het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Solanum tuberosum (Potato) genome build 4.04 (stu-b4.04)

Version v4.04 of Solanum tuberosum cv. DM1-3 516 R44 from Spud DB

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
stu-b4.04r1-4924Solanum tuberosum (Potato) 4.04chr00:44639100-44639122.3800.62GUUAAGAAUAGAAACGAAUGsiRNA20ShortStack
stu-b4.04r1-6712Solanum tuberosum (Potato) 4.04chr01:17326380-17326401+1,9553.16CUUUAACUUUCUUGCUCAAUsiRNA20ShortStack
stu-b4.04r1-7055Solanum tuberosum (Potato) 4.04chr01:31306341-31306361+4320.70AAGUUGGCAUAUUGUUGGGCsiRNA20ShortStack
stu-b4.04r1-16556Solanum tuberosum (Potato) 4.04chr02:33695961-33696168+28,28645.76UUGACAGAAGAUAGAGAGCAmiR156siRNA20ShortStack
stu-b4.04r1-18192Solanum tuberosum (Potato) 4.04chr02:43668900-43669786+3,339,7585,402.59GGCGGAUGUAGCCAAGUGGAsiRNA20ShortStack
stu-b4.04r1-20240Solanum tuberosum (Potato) 4.04chr03:6996111-6996341+1,4572.36GGAGGAAUCAAUGAGAGGACsiRNA20ShortStack
stu-b4.04r1-20386Solanum tuberosum (Potato) 4.04chr03:8988056-8988573-3,4915.65GGGUCCCACUGGGCGUGCCAsiRNA20ShortStack
stu-b4.04r1-28133Solanum tuberosum (Potato) 4.04chr04:14702792-14702811-2590.42GUGUCCCACUGGGCGUGCCAsiRNA20ShortStack
stu-b4.04r1-31471Solanum tuberosum (Potato) 4.04chr04:65136485-65136507-2020.33GUUAUUCUAUUCCACCUCUUsiRNA20ShortStack
stu-b4.04r1-32850Solanum tuberosum (Potato) 4.04chr04:71352978-71353092+48,43478.35AGGUGGGCAUACUGUCAACAmiR394siRNA20ShortStack
stu-b4.04r1-33066Solanum tuberosum (Potato) 4.04chr05:431102-431380+1,9143.10AUGUGCAUACUAAUCAGAACsiRNA20ShortStack
stu-b4.04r1-35872Solanum tuberosum (Potato) 4.04chr05:31698837-31698863+6831.11UUGAUCAUGAUGUUGUUGUAsiRNA20ShortStack
stu-b4.04r1-39496Solanum tuberosum (Potato) 4.04chr06:28061575-28061859-7161.16GAUCCCCAGCGGAGUCGCCAsiRNA20ShortStack
stu-b4.04r1-39847Solanum tuberosum (Potato) 4.04chr06:32692016-32692218+3,3045.35GUUAUUCUAUUCCACCUCUUsiRNA20ShortStack
stu-b4.04r1-39887Solanum tuberosum (Potato) 4.04chr06:33730674-33730711-5800.94GUCGAGAAGGAUCUUAGGGCsiRNA20ShortStack
stu-b4.04r1-40960Solanum tuberosum (Potato) 4.04chr06:42023846-42023868+5170.84AGGAAGUGGAGCAUGAAGCCsiRNA20ShortStack
stu-b4.04r1-41372Solanum tuberosum (Potato) 4.04chr06:45180485-45180506-1,5282.47AAAUCAUCAUCUUUCCAACUsiRNA20ShortStack
stu-b4.04r1-45932Solanum tuberosum (Potato) 4.04chr07:20115722-20115742-1390.23CUUUAACUUUCUUGCUCAAUsiRNA20ShortStack
stu-b4.04r1-51410Solanum tuberosum (Potato) 4.04chr08:26516022-26516041+4350.70GUGUCCCACUGGGCGUGCCAsiRNA20ShortStack
stu-b4.04r1-51826Solanum tuberosum (Potato) 4.04chr08:35111742-35112079-188,844305.49UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
stu-b4.04r1-52133Solanum tuberosum (Potato) 4.04chr08:38386767-38386789+3520.57CUCAAAUUCUUAUACAGAGCsiRNA20ShortStack
stu-b4.04r1-54812Solanum tuberosum (Potato) 4.04chr08:55496012-55496270-144,024232.98AGAGCUUUCUUCGGUCCACAmiR319siRNA20ShortStack
stu-MIR319a-m1Solanum tuberosum (Potato) 4.04chr08:55496027-55496198-143,997232.94AGAGCUUUCUUCGGUCCACAmiR319siRNA20miRBase21-BestBlastHit
stu-b4.04r1-55661Solanum tuberosum (Potato) 4.04chr09:2907927-2907947+740.12CUAUUGCUCCUUUCUUUUUAsiRNA20ShortStack
stu-b4.04r1-56491Solanum tuberosum (Potato) 4.04chr09:8323106-8323328+1,8883.05GUUAUUCUAUUCCACCUCUUsiRNA20ShortStack
stu-b4.04r1-57256Solanum tuberosum (Potato) 4.04chr09:21778002-21778024-2,1823.53GUUCCCCGGCAGCGGCGCCAsiRNA20ShortStack
stu-b4.04r1-57569Solanum tuberosum (Potato) 4.04chr09:32086562-32086582+2080.34UUCCCUUUUGGUAAGUCAACsiRNA20ShortStack
stu-b4.04r1-60721Solanum tuberosum (Potato) 4.04chr09:60418047-60418268-3790.61UUAUGGUGGUUAUCCUCAGGsiRNA20ShortStack
stu-b4.04r1-60730Solanum tuberosum (Potato) 4.04chr09:60467925-60467950+1440.23GAGAAUCGUAUCUGUGGCUAsiRNA20ShortStack
stu-b4.04r1-64303Solanum tuberosum (Potato) 4.04chr10:48491183-48491203-870.14UCGAGGACACAAAUUUUCCUsiRNA20ShortStack
stu-b4.04r1-69192Solanum tuberosum (Potato) 4.04chr11:18846861-18846882-1,4232.30GUUCCCCGGCAGCGGCGCCAsiRNA20ShortStack
stu-b4.04r1-70131Solanum tuberosum (Potato) 4.04chr11:37015047-37016130.4,1706.75AUUGUCGUUUUACCUACUCUsiRNA20ShortStack
stu-b4.04r1-320Solanum tuberosum (Potato) 4.04ChrUn:11261862-11261884.3540.57CAUUCGUUUCUAUUCUUAACsiRNA20ShortStack
stu-MIR7991a-m2Solanum tuberosum (Potato) 4.04ChrUn:34620732-34620778.20.00GACCUCUUGAUAUCGGUAUUAUsiRNA20miRBase21-BestBlastHit
stu-MIR7991b-m2Solanum tuberosum (Potato) 4.04ChrUn:34620732-34620778.20.00GACCUCUUGAUAUCGGUAUUAUsiRNA20miRBase21-BestBlastHit