het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Capsicum annuum (Pepper) genome build 1.6 (can-b1.6)

Version v1.6 of Capsicum annuum cv. Criollo de Morelos 334 from The Pepper Genome Platform

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
can-MIR159a-m1Capsicum annuum (Pepper) 1.6chr01:3711426-3711632+143,138200.91UUUGGAUUGAAGGGAGCUCUAmiR159nearMIRNAQin_et_al_2014
can-b1.6r1-11742Capsicum annuum (Pepper) 1.6chr01:7489715-7489740+7261.02AGACAAGGUGAAGAAUCGAAUCCUnearMIRNAShortStack
can-b1.6r1-12054Capsicum annuum (Pepper) 1.6chr01:9640507-9640796+69,31797.29UAAGAUCGAGCACAAGUUGUUnearMIRNAShortStack
can-b1.6r1-12903Capsicum annuum (Pepper) 1.6chr01:17735913-17736013+1,1061.55UUCUGAGAUAUUAACUGUAGUnearMIRNAShortStack
can-MIRC29-m1Capsicum annuum (Pepper) 1.6chr01:69104826-69104930-1,3321.87UGAAACAAAAUGGAGUCUCACACnearMIRNAQin_et_al_2014
can-b1.6r1-14967Capsicum annuum (Pepper) 1.6chr01:69104828-69104923-1,3321.87UGAAACAAAAUGGAGUCUCACACnearMIRNAShortStack
can-b1.6r1-15822Capsicum annuum (Pepper) 1.6chr01:138542576-138542641+9081.27CUUGAAUGAGGAUUGGAUAAGAUUnearMIRNAShortStack
can-b1.6r1-16590Capsicum annuum (Pepper) 1.6chr01:198350006-198350067-5640.79AUUAGUUCCAUUUCAAACAAGAGUnearMIRNAShortStack
can-b1.6r1-17521Capsicum annuum (Pepper) 1.6chr01:245176613-245176690-5620.79AACGCGGAUCAAGUUCAAGAAGCUnearMIRNAShortStack
can-b1.6r1-17838Capsicum annuum (Pepper) 1.6chr01:250626330-250626448-18,42725.86UUUUAGCAAGAGUUGUUUUCCmiR6024nearMIRNAShortStack
can-MIR168a-m1Capsicum annuum (Pepper) 1.6chr01:303173528-303173593+1,9182.69CCUGCCUUGCAUCAACUGAAUmiR168nearMIRNAQin_et_al_2014
can-MIRC15-m1Capsicum annuum (Pepper) 1.6chr02:12957969-12958042-100.01UAAGAAGAUAAUAGCAGAGCGnearMIRNAQin_et_al_2014
can-b1.6r1-21484Capsicum annuum (Pepper) 1.6chr02:81630578-81630699+1,9682.76AUCGAGAACAUGAAUAGAUAGGAAnearMIRNAShortStack
can-b1.6r1-21723Capsicum annuum (Pepper) 1.6chr02:96762449-96762576-8011.12AGGUAUUAUUUCUGAAAAGGCACCnearMIRNAShortStack
can-b1.6r1-23421Capsicum annuum (Pepper) 1.6chr02:139211709-139211870+3,9005.47GAAAAGAUAGACAUGCUGUAGCCUnearMIRNAShortStack
can-b1.6r1-25476Capsicum annuum (Pepper) 1.6chr02:157142090-157142218-1,2521.76AGAUGACACUUAUUUUUAGGACGGnearMIRNAShortStack
can-b1.6r1-26507Capsicum annuum (Pepper) 1.6chr02:164620301-164620568+1,0011.41UUAGCUAUGUCAACCAAGGCCCnearMIRNAShortStack
can-b1.6r1-26664Capsicum annuum (Pepper) 1.6chr02:165612138-165612162+1,2011.69UCGCAGGAGAGAUGGCACUUAmiR3627nearMIRNAShortStack
can-b1.6r1-28801Capsicum annuum (Pepper) 1.6chr03:14668269-14668307+4710.66UGAACAAGUAGAUACACAUGUCCUnearMIRNAShortStack
can-b1.6r1-30498Capsicum annuum (Pepper) 1.6chr03:39836821-39836848-1910.27UGGAUCAGUUGUAGGCAGCAGnearMIRNAShortStack
can-b1.6r1-31407Capsicum annuum (Pepper) 1.6chr03:179792390-179792577+42,82560.11UUGGACUGAAGGGAGCUCCUUmiR319nearMIRNAShortStack
can-b1.6r1-32979Capsicum annuum (Pepper) 1.6chr03:252736200-252736226-2970.42ACCGGUGGUAGAUGAGUGUCAGACnearMIRNAShortStack
can-b1.6r1-33282Capsicum annuum (Pepper) 1.6chr03:256615578-256615611+2,9324.12AGGCGUCGUCUGAGGCUAGUCnearMIRNAShortStack
can-b1.6r1-33458Capsicum annuum (Pepper) 1.6chr03:258205894-258205915-3270.46AGAGUCUGUGAAACAUAGGUUnearMIRNAShortStack
can-b1.6r1-36112Capsicum annuum (Pepper) 1.6chr04:391736-391895-6,160,9658,647.51UCUCGGACCAGGCUUCAUUCCmiR166nearMIRNAShortStack
can-MIR166g-m1Capsicum annuum (Pepper) 1.6chr04:391807-391898-6,160,3498,646.65UCUCGGACCAGGCUUCAUUCCmiR166nearMIRNAQin_et_al_2014
can-b1.6r1-38592Capsicum annuum (Pepper) 1.6chr04:179315028-179315077-4940.69AUAAGACUAAUGUAGAAUAUGGUAnearMIRNAShortStack
can-b1.6r1-38935Capsicum annuum (Pepper) 1.6chr04:198181461-198181503-9671.36UUUACAUGAUUUGACAUAAAGGAGnearMIRNAShortStack
can-b1.6r1-41145Capsicum annuum (Pepper) 1.6chr04:232782124-232782250+1,2701.78AAACGUGACAAGUAAAAGUGAACAnearMIRNAShortStack
can-b1.6r1-43542Capsicum annuum (Pepper) 1.6chr05:13296021-13296203+6,9779.79AACUGAGAUAAUACUGAACAGAGGnearMIRNAShortStack
can-b1.6r1-43598Capsicum annuum (Pepper) 1.6chr05:14097529-14097621-3500.49AACUGUUACUGACAUGCACUGGGAnearMIRNAShortStack
can-b1.6r1-44385Capsicum annuum (Pepper) 1.6chr05:40009590-40009675-3590.50UUCUUCAUAGAAGAAUGUGGGAUCnearMIRNAShortStack
can-MIR172i-m1Capsicum annuum (Pepper) 1.6chr06:30060047-30060101-6630.93GGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAQin_et_al_2014
can-b1.6r1-48866Capsicum annuum (Pepper) 1.6chr06:30060063-30060086-6630.93GGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAShortStack
can-b1.6r1-49356Capsicum annuum (Pepper) 1.6chr06:108339331-108339364+9721.36AAUGUCUGACAGACUUUUGAGCCUnearMIRNAShortStack
can-b1.6r1-49557Capsicum annuum (Pepper) 1.6chr06:136466904-136466928-1910.27AAUUGAAUGGAACUCGCUAAUUGAnearMIRNAShortStack
can-b1.6r1-49804Capsicum annuum (Pepper) 1.6chr06:162281409-162281437-6680.94ACUAUCAUAAGUGAUGGAGGAUCUnearMIRNAShortStack
can-b1.6r1-49938Capsicum annuum (Pepper) 1.6chr06:177256839-177256872-4330.61AAGCUUUUGGAUUGGGUGGCAnearMIRNAShortStack
can-b1.6r1-51703Capsicum annuum (Pepper) 1.6chr06:221083815-221084021-2,4743.47AGACCACCUGAAUCGAUGGACUCUnearMIRNAShortStack
can-MIR171d-m1Capsicum annuum (Pepper) 1.6chr06:222384560-222384653+2620.37UGAUUGAGCCGUGCCAAUAUCmiR171nearMIRNAQin_et_al_2014
can-b1.6r1-56474Capsicum annuum (Pepper) 1.6chr07:116423137-116423182+1,0111.42AACGAAGAAGCAAGAGCAUGUnearMIRNAShortStack
can-b1.6r1-57046Capsicum annuum (Pepper) 1.6chr07:190266544-190266567-1940.27GAGUAACUCUGUCAUCACGGCUUnearMIRNAShortStack
can-b1.6r1-58058Capsicum annuum (Pepper) 1.6chr07:225235711-225235847-8111.14AAUCUCGGGAUUGUUAUGUGGGAUnearMIRNAShortStack
can-b1.6r1-60615Capsicum annuum (Pepper) 1.6chr08:925968-926262+6,3798.95AUGUAGCACCUUUGACGUGAGCCUnearMIRNAShortStack
can-b1.6r1-61615Capsicum annuum (Pepper) 1.6chr08:107214747-107214774+460.07UAUUGUAGUGACUGUUAUUAUGGUnearMIRNAShortStack
can-MIR169d-m1Capsicum annuum (Pepper) 1.6chr08:114366194-114366297+1090.15UUAGCCAAGGAUGACUUGCCUmiR169nearMIRNAQin_et_al_2014
can-MIR169e-m1Capsicum annuum (Pepper) 1.6chr08:114429930-114430038+690.10GGCAGUCGUCUUUAGCUAUAnearMIRNAQin_et_al_2014
can-b1.6r1-61728Capsicum annuum (Pepper) 1.6chr08:115366867-115366890-1220.17AACGGAAGACUCAUAUGUUUGAUUnearMIRNAShortStack
can-b1.6r1-61744Capsicum annuum (Pepper) 1.6chr08:115881775-115881873-2000.28AAAGUUGAACGAGCAGACACACAUnearMIRNAShortStack
can-b1.6r1-61850Capsicum annuum (Pepper) 1.6chr08:124189206-124189248-4270.60UUACUACAAGCAUGGCAUUAGAnearMIRNAShortStack
can-b1.6r1-65580Capsicum annuum (Pepper) 1.6chr09:87648194-87648235-5130.72UCACGUCUUGAAGCUUGAAGAACCnearMIRNAShortStack
can-b1.6r1-67555Capsicum annuum (Pepper) 1.6chr09:263591112-263591393-1,6482.31AACUUUUGUAGCUGACAUGGCACCnearMIRNAShortStack
can-b1.6r1-68786Capsicum annuum (Pepper) 1.6chr10:1556314-1556429-2,7023.79UUGUUGUGCAACUCAUUUGGUnearMIRNAShortStack
can-b1.6r1-70324Capsicum annuum (Pepper) 1.6chr10:56145146-56145178+2710.38UGACGUUAAGAUAGACCGUGCGnearMIRNAShortStack
can-b1.6r1-70749Capsicum annuum (Pepper) 1.6chr10:116133062-116133086-2040.29UUGAACAUUGAACAACUAAGACAGnearMIRNAShortStack
can-b1.6r1-71010Capsicum annuum (Pepper) 1.6chr10:158875951-158876029-1,5732.21AAUUCUAAGGACUUGAACUCGUGAnearMIRNAShortStack
can-b1.6r1-71111Capsicum annuum (Pepper) 1.6chr10:172243648-172243819+1490.21UAGGUGUACAUUCUCAAAGUUnearMIRNAShortStack
can-b1.6r1-71791Capsicum annuum (Pepper) 1.6chr10:203014819-203014931+8011.12AUAGGUCGUAGAUGAAUGUCGGUUnearMIRNAShortStack
can-b1.6r1-71933Capsicum annuum (Pepper) 1.6chr10:209191539-209191561+7171.01UGAUAAGAUAUCUGGUACGCUnearMIRNAShortStack
can-b1.6r1-72688Capsicum annuum (Pepper) 1.6chr10:224505055-224505122-3,8495.40UGAAUCCUUCUGCUAUCCAUAAmiR6027nearMIRNAShortStack
can-b1.6r1-72691Capsicum annuum (Pepper) 1.6chr10:224505868-224505942-24,31134.12AUGGGUAGCGAAGGAUUAACGnearMIRNAShortStack
can-b1.6r1-73606Capsicum annuum (Pepper) 1.6chr10:230747846-230747907-3690.52AGGGGUGUUGAAUGAGCAGAUUGAnearMIRNAShortStack
can-b1.6r1-75306Capsicum annuum (Pepper) 1.6chr11:10938032-10938226-1,2861.81UUGUGAAGUUGGAGUGCAUCnearMIRNAShortStack
can-MIR395e-m1Capsicum annuum (Pepper) 1.6chr11:32093644-32093714-640.09CUGAAGUGUUUGGGGGAACUCmiR395nearMIRNAQin_et_al_2014
can-b1.6r1-76315Capsicum annuum (Pepper) 1.6chr11:34890076-34890225+9001.26AGACUUUAAAUUCUGGAUCCGCCUnearMIRNAShortStack
can-b1.6r1-77028Capsicum annuum (Pepper) 1.6chr11:89818223-89818251-7501.05AGCUCAAUUUCGUUCGGUCGGUAnearMIRNAShortStack
can-b1.6r1-77301Capsicum annuum (Pepper) 1.6chr11:138606331-138606630+5,5237.75CAAGACACGGAGAGGGAUCUCnearMIRNAShortStack
can-b1.6r1-78003Capsicum annuum (Pepper) 1.6chr11:238057900-238058191+3,5855.03UCGAGAGUGCACAUGUAGACAnearMIRNAShortStack
can-b1.6r1-78322Capsicum annuum (Pepper) 1.6chr11:249596803-249596878-3,6345.10AGAAGCAAGAGCAAUGACUAUUCAnearMIRNAShortStack
can-b1.6r1-78586Capsicum annuum (Pepper) 1.6chr11:255036821-255036844+3030.43AGAGUUCAAAGCAAGAUGGUCGUUnearMIRNAShortStack
can-MIR6149-m1Capsicum annuum (Pepper) 1.6chr12:3788338-3788523-157,750221.42UUCGAUACGCACCUGAAUCGCCUnearMIRNAQin_et_al_2014
can-b1.6r1-81401Capsicum annuum (Pepper) 1.6chr12:9961728-9961826-6810.96GGGAAUGUAGUUAUGAUGGGGUUnearMIRNAShortStack
can-b1.6r1-81591Capsicum annuum (Pepper) 1.6chr12:12357294-12357316+1,0161.43AGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAShortStack
can-b1.6r1-83142Capsicum annuum (Pepper) 1.6chr12:65532251-65532447+4,0815.73AGUCAACUCAGAAUCGGUCUGUGUnearMIRNAShortStack
can-b1.6r1-83390Capsicum annuum (Pepper) 1.6chr12:121663068-121663214+1,1141.56AGGAGUCUGUUUAACUCGUGACCUnearMIRNAShortStack
can-MIR319a-m1Capsicum annuum (Pepper) 1.6chr12:194248738-194248914+9231.30UUGGACUGAAGGGAGCUCCCUmiR319nearMIRNAQin_et_al_2014
can-MIR394a-m1Capsicum annuum (Pepper) 1.6chr12:238131710-238131791+6,1788.67UUGGCAUUCUGUCUACCUCCmiR394nearMIRNAQin_et_al_2014
can-MIR394b-m1Capsicum annuum (Pepper) 1.6PGAv.1.6.scaffold1577:37537-37616-940.13UUGGCAUUCUGUCCACCUCCmiR394nearMIRNAQin_et_al_2014
can-b1.6r1-4248Capsicum annuum (Pepper) 1.6PGAv.1.6.scaffold1645:200079-200105-2300.32AUACAUGUAAACUUCGAUGUACAAnearMIRNAShortStack
can-b1.6r1-6490Capsicum annuum (Pepper) 1.6PGAv.1.6.scaffold2844:9862-9930-6670.94AAUUCUAACUCUGACGCGUGUAGUnearMIRNAShortStack
can-b1.6r1-7110Capsicum annuum (Pepper) 1.6PGAv.1.6.scaffold322:1593080-1593299-1,4161.99AAAAGAACCUGAACAACGUCAUGUnearMIRNAShortStack
can-b1.6r1-7149Capsicum annuum (Pepper) 1.6PGAv.1.6.scaffold322:1832956-1833084-2,8393.99AGUGACGGAAACAGAACUUUCAUCnearMIRNAShortStack
can-b1.6r1-7354Capsicum annuum (Pepper) 1.6PGAv.1.6.scaffold33858:126-203-1820.26AGUUUGCAUAAGCUGGCUUGGACAnearMIRNAShortStack
can-b1.6r1-8624Capsicum annuum (Pepper) 1.6PGAv.1.6.scaffold588:1638339-1638541-1,6872.37UGAACAAGUAGAUACACAUGUCCUnearMIRNAShortStack
can-MIR399h-m1Capsicum annuum (Pepper) 1.6PGAv.1.6.scaffold866:871323-871419-310.04GGGCUGAUCUUCUAUGGCAAnearMIRNAQin_et_al_2014