het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Capsicum annuum (Pepper) genome build 1.6 (can-b1.6)

Version v1.6 of Capsicum annuum cv. Criollo de Morelos 334 from The Pepper Genome Platform

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
can-b1.6r1-16110Capsicum annuum (Pepper) 1.6chr01:178456596-178456853+2,0332.85AUGACAUGUUUAGAACCACAsiRNA20ShortStack
can-b1.6r1-18671Capsicum annuum (Pepper) 1.6chr01:257481876-257482118+1,7522.46AUGACAUGUUUAGAACCACAsiRNA20ShortStack
can-b1.6r1-30505Capsicum annuum (Pepper) 1.6chr03:39859271-39859562-1,3671.92AUGACAUGUUUAGAACCACAsiRNA20ShortStack
can-b1.6r1-30779Capsicum annuum (Pepper) 1.6chr03:82365956-82366223-1,3641.92CUCUGUUGGGAGCGCUGCCUsiRNA20ShortStack
can-b1.6r1-36677Capsicum annuum (Pepper) 1.6chr04:7753631-7753833-1,1721.65AUGACAUGUUUAGGACUACAsiRNA20ShortStack
can-b1.6r1-38127Capsicum annuum (Pepper) 1.6chr04:100151715-100151940+3,7695.29AUGACAUGUUUAGAACCACAsiRNA20ShortStack
can-b1.6r1-38838Capsicum annuum (Pepper) 1.6chr04:195559511-195559718+1,0411.46AUGACAUGUUUAGAACCACAsiRNA20ShortStack
can-b1.6r1-40632Capsicum annuum (Pepper) 1.6chr04:229425578-229425878-1,4792.08UUCCAUUUAUCGGCCAGACAsiRNA20ShortStack
can-b1.6r1-42079Capsicum annuum (Pepper) 1.6chr04:238678089-238678139+7,34810.31UUGGCAUUCUGUCCACCUCCmiR394siRNA20ShortStack
can-b1.6r1-44456Capsicum annuum (Pepper) 1.6chr05:45738833-45739091+59,03882.87GGUAGUUCGAUCGUGGAAUUsiRNA20ShortStack
can-b1.6r1-45011Capsicum annuum (Pepper) 1.6chr05:139039180-139039203+2,6503.72UGCACUGCCUCUUCCCUUUUsiRNA20ShortStack
can-b1.6r1-45922Capsicum annuum (Pepper) 1.6chr05:222595515-222595535+8081.13UCUCCCCGGCAACGGCGCCAsiRNA20ShortStack
can-b1.6r1-48486Capsicum annuum (Pepper) 1.6chr06:12690463-12690492+8131.14CGCUAUCCAUCCUGAGUUCUmiR390siRNA20ShortStack
can-b1.6r1-49223Capsicum annuum (Pepper) 1.6chr06:78561804-78561828-3,4804.89UGCACUGCCUCUUCCCUUUUsiRNA20ShortStack
can-b1.6r1-49738Capsicum annuum (Pepper) 1.6chr06:158338121-158338257-2,2713.19AGGAGACGUUGGGACACUCUsiRNA20ShortStack
can-b1.6r1-55795Capsicum annuum (Pepper) 1.6chr07:28143415-28143634.2,0822.92AUGACAUGUUUAGGACUACAsiRNA20ShortStack
can-MIR2873c-m1Capsicum annuum (Pepper) 1.6chr07:60141005-60141098+10.00AUGUAUGAUUUGGUUGGGAUsiRNA20Qin_et_al_2014
can-b1.6r1-61848Capsicum annuum (Pepper) 1.6chr08:124171086-124171217-4520.63ACAACUUCUACUGCAACGGCsiRNA20ShortStack
can-b1.6r1-64330Capsicum annuum (Pepper) 1.6chr09:13686625-13687092+1,2451.75AUUGUCUCUCACGAAUGCCUsiRNA20ShortStack
can-b1.6r1-66371Capsicum annuum (Pepper) 1.6chr09:224223671-224223866-1,1511.62AUGACAUGUUUAGAACCACAsiRNA20ShortStack
can-b1.6r1-70051Capsicum annuum (Pepper) 1.6chr10:29232107-29232316+8201.15AUGACAUGUUUAGAACCACAsiRNA20ShortStack
can-b1.6r1-73410Capsicum annuum (Pepper) 1.6chr10:229880474-229880490-450.06AUGUUAGGCAUGCAGCAAUGsiRNA20ShortStack
can-b1.6r1-81933Capsicum annuum (Pepper) 1.6chr12:18214700-18214868-1,2921.81AAGGAGACGUUGGGACACUUsiRNA20ShortStack
can-b1.6r1-83663Capsicum annuum (Pepper) 1.6chr12:168252901-168252922-1,0871.53GGUCCCCGGCAACGGCGCCAmiR8175siRNA20ShortStack
can-b1.6r1-84935Capsicum annuum (Pepper) 1.6chr12:238131693-238132071+6,6399.32UUGGCAUUCUGUCUACCUCCmiR394siRNA20ShortStack
can-b1.6r1-84977Capsicum annuum (Pepper) 1.6chr12:238465964-238466269+11,49116.13UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
can-b1.6r1-5201Capsicum annuum (Pepper) 1.6PGAv.1.6.scaffold1889:15428-15711+3,5574.99AUUGGACUGAAGGGAGCUCCmiR319siRNA20ShortStack
can-b1.6r1-6891Capsicum annuum (Pepper) 1.6PGAv.1.6.scaffold31386:76-189.5040.71GCAGAGCUAUGUCGAUCGGUsiRNA20ShortStack
can-b1.6r1-9926Capsicum annuum (Pepper) 1.6PGAv.1.6.scaffold942:672403-672646-3,5534.99AUGACAUGUUUAGAACCACAsiRNA20ShortStack