het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Solanum lycopersicum (Tomato) genome build 2.5 (sly-b2.5)

Version v2.5 of Solanum lycopersicum cv. Heinz 1706 from Ensembl Plants

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
sly-b2.5r1-4957Solanum lycopersicum (Tomato) 2.51:31581090-31581314.16,52211.18CUCUGCCACUUACAAUACCUsiRNA20ShortStack
sly-b2.5r1-5780Solanum lycopersicum (Tomato) 2.51:51712283-51712308-2680.18CGGUGUGACGAAGACUGGCAsiRNA20ShortStack
sly-b2.5r1-6021Solanum lycopersicum (Tomato) 2.51:55694894-55694915+5020.34GAAACUGGAAAACUUGAAUCsiRNA20ShortStack
sly-b2.5r1-7720Solanum lycopersicum (Tomato) 2.51:71764390-71764419+1,7681.20CUUUUAAUAUAUUGAGGGCUsiRNA20ShortStack
sly-b2.5r1-8444Solanum lycopersicum (Tomato) 2.51:74894683-74894733-3,9142.65AGUUCCACAGCUUUCUUGAAsiRNA20ShortStack
sly-b2.5r1-14013Solanum lycopersicum (Tomato) 2.51:89542680-89542703-2850.19CCCGUUAUCCAUUGAACCAAsiRNA20ShortStack
sly-b2.5r1-21227Solanum lycopersicum (Tomato) 2.510:22638223-22638243.110.01AACUUAGGGGAUAAAUUAAGAGAAsiRNA20ShortStack
sly-b2.5r1-22206Solanum lycopersicum (Tomato) 2.510:38082317-38082552-2,3041.56UCCGGAUACCUGUAAAGACAsiRNA20ShortStack
sly-b2.5r1-22360Solanum lycopersicum (Tomato) 2.510:39754310-39754437-9380.64CAUACUGUACAUGAGGUACAsiRNA20ShortStack
sly-b2.5r1-22728Solanum lycopersicum (Tomato) 2.510:41873860-41873931-7460.51AGGUAUACAUUAGCAUGGGAsiRNA20ShortStack
sly-b2.5r1-23559Solanum lycopersicum (Tomato) 2.510:47759220-47759244+1650.11AUCUGGUGUGACGAAGACUGGCAsiRNA20ShortStack
sly-b2.5r1-24425Solanum lycopersicum (Tomato) 2.510:52938921-52938945+2,7701.88UUGGCUAUCUUGUGUUGGAUsiRNA20ShortStack
sly-b2.5r1-26825Solanum lycopersicum (Tomato) 2.510:60582527-60582759.4,6923.18GUUCCAAUUUUAUCGGAUGUsiRNA20ShortStack
sly-b2.5r1-31158Solanum lycopersicum (Tomato) 2.511:4175593-4176428.1,6991.15UUACAACAACUCUGCUGCCUsiRNA20ShortStack
sly-b2.5r1-34126Solanum lycopersicum (Tomato) 2.511:16406909-16407064-1,9181.30AAGGCACCUAAGACACUCCAsiRNA20ShortStack
sly-b2.5r1-35600Solanum lycopersicum (Tomato) 2.511:33010104-33010142.3240.22UCUUCUCUUGGACGACGGCAsiRNA20ShortStack
sly-b2.5r1-35742Solanum lycopersicum (Tomato) 2.511:33640388-33640410-1,6571.12CAAGUGUUGUCUUACCUACUsiRNA20ShortStack
sly-b2.5r1-36351Solanum lycopersicum (Tomato) 2.511:40004299-40004318+5410.37GAUCCCCGGCAGCGGCGCCAmiR8175siRNA20ShortStack
sly-b2.5r1-36415Solanum lycopersicum (Tomato) 2.511:41369294-41369314-4880.33CUUGAGGAAUGUAGCUCCCUsiRNA20ShortStack
sly-b2.5r1-37509Solanum lycopersicum (Tomato) 2.511:50318903-50319024+1,5311.04AAAAAAAAAUUCGACGCGAUsiRNA20ShortStack
sly-b2.5r1-37807Solanum lycopersicum (Tomato) 2.511:50969783-50969805-14,5219.83AGACAGAACUUAAUGGGCCUsiRNA20ShortStack
sly-b2.5r1-39463Solanum lycopersicum (Tomato) 2.511:54524909-54525902.45,35430.70UUUGACAAGAGUGACUGAUUsiRNA20ShortStack
sly-b2.5r1-41770Solanum lycopersicum (Tomato) 2.512:3275189-3275494-23,48415.89CUGGCAGAAGAGAGUGAGCAmiR156siRNA20ShortStack
sly-b2.5r1-42170Solanum lycopersicum (Tomato) 2.512:3962339-3963527-7,8805.33AUUGCUUUGGUUGCUUUUAUsiRNA20ShortStack
sly-b2.5r1-43140Solanum lycopersicum (Tomato) 2.512:6244968-6244987-130.01AGGAUGGCAGAAGGGGAGACsiRNA20ShortStack
sly-b2.5r1-46132Solanum lycopersicum (Tomato) 2.512:38190758-38190778-2160.15UGAAUUUGAUUGCGAGUGAUsiRNA20ShortStack
sly-b2.5r1-46349Solanum lycopersicum (Tomato) 2.512:38718517-38718703+2,6021.76GUUAUUCUAUUCCACCUCUUsiRNA20ShortStack
sly-b2.5r1-50685Solanum lycopersicum (Tomato) 2.512:64661811-64662412.33,91922.96UUGGCAUUCUGUCCACCUCCmiR394siRNA20ShortStack
sly-b2.5r1-51456Solanum lycopersicum (Tomato) 2.512:66319331-66319355+840.06UAGUGAGGAGGAGAAGGGCAsiRNA20ShortStack
sly-b2.5r1-51737Solanum lycopersicum (Tomato) 2.512:67082774-67082841-1,0950.74GUAUGGAUAUGGACCUCUUUsiRNA20ShortStack
sly-b2.5r1-52546Solanum lycopersicum (Tomato) 2.52:13833725-13833744.350.02UUGCUUUUACAGAACUUCCUUsiRNA20ShortStack
sly-b2.5r1-53076Solanum lycopersicum (Tomato) 2.52:22205505-22205782-2,3151.57AGCUAGUGUCAUGUAGGCCUsiRNA20ShortStack
sly-b2.5r1-58615Solanum lycopersicum (Tomato) 2.52:41373398-41373418+6990.47AACAAGAACUAUAGAAAUGUUsiRNA20ShortStack
sly-b2.5r1-59645Solanum lycopersicum (Tomato) 2.52:43791644-43791664+9,6936.56CUUGUUGUGUUUGAAACUGUsiRNA20ShortStack
sly-b2.5r1-68717Solanum lycopersicum (Tomato) 2.53:22076700-22076720+1010.07AGAAAGAAAAGAAAAACGGGsiRNA20ShortStack
sly-b2.5r1-70335Solanum lycopersicum (Tomato) 2.53:47814599-47815666+172,765116.93AACAAGAAUUCUUGAACAGCsiRNA20ShortStack
sly-b2.5r1-72762Solanum lycopersicum (Tomato) 2.53:56434691-56434712.1810.12AAGUUACAUGACUGUUAAUUsiRNA20ShortStack
sly-b2.5r1-74142Solanum lycopersicum (Tomato) 2.53:60669950-60669969+1090.07AGUUUGUCGCUCUGAUUCGUsiRNA20ShortStack
sly-b2.5r1-74687Solanum lycopersicum (Tomato) 2.53:62287616-62287758+5620.38UCCGGAUAGCUGCAACAACAsiRNA20ShortStack
sly-b2.5r1-81002Solanum lycopersicum (Tomato) 2.54:6163517-6163537-1250.09AGGGUUUCGUGUGUAGUUGGsiRNA20ShortStack
sly-b2.5r1-81189Solanum lycopersicum (Tomato) 2.54:6864767-6864853-4,4713.03UAUGGACGGAUAGUAUAAUAsiRNA20ShortStack
sly-b2.5r1-81537Solanum lycopersicum (Tomato) 2.54:7911595-7911615+1110.08AGAGUAUGAACAAAUUCAGAsiRNA20ShortStack
sly-b2.5r1-82297Solanum lycopersicum (Tomato) 2.54:19551941-19551963-1740.12UUAAACAAGGCUCUAUGACGsiRNA20ShortStack
sly-b2.5r1-83257Solanum lycopersicum (Tomato) 2.54:32916349-32916422+2230.15UUUGAGUCCAAAAUGAAUUUUsiRNA20ShortStack
sly-b2.5r1-83396Solanum lycopersicum (Tomato) 2.54:36266037-36266056+6400.43AGUCCAUAGCCUAGAUUUGAsiRNA20ShortStack
sly-b2.5r1-83973Solanum lycopersicum (Tomato) 2.54:42808880-42808901.5720.39UCUGUUGUAAGGGCCCGUGAsiRNA20ShortStack
sly-b2.5r1-84166Solanum lycopersicum (Tomato) 2.54:44082998-44083021+660.05UGAGUUGAAGACGAUGGCAAsiRNA20ShortStack
sly-b2.5r1-84335Solanum lycopersicum (Tomato) 2.54:45600763-45600787.5120.35AAGUAUUUAGAUAGUCUUGGUsiRNA20ShortStack
sly-b2.5r1-86023Solanum lycopersicum (Tomato) 2.54:53312361-53312381.3700.25UACUACCUCCACAUCAACUGsiRNA20ShortStack
sly-b2.5r1-86654Solanum lycopersicum (Tomato) 2.54:55165088-55165111+5,3423.62UGUUGAGCUCUUAGCUGCCUsiRNA20ShortStack
sly-b2.5r1-95713Solanum lycopersicum (Tomato) 2.55:16612589-16612609+3830.26UUCCAAAGUUGAUAAAAUAAsiRNA20ShortStack
sly-b2.5r1-96339Solanum lycopersicum (Tomato) 2.55:22671415-22671435+1140.08UUCCUAGUAUCAAAAGCCCUsiRNA20ShortStack
sly-b2.5r1-98652Solanum lycopersicum (Tomato) 2.55:56492795-56492863.1820.12AGUCCCCAGCGGAGUCGCCAmiR5072siRNA20ShortStack
sly-b2.5r1-104384Solanum lycopersicum (Tomato) 2.56:6421355-6421512+4800.33UUUUUUUCGAACUAGUGCCUsiRNA20ShortStack
sly-b2.5r1-104551Solanum lycopersicum (Tomato) 2.56:8450538-8450562+2090.14CGGUCCCACUGGGCGUGCCAsiRNA20ShortStack
sly-b2.5r1-114359Solanum lycopersicum (Tomato) 2.57:323988-324385+141,57695.82UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
sly-b2.5r1-114564Solanum lycopersicum (Tomato) 2.57:853436-853532.2910.20GGAACAAAGGAUUAUCUCAAsiRNA20ShortStack
sly-b2.5r1-117419Solanum lycopersicum (Tomato) 2.57:9219319-9219398+8620.58CUAUAUUCUGAGACACGAGAsiRNA20ShortStack
sly-b2.5r1-118015Solanum lycopersicum (Tomato) 2.57:16209255-16209275-1670.11AGGAAAGACCCUAUGAAGCUsiRNA20ShortStack
sly-b2.5r1-119145Solanum lycopersicum (Tomato) 2.57:39599647-39599679-8,2385.58GUUCCCCGGCAACGGCGCCAmiR8175siRNA20ShortStack
sly-b2.5r1-121663Solanum lycopersicum (Tomato) 2.57:57562944-57563245-6,0334.08GAGGUAAGAUAGUAAGGACCsiRNA20ShortStack
sly-b2.5r1-121688Solanum lycopersicum (Tomato) 2.57:57622507-57622529.6720.46UACUACCUCCACAUCAACUGsiRNA20ShortStack
sly-b2.5r1-122427Solanum lycopersicum (Tomato) 2.57:59405490-59405563.3850.26UUCCGACGUCAAAAAUGCCUsiRNA20ShortStack
sly-MIR9470-m1Solanum lycopersicum (Tomato) 2.58:393508-393994+355,002240.27UUUGGCUCAUGGAUUUUAGCmiR9470siRNA20miRBase21-BestBlastHit
sly-b2.5r1-126551Solanum lycopersicum (Tomato) 2.58:393768-394017+297,401201.28UUUGGCUCAUGGAUUUUAGCmiR9470siRNA20ShortStack
sly-b2.5r1-131003Solanum lycopersicum (Tomato) 2.58:38101040-38101060+8770.59UUGAUUGAUACUUGCGAACUsiRNA20ShortStack
sly-b2.5r1-131236Solanum lycopersicum (Tomato) 2.58:40581587-40581647+1,5061.02AAUGUAAUGACUCGGACCCAsiRNA20ShortStack
sly-b2.5r1-131727Solanum lycopersicum (Tomato) 2.58:48002816-48002836+1630.11CAUUUUUCCUCAAGAGUGCUsiRNA20ShortStack
sly-b2.5r1-134424Solanum lycopersicum (Tomato) 2.58:56377573-56377685+3300.22UUACUACUUUGGAAAAAUUAsiRNA20ShortStack
sly-b2.5r1-136283Solanum lycopersicum (Tomato) 2.58:60418927-60419234+8,8285.98CUUUGUCGCUCCGAUUCGUUsiRNA20ShortStack
sly-b2.5r1-139522Solanum lycopersicum (Tomato) 2.59:1834384-1834630+4,3942.97AGCGAGACUGUCACCAAACAsiRNA20ShortStack
sly-b2.5r1-140156Solanum lycopersicum (Tomato) 2.59:3185606-3185907+1,3790.93UUCCGACGUCAAAAAUGCCGsiRNA20ShortStack
sly-b2.5r1-142786Solanum lycopersicum (Tomato) 2.59:14038829-14038848+2680.18UUCCUGAUGUUGUGGUUGAUsiRNA20ShortStack
sly-b2.5r1-143003Solanum lycopersicum (Tomato) 2.59:15994340-15994360-4410.30UUAAAUUAGAGCUCAAGCCUsiRNA20ShortStack
sly-b2.5r1-144292Solanum lycopersicum (Tomato) 2.59:47496494-47496614-2190.15AGAGGAUAGGAAUGUAUCUGAsiRNA20ShortStack
sly-b2.5r1-147204Solanum lycopersicum (Tomato) 2.59:63593377-63593396+3620.25GCCUGCCACUCUGAUAAGUUsiRNA20ShortStack
sly-b2.5r1-148894Solanum lycopersicum (Tomato) 2.59:67519062-67519081+1590.11AAUAACCUCUUGAACUGACUsiRNA20ShortStack
sly-b2.5r1-152609Solanum lycopersicum (Tomato) 2.5SL2.40sc05224:159478-159498-6800.46AUCAUCAAUUUUACUAGCCUsiRNA20ShortStack
sly-b2.5r1-152917Solanum lycopersicum (Tomato) 2.5SL2.40sc05705:2986-3105-5840.40GAAAAAAAAAUCGACGCGAUsiRNA20ShortStack
sly-b2.5r1-153216Solanum lycopersicum (Tomato) 2.5SL2.40sc06177:51043-51067-8390.57CGAGCAGAAUAUUAUGAGCUsiRNA20ShortStack