| Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
|---|
| ghr-b1.1r1-3273 | Gossypium hirsutum (Upland Cotton) 1.1 | A01:96117836-96117982 | - | 2,315 | 2.50 | CUUUUUAGGGAUCAUGGCACC | | MIRNA | ShortStack |
| ghr-b1.1r1-3742 | Gossypium hirsutum (Upland Cotton) 1.1 | A01:98751102-98751204 | - | 37,692 | 40.72 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | ShortStack |
| ghr-b1.1r1-4027 | Gossypium hirsutum (Upland Cotton) 1.1 | A01:99851783-99851906 | + | 29,280 | 31.63 | CGCUAUCCAUCCUGAGUUUCA | miR390 | MIRNA | ShortStack |
| ghr-b1.1r1-4292 | Gossypium hirsutum (Upland Cotton) 1.1 | A02:1494957-1495055 | + | 61,027 | 65.92 | UGUGUUCUCAGGUCGCCCCUG | miR398 | MIRNA | ShortStack |
| ghr-b1.1r1-4806 | Gossypium hirsutum (Upland Cotton) 1.1 | A02:4070105-4070295 | - | 6,814,419 | 7,360.87 | UUGGACAGAGUAAUCACGGUCG | | MIRNA | ShortStack |
| ghr-MIR2949b-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:1088041-1088222 | - | 56,060 | 60.56 | UUUUGAACUGGAUUUGCCGACU | miR2949 | MIRNA | miRBase21-BestBlastHit |
| ghr-MIR2949c-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:1088041-1088222 | - | 56,060 | 60.56 | UUUUGAACUGGAUUUGCCGACU | miR2949 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-7522 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:1088052-1088192 | - | 56,060 | 60.56 | UUUUGAACUGGAUUUGCCGACU | miR2949 | MIRNA | ShortStack |
| ghr-b1.1r1-7533 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:1160433-1160540 | + | 116,861 | 126.23 | UGAACUGGGUUUGUUGGCUGC | miR3476 | MIRNA | ShortStack |
| ghr-b1.1r1-8076 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:4112923-4113102 | + | 128,068 | 138.34 | AGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | ShortStack |
| ghr-b1.1r1-8444 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:7838483-7838625 | + | 3,225 | 3.48 | UGCUGAAGAGUGAGAGCGCAU | | MIRNA | ShortStack |
| ghr-b1.1r1-8930 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:20884071-20884198 | - | 184,317 | 199.10 | UCGAUAAACCUCUGCAUCCAG | miR162 | MIRNA | ShortStack |
| ghr-MIR162a-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:20884075-20884190 | - | 184,317 | 199.10 | UCGAUAAACCUCUGCAUCCAG | miR162 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-10131 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:91049729-91049904 | + | 29,281 | 31.63 | UUUCCUAUGCCCCCCAUUCCAC | miR482 | MIRNA | ShortStack |
| ghr-b1.1r1-10935 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:98266460-98266547 | - | 449 | 0.49 | CCAGUUUUGGUCUCUCUGAUG | | MIRNA | ShortStack |
| ghr-MIR482a-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | A04:55743993-55744163 | - | 32,582 | 35.20 | UCUUUCCUACUCCUCCCAUACC | miR482 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-13575 | Gossypium hirsutum (Upland Cotton) 1.1 | A04:60064094-60064180 | - | 333 | 0.36 | AAGGCAAAGGAAGAAAAGAGUGA | | MIRNA | ShortStack |
| ghr-b1.1r1-13985 | Gossypium hirsutum (Upland Cotton) 1.1 | A04:62193968-62194229 | - | 22,954 | 24.80 | UCGGACCAGGCUUCAUUCCUC | miR166 | MIRNA | ShortStack |
| ghr-b1.1r1-14595 | Gossypium hirsutum (Upland Cotton) 1.1 | A05:5233608-5233761 | + | 472,166 | 510.03 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | ShortStack |
| ghr-b1.1r1-15491 | Gossypium hirsutum (Upland Cotton) 1.1 | A05:13147454-13147530 | - | 584 | 0.63 | UGCCAAAGGAGAAUUGCCCUG | miR399 | MIRNA | ShortStack |
| ghr-b1.1r1-18020 | Gossypium hirsutum (Upland Cotton) 1.1 | A05:56073106-56073373 | - | 154,520 | 166.91 | UCUUACCAACCCCUCCCAUACC | miR2948 | MIRNA | ShortStack |
| ghr-b1.1r1-18469 | Gossypium hirsutum (Upland Cotton) 1.1 | A05:72066122-72066221 | - | 6,982 | 7.54 | UGAUUGAGCCGUGCCAAUAUC | miR171 | MIRNA | ShortStack |
| ghr-b1.1r1-18583 | Gossypium hirsutum (Upland Cotton) 1.1 | A05:76820020-76820095 | - | 2,104 | 2.27 | AUCAUGCUAUCCCUUCGGAUU | miR393 | MIRNA | ShortStack |
| ghr-b1.1r1-19177 | Gossypium hirsutum (Upland Cotton) 1.1 | A05:85700345-85700419 | + | 1,830 | 1.98 | GUGUUUCGCGCAUGAACGACG | | MIRNA | ShortStack |
| ghr-b1.1r1-21685 | Gossypium hirsutum (Upland Cotton) 1.1 | A06:26951165-26951258 | - | 2,066 | 2.23 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | ShortStack |
| ghr-b1.1r1-22468 | Gossypium hirsutum (Upland Cotton) 1.1 | A06:93321748-93321833 | - | 1,810 | 1.96 | UUGAGCCGUGCCAAUAUCACG | miR171 | MIRNA | ShortStack |
| ghr-b1.1r1-22999 | Gossypium hirsutum (Upland Cotton) 1.1 | A06:99294033-99294160 | - | 40,748 | 44.02 | UGAAUCUAGUUUCUCUCUUAC | | MIRNA | ShortStack |
| ghr-b1.1r1-24139 | Gossypium hirsutum (Upland Cotton) 1.1 | A07:2556325-2556469 | + | 35,059 | 37.87 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | ShortStack |
| ghr-MIR156d-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | A07:2556327-2556422 | + | 35,058 | 37.87 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-24415 | Gossypium hirsutum (Upland Cotton) 1.1 | A07:4138920-4139088 | - | 354 | 0.38 | GUUCAAUAAAGCUGUGGGAAG | miR396 | MIRNA | ShortStack |
| ghr-b1.1r1-24872 | Gossypium hirsutum (Upland Cotton) 1.1 | A07:7077249-7077370 | + | 361,505 | 390.49 | UUGACAGAAGAUAGAGAGCAC | miR156 | MIRNA | ShortStack |
| ghr-b1.1r1-25187 | Gossypium hirsutum (Upland Cotton) 1.1 | A07:9733667-9733931 | + | 7,972 | 8.61 | UUCCCAAAACCUCCAAUUCCAA | miR482 | MIRNA | ShortStack |
| ghr-b1.1r1-25460 | Gossypium hirsutum (Upland Cotton) 1.1 | A07:14210334-14210481 | + | 247,712 | 267.58 | UGACAACGAGAGAGAGCACGU | miR535 | MIRNA | ShortStack |
| ghr-b1.1r1-26294 | Gossypium hirsutum (Upland Cotton) 1.1 | A07:28328142-28328356 | - | 38,876 | 41.99 | GGAAUGUUGUCUGGCUCGAGG | miR166 | MIRNA | ShortStack |
| ghr-b1.1r1-27253 | Gossypium hirsutum (Upland Cotton) 1.1 | A07:71721342-71721451 | - | 27,652 | 29.87 | UGCCUGGCUCCCUGAAUGCCA | miR160 | MIRNA | ShortStack |
| ghr-b1.1r1-30327 | Gossypium hirsutum (Upland Cotton) 1.1 | A08:76858631-76858785 | - | 17,361 | 18.75 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | ShortStack |
| ghr-b1.1r1-30359 | Gossypium hirsutum (Upland Cotton) 1.1 | A08:79292177-79292283 | - | 72,696 | 78.53 | ACUCUCUUCCAAAGGCUUUGAG | | MIRNA | ShortStack |
| ghr-b1.1r1-30699 | Gossypium hirsutum (Upland Cotton) 1.1 | A08:86586957-86587125 | - | 197,522 | 213.36 | UCGCUUGGUGCAGGUCGGGAA | miR168 | MIRNA | ShortStack |
| ghr-b1.1r1-32811 | Gossypium hirsutum (Upland Cotton) 1.1 | A09:2948471-2948690 | - | 6,755 | 7.30 | CAGCCAAGGAUGACUUGCCGA | miR169 | MIRNA | ShortStack |
| ghr-b1.1r1-33020 | Gossypium hirsutum (Upland Cotton) 1.1 | A09:6431158-6431244 | + | 2,080 | 2.25 | CAUGUUUUUCCUGUUCAUCUUC | miR8722 | MIRNA | ShortStack |
| ghr-b1.1r1-33047 | Gossypium hirsutum (Upland Cotton) 1.1 | A09:6683734-6683846 | - | 15,440 | 16.68 | UCUGUCGCAGGGGAGAUGGCUG | miR3267 | MIRNA | ShortStack |
| ghr-b1.1r1-33055 | Gossypium hirsutum (Upland Cotton) 1.1 | A09:6827096-6827185 | - | 3,826 | 4.13 | UUGUCGCAGGAGAGAUGGCACU | miR3627 | MIRNA | ShortStack |
| ghr-b1.1r1-33505 | Gossypium hirsutum (Upland Cotton) 1.1 | A09:39148681-39148908 | + | 681,664 | 736.33 | UUGACAGAAGAUAGAGAGCAC | miR156 | MIRNA | ShortStack |
| ghr-b1.1r1-35412 | Gossypium hirsutum (Upland Cotton) 1.1 | A09:67611527-67611594 | + | 530 | 0.57 | UAAUCUGCAUCCUGAGGUUUA | miR2111 | MIRNA | ShortStack |
| ghr-b1.1r1-36740 | Gossypium hirsutum (Upland Cotton) 1.1 | A10:1902590-1902653 | - | 2,518 | 2.72 | UUGAGUGCAGCGUUGAUGAGC | miR397 | MIRNA | ShortStack |
| ghr-MIR399e-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | A10:3001079-3001235 | + | 35 | 0.04 | UGCCAAAGGAGAUUUGCCCCG | miR399 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-37536 | Gossypium hirsutum (Upland Cotton) 1.1 | A10:10279350-10279431 | - | 1,128 | 1.22 | UGAUUGAGUCGUGCCAAUAUC | miR171 | MIRNA | ShortStack |
| ghr-MIR827b-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | A10:93766272-93766463 | + | 10,535 | 11.38 | UUUGUUUAUGGUCAUCUAAGC | miR827 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-39984 | Gossypium hirsutum (Upland Cotton) 1.1 | A10:93766303-93766433 | + | 10,534 | 11.38 | UUUGUUUAUGGUCAUCUAAGC | miR827 | MIRNA | ShortStack |
| ghr-b1.1r1-40388 | Gossypium hirsutum (Upland Cotton) 1.1 | A10:97554253-97554384 | + | 14,410 | 15.57 | AGAAUCUUGAUGAUGCUGCAG | miR172 | MIRNA | ShortStack |
| ghr-MIR172-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | A10:97556994-97557118 | + | 57,522 | 62.14 | AGAAUCCUGAUGAUGCUGCAG | miR172 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-41599 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:4864223-4864339 | - | 506 | 0.55 | CUCGCAAUGCAGAAUACAACA | | MIRNA | ShortStack |
| ghr-b1.1r1-42300 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:10812683-10812773 | - | 1,008 | 1.09 | UUAGAUUCACGCACAAACUCG | miR403 | MIRNA | ShortStack |
| ghr-MIR167b-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:13865497-13865602 | + | 1,374 | 1.48 | UGAAGCUGCCAGCAUGAUCUAA | miR167 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-42831 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:17153477-17153588 | - | 162,354 | 175.37 | UGACAAUGAGAGAGAGCACGC | miR535 | MIRNA | ShortStack |
| ghr-b1.1r1-43683 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:28462685-28462753 | - | 3,893 | 4.21 | UUCCAUCUCUUGCACACUGGA | miR2950 | MIRNA | ShortStack |
| ghr-b1.1r1-44490 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:71855467-71855624 | + | 2,841 | 3.07 | GGCAGGUUGUCUUUGGCUACA | miR169 | MIRNA | ShortStack |
| ghr-b1.1r1-44655 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:77351625-77351805 | - | 199,914 | 215.95 | UGAAGCUGCCAGCAUGAUCUA | miR167 | MIRNA | ShortStack |
| ghr-b1.1r1-46278 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:92377838-92378047 | + | 49,668 | 53.65 | UUUGUACUUUAGAUGUCUCUU | | MIRNA | ShortStack |
| ghr-b1.1r1-46281 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:92390413-92390499 | + | 3,797 | 4.10 | AAGAAGUCGGGAGAGAGUUUU | miR7508 | MIRNA | ShortStack |
| ghr-b1.1r1-46486 | Gossypium hirsutum (Upland Cotton) 1.1 | A12:267690-267787 | - | 69,785 | 75.38 | UGAAGCUGCCAGCAUGAUCUA | miR167 | MIRNA | ShortStack |
| ghr-b1.1r1-47051 | Gossypium hirsutum (Upland Cotton) 1.1 | A12:6063648-6063865 | - | 4,589 | 4.96 | ACAAGGAAGCAUGUGGUCUAGCAG | | MIRNA | ShortStack |
| ghr-b1.1r1-47435 | Gossypium hirsutum (Upland Cotton) 1.1 | A12:12304818-12305045 | + | 22,436 | 24.24 | UUCCCGAGGCCACCCAUUCCAG | | MIRNA | ShortStack |
| ghr-b1.1r1-48484 | Gossypium hirsutum (Upland Cotton) 1.1 | A12:63584558-63584638 | + | 702 | 0.76 | AGUUCCUUCAAAUUCUUCAAC | | MIRNA | ShortStack |
| ghr-b1.1r1-48814 | Gossypium hirsutum (Upland Cotton) 1.1 | A12:66624479-66624621 | - | 949,484 | 1,025.62 | UUCCACAGCUUUCUUGAACUU | miR396 | MIRNA | ShortStack |
| ghr-b1.1r1-50256 | Gossypium hirsutum (Upland Cotton) 1.1 | A12:82504184-82504292 | + | 1,646 | 1.78 | UCCAGAAGCAGAGUUAGGACA | | MIRNA | ShortStack |
| ghr-b1.1r1-50462 | Gossypium hirsutum (Upland Cotton) 1.1 | A12:84153234-84153317 | + | 59,595 | 64.37 | ACUCUCCCUCAAGGGCUUCUG | miR477 | MIRNA | ShortStack |
| ghr-b1.1r1-50607 | Gossypium hirsutum (Upland Cotton) 1.1 | A12:85136284-85136394 | + | 23,463 | 25.34 | CGUGAUAUUGGUUCGGCUCAUC | miR479 | MIRNA | ShortStack |
| ghr-MIR479-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | A12:85136309-85136405 | + | 23,457 | 25.34 | CGUGAUAUUGGUUCGGCUCAUC | miR479 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-50738 | Gossypium hirsutum (Upland Cotton) 1.1 | A12:85828099-85828296 | + | 7,312 | 7.90 | UCCAAAGGGAUCGCAUUGAUUU | miR393 | MIRNA | ShortStack |
| ghr-MIR393-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | A12:85828164-85828302 | + | 7,305 | 7.89 | UCCAAAGGGAUCGCAUUGAUUU | miR393 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-51248 | Gossypium hirsutum (Upland Cotton) 1.1 | A13:1265736-1265931 | - | 71,952 | 77.72 | GAUUUGGGGCAAAGACGGGAU | | MIRNA | ShortStack |
| ghr-b1.1r1-51423 | Gossypium hirsutum (Upland Cotton) 1.1 | A13:1957508-1957661 | + | 22,407 | 24.20 | AGAAUCUUGAUGAUGCUGCAG | miR172 | MIRNA | ShortStack |
| ghr-b1.1r1-52401 | Gossypium hirsutum (Upland Cotton) 1.1 | A13:16441837-16441949 | - | 7,976 | 8.62 | GUUCCCUAGAUCACUUCACUG | | MIRNA | ShortStack |
| ghr-b1.1r1-52402 | Gossypium hirsutum (Upland Cotton) 1.1 | A13:16893078-16893212 | - | 4,702 | 5.08 | GUUCCCCUGAUCACUUCACUG | miR395 | MIRNA | ShortStack |
| ghr-b1.1r1-52439 | Gossypium hirsutum (Upland Cotton) 1.1 | A13:18991152-18991254 | + | 680 | 0.74 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | ShortStack |
| ghr-b1.1r1-52442 | Gossypium hirsutum (Upland Cotton) 1.1 | A13:19650157-19650281 | + | 3,490 | 3.77 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | ShortStack |
| ghr-b1.1r1-52917 | Gossypium hirsutum (Upland Cotton) 1.1 | A13:51565160-51565418 | + | 910 | 0.98 | UAGGUACUUGCAAGCUCACGGGAG | | MIRNA | ShortStack |
| ghr-b1.1r1-53063 | Gossypium hirsutum (Upland Cotton) 1.1 | A13:58816595-58816814 | - | 7,007 | 7.57 | UUUUUCCAUGUCACAAAGAUGC | | MIRNA | ShortStack |
| ghr-b1.1r1-54122 | Gossypium hirsutum (Upland Cotton) 1.1 | A13:74712725-74712823 | - | 389,401 | 420.63 | UUGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | ShortStack |
| ghr-b1.1r1-54202 | Gossypium hirsutum (Upland Cotton) 1.1 | A13:75071101-75071243 | - | 225,934 | 244.05 | UGACAGAAGAGAGUGAGCACU | miR156 | MIRNA | ShortStack |
| ghr-MIR396a-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | A13:76748901-76749036 | - | 2,539 | 2.74 | UUCCACAGCUUUCUUGAACUG | miR396 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-55073 | Gossypium hirsutum (Upland Cotton) 1.1 | A13:79718288-79718407 | + | 855 | 0.92 | UGCAUUUGCACCUGCACCUUA | miR530 | MIRNA | ShortStack |
| ghr-b1.1r1-55907 | Gossypium hirsutum (Upland Cotton) 1.1 | D01:4835033-4835131 | - | 4,592 | 4.96 | UAGUGAGGAUGGGAAAUUUGU | miR8646 | MIRNA | ShortStack |
| ghr-b1.1r1-56642 | Gossypium hirsutum (Upland Cotton) 1.1 | D01:12428991-12429105 | - | 7,136 | 7.71 | UCGCUUCCCUAAUUUGGACGA | miR8753 | MIRNA | ShortStack |
| ghr-b1.1r1-58817 | Gossypium hirsutum (Upland Cotton) 1.1 | D01:58155507-58155750 | - | 4,959 | 5.36 | AGCACACGGUGCUAUGGUCGCUAA | | MIRNA | ShortStack |
| ghr-b1.1r1-59347 | Gossypium hirsutum (Upland Cotton) 1.1 | D01:60396698-60396779 | - | 1,490 | 1.61 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | ShortStack |
| ghr-b1.1r1-59682 | Gossypium hirsutum (Upland Cotton) 1.1 | D01:61400124-61400302 | + | 46,822 | 50.58 | CGCUAUCCAUCCUGAGUUUCA | miR390 | MIRNA | ShortStack |
| ghr-MIR390b-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D01:61400184-61400315 | + | 46,815 | 50.57 | CGCUAUCCAUCCUGAGUUUCA | miR390 | MIRNA | miRBase21-BestBlastHit |
| ghr-MIR390a-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D01:61400187-61400310 | + | 46,815 | 50.57 | CGCUAUCCAUCCUGAGUUUCA | miR390 | MIRNA | miRBase21-BestBlastHit |
| ghr-MIR390c-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D01:61400191-61400304 | + | 46,815 | 50.57 | CGCUAUCCAUCCUGAGUUUCA | miR390 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-60099 | Gossypium hirsutum (Upland Cotton) 1.1 | D02:1991978-1992086 | + | 68,084 | 73.54 | UGUGUUCUCAGGUCGCCCCUG | miR398 | MIRNA | ShortStack |
| ghr-b1.1r1-60101 | Gossypium hirsutum (Upland Cotton) 1.1 | D02:1994432-1994531 | + | 934 | 1.01 | UGUGUUCUCAGGUCGCCCCUG | miR398 | MIRNA | ShortStack |
| ghr-b1.1r1-60654 | Gossypium hirsutum (Upland Cotton) 1.1 | D02:5269718-5269882 | - | 1,656,318 | 1,789.14 | UUGGACAGAGUAAUCACGGUCG | | MIRNA | ShortStack |
| ghr-b1.1r1-61230 | Gossypium hirsutum (Upland Cotton) 1.1 | D02:8748758-8748889 | - | 87,241 | 94.24 | UUCCACAGCUUUCUUGAACUG | miR396 | MIRNA | ShortStack |
| ghr-b1.1r1-63518 | Gossypium hirsutum (Upland Cotton) 1.1 | D02:59901581-59901823 | + | 73,664 | 79.57 | UUUCCUAUGCCCCCCAUUCCAC | miR482 | MIRNA | ShortStack |
| ghr-b1.1r1-63867 | Gossypium hirsutum (Upland Cotton) 1.1 | D02:62956797-62956912 | - | 8,730 | 9.43 | UGAAGUCCUUAGGGGGGGUGG | | MIRNA | ShortStack |
| ghr-b1.1r1-63870 | Gossypium hirsutum (Upland Cotton) 1.1 | D02:62961678-62961777 | - | 1,504 | 1.63 | ACUCUCCCUCAAGGGCUUCCCC | miR477 | MIRNA | ShortStack |
| ghr-b1.1r1-66527 | Gossypium hirsutum (Upland Cotton) 1.1 | D03:26683276-26683413 | - | 14,236 | 15.38 | GGAAUGUUGUCUGGCUCGAGG | miR166 | MIRNA | ShortStack |
| ghr-MIR162a-m2 | Gossypium hirsutum (Upland Cotton) 1.1 | D03:32606499-32606629 | - | 136,198 | 147.12 | UCGAUAAACCUCUGCAUCCAG | miR162 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-66858 | Gossypium hirsutum (Upland Cotton) 1.1 | D03:32606511-32606631 | - | 136,198 | 147.12 | UCGAUAAACCUCUGCAUCCAG | miR162 | MIRNA | ShortStack |
| ghr-b1.1r1-67728 | Gossypium hirsutum (Upland Cotton) 1.1 | D03:41357536-41357651 | - | 186,328 | 201.27 | AGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | ShortStack |
| ghr-MIR3476-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D03:45679804-45679918 | - | 183,029 | 197.71 | UGAACUGGGUUUGUUGGCUGC | miR3476 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-68613 | Gossypium hirsutum (Upland Cotton) 1.1 | D03:45679811-45680002 | - | 183,039 | 197.72 | UGAACUGGGUUUGUUGGCUGC | miR3476 | MIRNA | ShortStack |
| ghr-MIR2949a-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D03:45731762-45731875 | + | 125,651 | 135.73 | ACUUUUGAACUGGAUUUGCCGA | miR2949 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-68628 | Gossypium hirsutum (Upland Cotton) 1.1 | D03:45731775-45731863 | + | 125,651 | 135.73 | ACUUUUGAACUGGAUUUGCCGA | miR2949 | MIRNA | ShortStack |
| ghr-b1.1r1-69746 | Gossypium hirsutum (Upland Cotton) 1.1 | D04:5120042-5120124 | - | 13,404 | 14.48 | GUGUUUCGCGCGUGGACGACG | | MIRNA | ShortStack |
| ghr-b1.1r1-70422 | Gossypium hirsutum (Upland Cotton) 1.1 | D04:11618168-11618239 | + | 2,805 | 3.03 | AUCAUGCUAUCCCUUCGGAUU | miR393 | MIRNA | ShortStack |
| ghr-b1.1r1-71820 | Gossypium hirsutum (Upland Cotton) 1.1 | D04:44104821-44105083 | - | 62,252 | 67.24 | UCUUUCCUACUCCUCCCAUUCC | miR482 | MIRNA | ShortStack |
| ghr-b1.1r1-72960 | Gossypium hirsutum (Upland Cotton) 1.1 | D04:50420913-50421147 | - | 247,609 | 267.47 | UCGGACCAGGCUUCAUUCCUC | miR166 | MIRNA | ShortStack |
| ghr-b1.1r1-73124 | Gossypium hirsutum (Upland Cotton) 1.1 | D04:51359960-51360252 | - | 4,986 | 5.39 | CAGCCAAGGAUGACUUGCCGG | miR169 | MIRNA | ShortStack |
| ghr-MIR156b-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D05:3389927-3390039 | - | 1,071,543 | 1,157.47 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| ghr-MIR156a-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D05:3389942-3390045 | - | 1,071,543 | 1,157.47 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| ghr-MIR156c-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D05:3389943-3390039 | - | 1,071,543 | 1,157.47 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-73644 | Gossypium hirsutum (Upland Cotton) 1.1 | D05:3389946-3390045 | - | 1,071,543 | 1,157.47 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | ShortStack |
| ghr-b1.1r1-73852 | Gossypium hirsutum (Upland Cotton) 1.1 | D05:4838427-4838517 | + | 908,120 | 980.94 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | ShortStack |
| ghr-b1.1r1-75132 | Gossypium hirsutum (Upland Cotton) 1.1 | D05:14353141-14353222 | - | 8,544 | 9.23 | UCAUUGAGUGCAGCGUUGAUG | miR397 | MIRNA | ShortStack |
| ghr-b1.1r1-78043 | Gossypium hirsutum (Upland Cotton) 1.1 | D05:43103318-43103600 | - | 215,136 | 232.39 | UCUUACCAACCCCUCCCAUACC | miR2948 | MIRNA | ShortStack |
| ghr-MIR2948-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D05:43103335-43103486 | - | 215,069 | 232.32 | UCUUACCAACCCCUCCCAUACC | miR2948 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-81702 | Gossypium hirsutum (Upland Cotton) 1.1 | D06:17478024-17478118 | - | 2,123 | 2.29 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | ShortStack |
| ghr-MIR7505-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D06:18911870-18911977 | + | 67,769 | 73.20 | UUCAGAAACCAUCCCUUCCUU | miR7505 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-82475 | Gossypium hirsutum (Upland Cotton) 1.1 | D06:42103826-42103945 | + | 8,038 | 8.68 | UGUCCUGCAAACUCACAAACC | | MIRNA | ShortStack |
| ghr-MIR7513-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D06:58525696-58525796 | + | 22,193 | 23.97 | AAUCAGCCAGGAAUCGUUUGA | miR7513 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-83348 | Gossypium hirsutum (Upland Cotton) 1.1 | D06:58525706-58525793 | + | 22,192 | 23.97 | AAUCAGCCAGGAAUCGUUUGA | miR7513 | MIRNA | ShortStack |
| ghr-b1.1r1-83583 | Gossypium hirsutum (Upland Cotton) 1.1 | D06:59936686-59936923 | - | 29,501 | 31.87 | AAUGAAUCUAGGUUCUCUCUU | miR8677 | MIRNA | ShortStack |
| ghr-b1.1r1-85084 | Gossypium hirsutum (Upland Cotton) 1.1 | D07:2765602-2765799 | + | 106,888 | 115.46 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | ShortStack |
| ghr-b1.1r1-85947 | Gossypium hirsutum (Upland Cotton) 1.1 | D07:6887496-6887624 | + | 1,163,142 | 1,256.41 | UUGACAGAAGAUAGAGAGCAC | miR156 | MIRNA | ShortStack |
| ghr-b1.1r1-86621 | Gossypium hirsutum (Upland Cotton) 1.1 | D07:11516294-11516383 | + | 25,844 | 27.92 | UGACAACGAGAGAGAGCACGU | miR535 | MIRNA | ShortStack |
| ghr-b1.1r1-88864 | Gossypium hirsutum (Upland Cotton) 1.1 | D07:48844697-48844797 | - | 16,834 | 18.18 | UGCCUGGCUCCCUGAAUGCCA | miR160 | MIRNA | ShortStack |
| ghr-b1.1r1-89289 | Gossypium hirsutum (Upland Cotton) 1.1 | D07:51361616-51361691 | + | 1,660,724 | 1,793.90 | UGAAGCUGCCAGCAUGAUCUUA | miR167 | MIRNA | ShortStack |
| ghr-b1.1r1-91456 | Gossypium hirsutum (Upland Cotton) 1.1 | D08:8445993-8446103 | + | 23,890 | 25.81 | UUCGGACCAGGCUUCAUUCCC | miR166 | MIRNA | ShortStack |
| ghr-b1.1r1-92320 | Gossypium hirsutum (Upland Cotton) 1.1 | D08:34332674-34332757 | + | 8,376 | 9.05 | UUGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | ShortStack |
| ghr-b1.1r1-92535 | Gossypium hirsutum (Upland Cotton) 1.1 | D08:39490819-39491054 | - | 14,189 | 15.33 | GGAAGGUUUGGAGGAGAUUGA | | MIRNA | ShortStack |
| ghr-b1.1r1-92812 | Gossypium hirsutum (Upland Cotton) 1.1 | D08:46181500-46181595 | - | 13,294 | 14.36 | ACUCUCUUCCAAAGGCUUCAAG | miR477 | MIRNA | ShortStack |
| ghr-b1.1r1-92841 | Gossypium hirsutum (Upland Cotton) 1.1 | D08:46537574-46537760 | - | 290,300 | 313.58 | UUUGCAUGAACUAGGAGACGU | | MIRNA | ShortStack |
| ghr-b1.1r1-93267 | Gossypium hirsutum (Upland Cotton) 1.1 | D08:51343496-51343689 | - | 189,704 | 204.92 | UCGCUUGGUGCAGGUCGGGAA | miR168 | MIRNA | ShortStack |
| ghr-b1.1r1-94085 | Gossypium hirsutum (Upland Cotton) 1.1 | D08:58857512-58857654 | - | 121,224 | 130.95 | UCGGACCAGGCUUCAUUUCCC | miR166 | MIRNA | ShortStack |
| ghr-b1.1r1-95094 | Gossypium hirsutum (Upland Cotton) 1.1 | D08:64627107-64627231 | - | 4,158 | 4.49 | UUCCACAGCUUUCUUGAACUU | miR396 | MIRNA | ShortStack |
| ghr-b1.1r1-95886 | Gossypium hirsutum (Upland Cotton) 1.1 | D09:6289750-6290003 | - | 7,849 | 8.48 | UUGUGAUAUUAGUGAGGAACA | | MIRNA | ShortStack |
| ghr-b1.1r1-95887 | Gossypium hirsutum (Upland Cotton) 1.1 | D09:6316908-6317025 | - | 6,002 | 6.48 | UUGUGAUGUUUGUGAGGAACA | | MIRNA | ShortStack |
| ghr-b1.1r1-95900 | Gossypium hirsutum (Upland Cotton) 1.1 | D09:6454410-6454496 | + | 2,124 | 2.29 | CAUGUUUUUCCUGUUCAUCUUC | miR8722 | MIRNA | ShortStack |
| ghr-b1.1r1-95924 | Gossypium hirsutum (Upland Cotton) 1.1 | D09:6657290-6657379 | - | 12,110 | 13.08 | UCUGUCGCAGGGGAGAUGGCUG | miR3267 | MIRNA | ShortStack |
| ghr-b1.1r1-95927 | Gossypium hirsutum (Upland Cotton) 1.1 | D09:6730376-6730464 | - | 15,072 | 16.28 | UUGUCGCAGGAGAGAUGGCACU | miR3627 | MIRNA | ShortStack |
| ghr-b1.1r1-96554 | Gossypium hirsutum (Upland Cotton) 1.1 | D09:24080716-24080939 | + | 3,645,514 | 3,937.85 | UUGACAGAAGAUAGAGAGCAC | miR156 | MIRNA | ShortStack |
| ghr-b1.1r1-98310 | Gossypium hirsutum (Upland Cotton) 1.1 | D09:39105535-39105656 | - | 1,627 | 1.76 | AAGGACUGAAAGGAGUGAGGA | | MIRNA | ShortStack |
| ghr-b1.1r1-99009 | Gossypium hirsutum (Upland Cotton) 1.1 | D09:43446217-43446299 | + | 48,236 | 52.10 | AAGCUCAGGAGGGAUAGCGCC | miR390 | MIRNA | ShortStack |
| ghr-b1.1r1-100015 | Gossypium hirsutum (Upland Cotton) 1.1 | D09:48782210-48782386 | - | 556,034 | 600.62 | UUGGACAGAGUAAUCACGGUCG | | MIRNA | ShortStack |
| ghr-b1.1r1-103533 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:34003211-34003311 | + | 72,249 | 78.04 | UGAAGCUGCCAGCAUGAUCUU | miR167 | MIRNA | ShortStack |
| ghr-b1.1r1-103606 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:39204482-39204570 | - | 16,418 | 17.74 | UCGGACUAGGCUUCAUUCCCC | miR166 | MIRNA | ShortStack |
| ghr-b1.1r1-104296 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:52703220-52703302 | + | 425 | 0.46 | CAUUGUGAAUGUGUGUUCGAA | | MIRNA | ShortStack |
| ghr-MIR827a-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:57298515-57298669 | + | 12,420 | 13.42 | UUUGUUUAUGGUCAUCUAAGC | miR827 | MIRNA | miRBase21-BestBlastHit |
| ghr-MIR827c-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:57298515-57298669 | + | 12,420 | 13.42 | UUUGUUUAUGGUCAUCUAAGC | miR827 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-104778 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:57298527-57298653 | + | 12,420 | 13.42 | UUUGUUUAUGGUCAUCUAAGC | miR827 | MIRNA | ShortStack |
| ghr-b1.1r1-105309 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:61062411-61062544 | + | 2,529 | 2.73 | UUUUUGAGAAUCUUGAUGAU | miR172 | MIRNA | ShortStack |
| ghr-b1.1r1-105313 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:61068472-61068604 | + | 78,880 | 85.21 | AGAAUCCUGAUGAUGCUGCAG | miR172 | MIRNA | ShortStack |
| ghr-MIR172-m2 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:61068489-61068613 | + | 78,879 | 85.20 | AGAAUCCUGAUGAUGCUGCAG | miR172 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-105692 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:63312628-63312830 | - | 941 | 1.02 | UGGCACGCUGGCUCUCGACAGAAC | | MIRNA | ShortStack |
| ghr-b1.1r1-106084 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:1953704-1953864 | + | 9,187 | 9.92 | ACUCUCCCUCAAGGGCUUCCUG | miR477 | MIRNA | ShortStack |
| ghr-b1.1r1-106837 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:6236404-6236487 | - | 2,583 | 2.79 | UGUCGCAGGAGCGAUGGCACUG | miR5211 | MIRNA | ShortStack |
| ghr-b1.1r1-107607 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:11078351-11078462 | + | 91,230 | 98.55 | UGGAGAAGCAGGGCACGUGCA | miR164 | MIRNA | ShortStack |
| ghr-b1.1r1-108124 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:14789918-14790007 | - | 145,269 | 156.92 | UGACAAUGAGAGAGAGCACGC | miR535 | MIRNA | ShortStack |
| ghr-b1.1r1-109024 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:22891952-22892020 | - | 35,652 | 38.51 | UGGUGUGCAGGGGGUGGAAUA | miR2950 | MIRNA | ShortStack |
| ghr-b1.1r1-109468 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:30569962-30570078 | + | 1,609 | 1.74 | UUCCAUGUCACAGAGAUGUUG | miR8768 | MIRNA | ShortStack |
| ghr-b1.1r1-109633 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:34669413-34669496 | + | 7,909 | 8.54 | AGGGUGUAAGAACGGCAGUAG | | MIRNA | ShortStack |
| ghr-b1.1r1-110064 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:47702273-47702416 | + | 76,882 | 83.05 | UCUCGGACCAGGCUUCAUUCC | miR166 | MIRNA | ShortStack |
| ghr-b1.1r1-110196 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:50124449-50124560 | + | 742 | 0.80 | GGCAGGUUGUCUUUGGCUACA | miR169 | MIRNA | ShortStack |
| ghr-b1.1r1-111911 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:65310860-65311105 | + | 64,861 | 70.06 | UUUGUACUUUAGAUGUCUCUC | | MIRNA | ShortStack |
| ghr-MIR7495a-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:65310928-65311100 | + | 64,839 | 70.04 | UUUGUACUUUAGAUGUCUCUC | | MIRNA | miRBase21-BestBlastHit |
| ghr-MIR7508-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:65348411-65348520 | + | 232,120 | 250.73 | CAAGAAAAGAAGUCGGGAGAG | miR7508 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-111923 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:65351058-65351333 | + | 34,366 | 37.12 | AUGUCACUCUCUCAUGCUGUU | | MIRNA | ShortStack |
| ghr-b1.1r1-111932 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:65399476-65399660 | + | 97,489 | 105.31 | UUACUUUAGAUGUCUCCUUCA | miR7495 | MIRNA | ShortStack |
| ghr-MIR7495b-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:65399492-65399622 | + | 97,485 | 105.30 | UUACUUUAGAUGUCUCCUUCA | miR7495 | MIRNA | miRBase21-BestBlastHit |
| ghr-MIR167a-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D12:319386-319490 | - | 7,091 | 7.66 | UGAAGCUGCCAGCAUGAUCUA | miR167 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-112156 | Gossypium hirsutum (Upland Cotton) 1.1 | D12:319389-319485 | - | 7,091 | 7.66 | UGAAGCUGCCAGCAUGAUCUA | miR167 | MIRNA | ShortStack |
| ghr-b1.1r1-113270 | Gossypium hirsutum (Upland Cotton) 1.1 | D12:9406034-9406148 | - | 634 | 0.69 | AAAAAGCUGUGUUCUAUAAGCAAG | | MIRNA | ShortStack |
| ghr-b1.1r1-113278 | Gossypium hirsutum (Upland Cotton) 1.1 | D12:9457899-9458113 | + | 40,009 | 43.22 | UUCCCGAGGCCACCCAUUCCAG | | MIRNA | ShortStack |
| ghr-b1.1r1-114951 | Gossypium hirsutum (Upland Cotton) 1.1 | D12:40446594-40446701 | - | 14,077 | 15.21 | UUAGAUUCACGCACAAACUCG | miR403 | MIRNA | ShortStack |
| ghr-b1.1r1-114972 | Gossypium hirsutum (Upland Cotton) 1.1 | D12:40606050-40606186 | - | 1,258 | 1.36 | CUAAGGCUGCGUUCUUCAUUGCU | | MIRNA | ShortStack |
| ghr-b1.1r1-117126 | Gossypium hirsutum (Upland Cotton) 1.1 | D12:56245117-56245203 | + | 2,756 | 2.98 | ACUCUCCCUCAAGGGCUUCUG | miR477 | MIRNA | ShortStack |
| ghr-b1.1r1-117385 | Gossypium hirsutum (Upland Cotton) 1.1 | D12:57561628-57561793 | + | 4,938 | 5.33 | AUCAUGCGAUCCCUUCGGAAU | miR393 | MIRNA | ShortStack |
| ghr-b1.1r1-118144 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:1792265-1792411 | + | 9,693 | 10.47 | AGAAUCUUGAUGAUGCUGCAG | miR172 | MIRNA | ShortStack |
| ghr-b1.1r1-119454 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:12886990-12887072 | - | 260 | 0.28 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | ShortStack |
| ghr-MIR169b-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:13731913-13732122 | + | 2,256 | 2.44 | CAGCCAAGGAUGAUUUGCCGG | miR169 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-119790 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:22379938-22380074 | - | 548 | 0.59 | UAAUCUGCAUCCUGAGGUUUG | miR2111 | MIRNA | ShortStack |
| ghr-b1.1r1-120010 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:31689579-31689755 | - | 113,826 | 122.95 | UGAAGCUGCCAGCAUGAUCUA | miR167 | MIRNA | ShortStack |
| ghr-b1.1r1-120113 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:34219135-34219199 | - | 934 | 1.01 | ACAGGUGGUGGAUCAAAUAUGAGU | miR9560 | MIRNA | ShortStack |
| ghr-b1.1r1-120157 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:34666660-34666817 | + | 1,900 | 2.05 | UCUUUCCAAUUCCUCCCAUUCC | miR482 | MIRNA | ShortStack |
| ghr-b1.1r1-121924 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:55199796-55199884 | - | 19,476 | 21.04 | UGACAGAAGAGAGUGAGCACU | miR156 | MIRNA | ShortStack |
| ghr-MIR396b-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:56910755-56910889 | - | 7,432 | 8.03 | GUUCAAUAAAGCUGUGGGAAG | miR396 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-122928 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:59886029-59886118 | - | 4,879 | 5.27 | UGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | ShortStack |
| ghr-b1.1r1-123026 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:60304739-60304860 | + | 1,079 | 1.17 | UGCAUUUGCACCUGCACCUUA | miR530 | MIRNA | ShortStack |
| ghr-b1.1r1-123126 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold101044:1-166 | + | 1,818 | 1.96 | AAUGGAGGAGUUGGAAAGAUU | miR482 | MIRNA | ShortStack |
| ghr-MIR399e-m2 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold122906:46-202 | - | 54 | 0.06 | UGCCAAAGGAGAUUUGCCCCG | miR399 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-125989 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold13534:2110-2198 | + | 3,787 | 4.09 | AAGAAGUCGGGAGAGAGUUUU | miR7508 | MIRNA | ShortStack |
| ghr-b1.1r1-127738 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold1915_A07:3888-4030 | - | 48,703 | 52.61 | UUCCACAGCUUUCUUGAACUU | miR396 | MIRNA | ShortStack |
| ghr-b1.1r1-128065 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold1930_A08:2084-2303 | + | 13,447 | 14.53 | CGCUAUCUAUCCUGAGUUUCA | miR390 | MIRNA | ShortStack |
| ghr-b1.1r1-128103 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold1935_A08:35871-35965 | + | 383,589 | 414.35 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | ShortStack |
| ghr-b1.1r1-128359 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold2012_A08:1397550-1397628 | + | 1,624 | 1.75 | UGGAAGGUUUGGAGGAGAAUGA | | MIRNA | ShortStack |
| ghr-b1.1r1-128360 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold2012_A08:1397708-1397872 | + | 849 | 0.92 | GGAAGGUUUGGAGGAGAGUGA | | MIRNA | ShortStack |
| ghr-b1.1r1-128483 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold2080_A08:10490-10577 | - | 8,172 | 8.83 | UUGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | ShortStack |
| ghr-b1.1r1-129071 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold2277_A09:64155-64298 | + | 44,210 | 47.76 | UGAAGCUGCCAGCAUGAUCUU | miR167 | MIRNA | ShortStack |
| ghr-b1.1r1-129389 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold2301_A09:63327-63409 | + | 49,976 | 53.98 | AAGCUCAGGAGGGAUAGCGCC | miR390 | MIRNA | ShortStack |
| ghr-b1.1r1-129981 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold2439_A09:74405-74562 | + | 5,453 | 5.89 | UUGUGAUAUUAGUGAGGAACA | | MIRNA | ShortStack |
| ghr-b1.1r1-129982 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold2439_A09:76216-76304 | + | 1,888 | 2.04 | UUUUUCACAAAUAUCACAAUA | | MIRNA | ShortStack |
| ghr-b1.1r1-130078 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold2451_A10:36649-36730 | - | 14,442 | 15.60 | CAUGUGCCUUGGCUCUCCAUC | miR164 | MIRNA | ShortStack |
| ghr-b1.1r1-130876 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold2735_A11:103891-103986 | + | 846 | 0.91 | UGUCGCAGGAGGGUUGACACUG | | MIRNA | ShortStack |
| ghr-b1.1r1-131061 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold2775_A11:138770-138871 | + | 10,914 | 11.79 | AGGGUGUAAGAACGGCAGUAG | | MIRNA | ShortStack |
| ghr-b1.1r1-131348 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold29393:740-850 | - | 19,820 | 21.41 | UGACAGAAGAGAGUGAGCACU | miR156 | MIRNA | ShortStack |
| ghr-b1.1r1-132385 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold3409_A12:99062-99339 | - | 262,150 | 283.17 | UUUGGAUUGAAGGGAGCUCUA | miR159 | MIRNA | ShortStack |
| ghr-b1.1r1-132398 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold3409_A12:136813-136944 | + | 4,979,590 | 5,378.90 | UUGACAGAAGAUAGAGAGCAC | miR156 | MIRNA | ShortStack |
| ghr-b1.1r1-132586 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold3445_A13:10334-10416 | - | 8,499 | 9.18 | CUGAAGUGUUUGGGGGAACUU | miR395 | MIRNA | ShortStack |
| ghr-b1.1r1-132939 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold36881:291-382 | + | 1,082 | 1.17 | AAUCUAGUAUCUCUCUUGCUC | | MIRNA | ShortStack |
| ghr-MIR482b-m1 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold3700_A13:134436-134612 | + | 141,837 | 153.21 | UCUUGCCUACUCCACCCAUGCC | miR482 | MIRNA | miRBase21-BestBlastHit |
| ghr-b1.1r1-133979 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold3936_D03:21175-21278 | - | 2,519 | 2.72 | UCGGACUGGAUUUGUUGACAA | miR3476 | MIRNA | ShortStack |
| ghr-b1.1r1-136215 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold4374_D09:71153-71263 | + | 2,465 | 2.66 | UCCAAAGGGAUCGCAUUGAUUU | miR393 | MIRNA | ShortStack |
| ghr-b1.1r1-136702 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold4480_D10:14066-14149 | + | 14,394 | 15.55 | CAUGUGCCUUGGCUCUCCAUC | miR164 | MIRNA | ShortStack |
| ghr-b1.1r1-137260 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold4574_D12:134868-135023 | + | 1,191 | 1.29 | GGGGGCAGAGAAGGGGAUAGAG | | MIRNA | ShortStack |
| ghr-b1.1r1-138652 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold4934:31817-31908 | + | 3,601 | 3.89 | UUAGAUUCACGCACAAACUCG | miR403 | MIRNA | ShortStack |
| ghr-b1.1r1-138672 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold4938:28467-28555 | + | 2,524 | 2.73 | UGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | ShortStack |
| ghr-b1.1r1-139308 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold511_A03:168952-169022 | + | 3,111 | 3.36 | AAGCUCAGGAGGGAUAGCGCC | miR390 | MIRNA | ShortStack |
| ghr-b1.1r1-141066 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold7264:5478-5542 | - | 896 | 0.97 | ACAGGUGGUGGAUCAAAUAUGAGU | miR9560 | MIRNA | ShortStack |
| ghr-b1.1r1-141164 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold732_A03:7989-8100 | + | 22,713 | 24.53 | CGAAGUCCUUAGGGGGGGUGC | | MIRNA | ShortStack |
| ghr-b1.1r1-141166 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold732_A03:13007-13097 | + | 3,308 | 3.57 | UGAAGUCCUUAGGGGGAGUGG | | MIRNA | ShortStack |
| ghr-b1.1r1-142356 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold96626:327-482 | + | 1,287 | 1.39 | GGGGGCAGAGAAGGGGAUAGAG | | MIRNA | ShortStack |
Data from Lunardon et al. (2020)