossypium hirsutum (Upland Cotton) 1.1	D08:62093270-62093291	-	3,668	3.96	ACAGCUUUAGAAAUCAUCCCC	miR7505	siRNA21	ShortStack
ghr-b1.1r1-94639	Gossypium hirsutum (Upland Cotton) 1.1	D08:62093373-62093397	-	3,729	4.03	ACAGCUUUAGAAAUCAUCCCC	miR7505	siRNA21	ShortStack
ghr-b1.1r1-95103	Gossypium hirsutum (Upland Cotton) 1.1	D08:64652520-64653074	.	5,824	6.29	AAGCAUUCGGGACGGAUUCUG		siRNA21	ShortStack
ghr-b1.1r1-95295	Gossypium hirsutum (Upland Cotton) 1.1	D08:65360103-65360578	+	3,397	3.67	UCGAGAAUGACUAUAGGUGAC		siRNA21	ShortStack
ghr-b1.1r1-95362	Gossypium hirsutum (Upland Cotton) 1.1	D08:65759597-65759823	+	799	0.86	UAGACACUCUGGGCACAAUAG	miR8680	siRNA21	ShortStack
ghr-b1.1r1-95548	Gossypium hirsutum (Upland Cotton) 1.1	D09:1845891-1846207	.	439	0.47	AAUUCGUGAACAAUGUGUGGU		siRNA21	ShortStack
ghr-b1.1r1-95608	Gossypium hirsutum (Upland Cotton) 1.1	D09:2334071-2334249	-	4,007	4.33	CAGAAACAAAGAAAGAAGGCA		siRNA21	ShortStack
ghr-b1.1r1-95609	Gossypium hirsutum (Upland Cotton) 1.1	D09:2334388-2334740	-	113,425	122.52	UUUUGGAAGAAUUUCAGCUGG	miR8718	siRNA21	ShortStack
ghr-b1.1r1-95708	Gossypium hirsutum (Upland Cotton) 1.1	D09:3070543-3070594	-	404	0.44	CGGCAAGUCAUCAUUGGCUAUA		siRNA21	ShortStack
ghr-b1.1r1-95709	Gossypium hirsutum (Upland Cotton) 1.1	D09:3070694-3070758	-	753	0.81	UGUGAAAAUCAGGCAAUGUUU		siRNA21	ShortStack
ghr-b1.1r1-96253	Gossypium hirsutum (Upland Cotton) 1.1	D09:11955582-11955978	.	323	0.35	UUAGAGGUAGCAGAAGAAUAU		siRNA21	ShortStack
ghr-b1.1r1-96331	Gossypium hirsutum (Upland Cotton) 1.1	D09:14757739-14758378	.	1,258	1.36	UUGAAUGAUCUGGAAUUCUUC		siRNA21	ShortStack
ghr-b1.1r1-96340	Gossypium hirsutum (Upland Cotton) 1.1	D09:14948548-14948580	+	593	0.64	CUUCUUUCGUUUCUCGACGGU		siRNA21	ShortStack
ghr-b1.1r1-96436	Gossypium hirsutum (Upland Cotton) 1.1	D09:20651233-20653652	.	4,470	4.83	CGGUAGAACACUCUUGCACCC		siRNA21	ShortStack
ghr-b1.1r1-96595	Gossypium hirsutum (Upland Cotton) 1.1	D09:25412702-25413215	.	578	0.62	UGGUUUACCUCAGGAGCUGCA		siRNA21	ShortStack
ghr-b1.1r1-96679	Gossypium hirsutum (Upland Cotton) 1.1	D09:27343040-27343066	+	213	0.23	GUUUUUAAAAUUGGUCGUUGU		siRNA21	ShortStack
ghr-b1.1r1-96685	Gossypium hirsutum (Upland Cotton) 1.1	D09:27469040-27469449	.	4,151	4.48	UUUUCGUAUACUGGUGCCGGC		siRNA21	ShortStack
ghr-b1.1r1-96686	Gossypium hirsutum (Upland Cotton) 1.1	D09:27472088-27472471	+	987	1.07	UUGGGUUGUCAUUGGCAGGCA		siRNA21	ShortStack
ghr-b1.1r1-96687	Gossypium hirsutum (Upland Cotton) 1.1	D09:27473768-27473796	.	82	0.09	UUCGUAUACUGGUGCCGACC		siRNA21	ShortStack
ghr-b1.1r1-96794	Gossypium hirsutum (Upland Cotton) 1.1	D09:28814354-28814759	.	1,095	1.18	UCUGACAGUGCACUGAAAACG	miR8640	siRNA21	ShortStack
ghr-b1.1r1-96828	Gossypium hirsutum (Upland Cotton) 1.1	D09:29194516-29195078	.	720	0.78	ACGAGCGGUGCACAGAGUAGGUCA		siRNA21	ShortStack
ghr-b1.1r1-96851	Gossypium hirsutum (Upland Cotton) 1.1	D09:29479111-29479817	.	4,401	4.75	GAAGGUUUAACUGUGGAUGAGCGG		siRNA21	ShortStack
ghr-b1.1r1-96998	Gossypium hirsutum (Upland Cotton) 1.1	D09:31022056-31022405	.	203	0.22	GAUGUUGAAACUGAGAGUUCA		siRNA21	ShortStack
ghr-b1.1r1-96999	Gossypium hirsutum (Upland Cotton) 1.1	D09:31022439-31022824	.	207	0.22	UCGUUACUUGACUCUCGUUGU		siRNA21	ShortStack
ghr-b1.1r1-97127	Gossypium hirsutum (Upland Cotton) 1.1	D09:31862238-31862336	+	2,832	3.06	CAACGGUGGAGGUAUUGUGCU	miR8759	siRNA21	ShortStack
ghr-b1.1r1-97377	Gossypium hirsutum (Upland Cotton) 1.1	D09:33379874-33380055	+	552	0.60	CUUUGGUAUAGGUUCAAAUCCU		siRNA21	ShortStack
ghr-b1.1r1-97382	Gossypium hirsutum (Upland Cotton) 1.1	D09:33441730-33441848	-	442	0.48	AUUUGGAACAUGGUUAGUGAC		siRNA21	ShortStack
ghr-b1.1r1-97464	Gossypium hirsutum (Upland Cotton) 1.1	D09:34022461-34022701	-	768	0.83	AAACAAGAAUUCUUGAACAGU		siRNA21	ShortStack
ghr-b1.1r1-97494	Gossypium hirsutum (Upland Cotton) 1.1	D09:34169152-34170106	.	5,463	5.90	CUUCAGAUUUUGUUGAGACCA		siRNA21	ShortStack
ghr-b1.1r1-97495	Gossypium hirsutum (Upland Cotton) 1.1	D09:34170420-34170846	.	1,111	1.20	CCGAUAAUUGGAACUAGGAGCAUA		siRNA21	ShortStack
ghr-b1.1r1-97783	Gossypium hirsutum (Upland Cotton) 1.1	D09:35816745-35817970	+	12,175	13.15	AUUCAAUGGACUCUGAAUCAGAAG		siRNA21	ShortStack
ghr-b1.1r1-98595	Gossypium hirsutum (Upland Cotton) 1.1	D09:40925756-40925897	.	813	0.88	CCAAAACAGGUGGAGUUUGAGU		siRNA21	ShortStack
ghr-b1.1r1-98709	Gossypium hirsutum (Upland Cotton) 1.1	D09:41743236-41743335	-	2,567	2.77	GUGCUUUGGUCGUCUUGCUUU		siRNA21	ShortStack
ghr-b1.1r1-98831	Gossypium hirsutum (Upland Cotton) 1.1	D09:42419699-42419799	+	1,113	1.20	UAUGGAUUUUACCUCGUUGUU		siRNA21	ShortStack
ghr-b1.1r1-98836	Gossypium hirsutum (Upland Cotton) 1.1	D09:42463417-42464687	.	45,442	49.09	UUGUUAUGACUCUUUUCGCUG		siRNA21	ShortStack
ghr-b1.1r1-98934	Gossypium hirsutum (Upland Cotton) 1.1	D09:43046613-43047462	.	2,391	2.58	UAUUGGAACAACACCCUGCCU		siRNA21	ShortStack
ghr-b1.1r1-99087	Gossypium hirsutum (Upland Cotton) 1.1	D09:43897195-43897556	+	2,872	3.10	UUUAAUUAAAAAUGUCGCAUG		siRNA21	ShortStack
ghr-b1.1r1-99153	Gossypium hirsutum (Upland Cotton) 1.1	D09:44289730-44290080	-	82,297	88.90	UUUGGAUUGAAGGGAGCUCUA	miR159	siRNA21	ShortStack
ghr-b1.1r1-99260	Gossypium hirsutum (Upland Cotton) 1.1	D09:44823613-44823967	.	727	0.79	CUUCAGAUUUUGUUGAGACCA		siRNA21	ShortStack
ghr-b1.1r1-99734	Gossypium hirsutum (Upland Cotton) 1.1	D09:47326594-47327105	.	398	0.43	UUUCCGAGAACUCGAACUUCU		siRNA21	ShortStack
ghr-b1.1r1-99867	Gossypium hirsutum (Upland Cotton) 1.1	D09:48197665-48198405	.	362	0.39	UCGUCUGUAGAGGAGGUCGCA		siRNA21	ShortStack
ghr-b1.1r1-100358	Gossypium hirsutum (Upland Cotton) 1.1	D09:50756177-50757235	-	85,026	91.84	UUCUGCGGCUUCGGCAUGGAC		siRNA21	ShortStack
ghr-b1.1r1-100546	Gossypium hirsutum (Upland Cotton) 1.1	D10:923585-923608	-	425	0.46	UUAAUUUCAUUGAAUUUGUAG		siRNA21	ShortStack
ghr-b1.1r1-100568	Gossypium hirsutum (Upland Cotton) 1.1	D10:985136-985280	+	8,389	9.06	UUGGUGCGGUUCAAUCAGAUA	miR171	siRNA21	ShortStack
ghr-b1.1r1-100577	Gossypium hirsutum (Upland Cotton) 1.1	D10:1033081-1033387	-	1,777	1.92	AGGUCCUCAUAUUAGAAGUCGGAU		siRNA21	ShortStack
ghr-b1.1r1-100616	Gossypium hirsutum (Upland Cotton) 1.1	D10:1138564-1138688	+	4,578	4.95	UCGGAUCUUCAAACGGUGGAG	miR8635	siRNA21	ShortStack
ghr-b1.1r1-100897	Gossypium hirsutum (Upland Cotton) 1.1	D10:2297958-2298496	.	1,593	1.72	UCUGAAAUACGACGGUGCUUU		siRNA21	ShortStack
ghr-b1.1r1-100960	Gossypium hirsutum (Upland Cotton) 1.1	D10:2587834-2587916	+	506	0.55	CAAGUUAGUCCCUGAACAUCA		siRNA21	ShortStack
ghr-b1.1r1-100962	Gossypium hirsutum (Upland Cotton) 1.1	D10:2590408-2590501	.	325	0.35	UCAGGAGAGACUGCAUUUCUU		siRNA21	ShortStack
ghr-b1.1r1-101233	Gossypium hirsutum (Upland Cotton) 1.1	D10:4000162-4000601	.	44,371	47.93	CAGACACUGUUCACGAACUCC		siRNA21	ShortStack
ghr-b1.1r1-101234	Gossypium hirsutum (Upland Cotton) 1.1	D10:4000757-4000934	.	7,819	8.45	AGAAGAACAUCAUUCUCCCGG		siRNA21	ShortStack
ghr-b1.1r1-101263	Gossypium hirsutum (Upland Cotton) 1.1	D10:4092980-4093004	-	5,794	6.26	UCAGAUCAUCUUGCAGCUUCA	miR167	siRNA21	ShortStack
ghr-b1.1r1-101621	Gossypium hirsutum (Upland Cotton) 1.1	D10:6166250-6166918	-	5,755	6.22	CGACUCAAAAUAGAAGACUGC		siRNA21	ShortStack
ghr-b1.1r1-101622	Gossypium hirsutum (Upland Cotton) 1.1	D10:6168968-6169716	.	10,768	11.63	UGCAAGGAAGGUAAACUGGCA		siRNA21	ShortStack
ghr-b1.1r1-101744	Gossypium hirsutum (Upland Cotton) 1.1	D10:7308707-7309863	.	3,037	3.28	UGUGGAGUGAAGAUGCAACAA		siRNA21	ShortStack
ghr-b1.1r1-101765	Gossypium hirsutum (Upland Cotton) 1.1	D10:7621605-7621681	.	529	0.57	UCCUCCUGUUGACCUCUUGCU		siRNA21	ShortStack
ghr-b1.1r1-101861	Gossypium hirsutum (Upland Cotton) 1.1	D10:8245950-8246127	.	221	0.24	GAGUAGCCUUUGACAAAGCGG		siRNA21	ShortStack