het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Phaseolus vulgaris (Common Bean) genome build 1.0 (pvu-b1.0)

Version v1.0 of Phaseolus vulgaris cv. BAT93 from Phytozome

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
pvu-b1.0r1-893Phaseolus vulgaris (Common Bean) 1.0Chr01:5956260-5956625.3662.02AUUUGUAAAAGAUUGUCGGGAGsiRNA22ShortStack
pvu-b1.0r1-894Phaseolus vulgaris (Common Bean) 1.0Chr01:5956871-5956984.990.55GUAGAAUGUCUAAUAAUAGAAGGCsiRNA22ShortStack
pvu-b1.0r1-895Phaseolus vulgaris (Common Bean) 1.0Chr01:5957677-5957969.3521.94CACGAAUGAAUAGUCUGAACCUsiRNA22ShortStack
pvu-b1.0r1-896Phaseolus vulgaris (Common Bean) 1.0Chr01:5958507-5958982.3201.76UGAACAAUGUAGAUACUUUUAUsiRNA22ShortStack
pvu-b1.0r1-897Phaseolus vulgaris (Common Bean) 1.0Chr01:5964819-5965055.6773.73UAUUAACAGAUUUGGAAGUAGAsiRNA22ShortStack
pvu-b1.0r1-898Phaseolus vulgaris (Common Bean) 1.0Chr01:5965459-5965715.5312.93CUAGUGCUCCUUGAACACGGUUsiRNA22ShortStack
pvu-b1.0r1-899Phaseolus vulgaris (Common Bean) 1.0Chr01:5966458-5968248.1,6749.22UAAGACAAUGGGACCAUGCAGAsiRNA22ShortStack
pvu-b1.0r1-900Phaseolus vulgaris (Common Bean) 1.0Chr01:5968464-5969825.1,84710.17UUUACUAUGAAGAGAAGAAUGCsiRNA22ShortStack
pvu-b1.0r1-901Phaseolus vulgaris (Common Bean) 1.0Chr01:5970261-5971013.6283.46UGACAUGUAAUCCAACCUGGACCAsiRNA22ShortStack
pvu-b1.0r1-902Phaseolus vulgaris (Common Bean) 1.0Chr01:5971813-5972366.3421.88CUGGACUCCCAUCUGAACCCUCsiRNA22ShortStack
pvu-b1.0r1-903Phaseolus vulgaris (Common Bean) 1.0Chr01:5972564-5973089.4932.72GUAGAAUGUCUAAUAAUAGAAGGCsiRNA22ShortStack
pvu-b1.0r1-904Phaseolus vulgaris (Common Bean) 1.0Chr01:5973156-5973688.5673.12UGAUACUGCUUACUAAUUGCUUsiRNA22ShortStack
pvu-b1.0r1-1236Phaseolus vulgaris (Common Bean) 1.0Chr01:10860324-10860528.1590.88GAAAGUUAUUCAUGGGUCCCCACUsiRNA22ShortStack
pvu-b1.0r1-1237Phaseolus vulgaris (Common Bean) 1.0Chr01:10861706-10862035.2831.56UAUGUUGCCCUGUUUGAUGAGCsiRNA22ShortStack
pvu-b1.0r1-1353Phaseolus vulgaris (Common Bean) 1.0Chr01:14353552-14353576-5663.12CUAAAUGUAGACAAGCGAGUGGsiRNA22ShortStack
pvu-b1.0r1-1507Phaseolus vulgaris (Common Bean) 1.0Chr01:17549490-17549515+600.33CUUGAGAAGGAGUAGAGGCAGGsiRNA22ShortStack
pvu-b1.0r1-1687Phaseolus vulgaris (Common Bean) 1.0Chr01:23854902-23855161+3,74620.63UGAACACAAAGAUAAACGGCGGsiRNA22ShortStack
pvu-b1.0r1-1748Phaseolus vulgaris (Common Bean) 1.0Chr01:27633405-27633569.8174.50CAUGAACACAAAGAUAAACGGCsiRNA22ShortStack
pvu-b1.0r1-2107Phaseolus vulgaris (Common Bean) 1.0Chr01:37354783-37355403.1,4548.01CAAGAUGGGUCUUCUGACGUAGsiRNA22ShortStack
pvu-b1.0r1-2919Phaseolus vulgaris (Common Bean) 1.0Chr01:44849978-44850701.4182.30UGGAUCGAGGAUAACAAGACGCsiRNA22ShortStack
pvu-b1.0r1-4418Phaseolus vulgaris (Common Bean) 1.0Chr02:2675946-2676070+2351.29GAAGAAGAUCGCUUAACCGUAGsiRNA22ShortStack
pvu-b1.0r1-4967Phaseolus vulgaris (Common Bean) 1.0Chr02:7406003-7406426+144,667796.86AGUUACUAAUUCAUGAUCUGACsiRNA22ShortStack
pvu-b1.0r1-5519Phaseolus vulgaris (Common Bean) 1.0Chr02:19165880-19165913-82,855456.38UGAAGCUGCCAGCAUGAUCUGGmiR167siRNA22ShortStack
pvu-b1.0r1-5828Phaseolus vulgaris (Common Bean) 1.0Chr02:24256135-24256470.1430.79UAACAAGAGAUUGUCGUAAAGAsiRNA22ShortStack
pvu-b1.0r1-7174Phaseolus vulgaris (Common Bean) 1.0Chr02:36812425-36813408-1,7119.43UGAACGGUCAGAAUGAAGUACCsiRNA22ShortStack
pvu-b1.0r1-7507Phaseolus vulgaris (Common Bean) 1.0Chr02:39498229-39498254+1720.95AGUGACGGUAUGAAACAGAUAGsiRNA22ShortStack
MIRNOV330-3Phaseolus vulgaris (Common Bean) 1.0Chr03:2686188-2686282+50.03UUGGUUGCUAAUUAGAUACCCsiRNA22Formey_et_al_2015
pvu-b1.0r1-9293Phaseolus vulgaris (Common Bean) 1.0Chr03:2895276-2895419.1831.01CAGAUUCUGAUGAAGGUGUUGGsiRNA22ShortStack
pvu-b1.0r1-10057Phaseolus vulgaris (Common Bean) 1.0Chr03:9694928-9695245+957,3065,273.04UCAAACGAAGAAAGGCUUAUGGsiRNA22ShortStack
pvu-b1.0r1-10405Phaseolus vulgaris (Common Bean) 1.0Chr03:16257064-16257235-1,1066.09CAAAGGAUCAAAGAACAGCAGAsiRNA22ShortStack
pvu-b1.0r1-10552Phaseolus vulgaris (Common Bean) 1.0Chr03:23424906-23425159.3441.90UUCAAGUUUGACAUGAAACGGUsiRNA22ShortStack
pvu-b1.0r1-11462Phaseolus vulgaris (Common Bean) 1.0Chr03:35827484-35827505-590.33GAGCGGGACUGCAGUGGGGAACsiRNA22ShortStack
pvu-b1.0r1-11791Phaseolus vulgaris (Common Bean) 1.0Chr03:38492526-38492765.5853.22UUGCCAUUGAGAUUUGCGGAAGsiRNA22ShortStack
pvu-b1.0r1-11847Phaseolus vulgaris (Common Bean) 1.0Chr03:39051391-39051484+89,139491.00CUAAUCAAGGAAAUCACAGUAGsiRNA22ShortStack
pvu-b1.0r1-12552Phaseolus vulgaris (Common Bean) 1.0Chr03:43996069-43996263-1090.60UUCGCCUGGCACUCAACCGACACCsiRNA22ShortStack
pvu-b1.0r1-12554Phaseolus vulgaris (Common Bean) 1.0Chr03:44003774-44004216.1660.91CCAUGUCGUCGAAAUAGGCGUAsiRNA22ShortStack
pvu-b1.0r1-13753Phaseolus vulgaris (Common Bean) 1.0Chr03:51850189-51850670.2551.41CUGUAGACACUGAUGGAGAUGGsiRNA22ShortStack
pvu-b1.0r1-13982Phaseolus vulgaris (Common Bean) 1.0Chr04:1564515-1565026-2,71514.96ACCGAACAAUUAUACAAUAUCUsiRNA22ShortStack
pvu-b1.0r1-14139Phaseolus vulgaris (Common Bean) 1.0Chr04:2536836-2536913+1,2887.10CGUCGCAGGAUAGAGGGCACUGmiR5786siRNA22ShortStack
pvu-b1.0r1-14698Phaseolus vulgaris (Common Bean) 1.0Chr04:8587065-8587302+3712.04UUGAGAAUGCAUUGUAACUUUUsiRNA22ShortStack
pvu-b1.0r1-14699Phaseolus vulgaris (Common Bean) 1.0Chr04:8587930-8588075+1190.66CUCUUCUUGGAACAUGGCACCAsiRNA22ShortStack
pvu-b1.0r1-14700Phaseolus vulgaris (Common Bean) 1.0Chr04:8588206-8588616+2861.58UAAGUUGUCGUUGCAAAAGCCUsiRNA22ShortStack
pvu-b1.0r1-14701Phaseolus vulgaris (Common Bean) 1.0Chr04:8617400-8617639+2411.33UCUUAACAGCAAGCAUUUCCGCsiRNA22ShortStack
pvu-b1.0r1-14819Phaseolus vulgaris (Common Bean) 1.0Chr04:10621797-10622272.7243.99AUAGUUGUUUAACUCUGCCUGGsiRNA22ShortStack
pvu-b1.0r1-15323Phaseolus vulgaris (Common Bean) 1.0Chr04:26911050-26911219.1901.05CAGGAGCCCAUGUGUAGAAGGCsiRNA22ShortStack
pvu-b1.0r1-15325Phaseolus vulgaris (Common Bean) 1.0Chr04:26912851-26913088.2761.52UUAUUUGGACUUGAAGAGCGACsiRNA22ShortStack
pvu-b1.0r1-15358Phaseolus vulgaris (Common Bean) 1.0Chr04:28600770-28600854-28,372156.28AGUUACUAAUUCAUGAUCUGACsiRNA22ShortStack
MIRNOV150-5Phaseolus vulgaris (Common Bean) 1.0Chr04:30240629-30240698+20.01UUUGGUACUUCCUUGAUUUGAUsiRNA22Formey_et_al_2015
pvu-b1.0r1-15413Phaseolus vulgaris (Common Bean) 1.0Chr04:30861042-30861066+4232.33UUUGGUACUUCCUUGAUUUGAUsiRNA22ShortStack
pvu-b1.0r1-16139Phaseolus vulgaris (Common Bean) 1.0Chr04:42209170-42209628.2771.53AAUGACUGUUAGACCAAAGGCsiRNA22ShortStack
pvu-b1.0r1-16879Phaseolus vulgaris (Common Bean) 1.0Chr05:1063115-1063190-7704.24UCCAAUUUUCAGCCUCAUCCAAsiRNA22ShortStack
pvu-b1.0r1-19305Phaseolus vulgaris (Common Bean) 1.0Chr05:39194579-39195235.1,5088.31UGAAUGAGACUGAUGGAACGCsiRNA22ShortStack
pvu-b1.0r1-19676Phaseolus vulgaris (Common Bean) 1.0Chr06:1764876-1765122.1410.78UGAAAACAAUGACCAUGCAGAAAGsiRNA22ShortStack
pvu-b1.0r1-20034Phaseolus vulgaris (Common Bean) 1.0Chr06:12895598-12896181.5603.09UGAACCGGCCGAGCUUCUUGGCsiRNA22ShortStack
pvu-b1.0r1-20035Phaseolus vulgaris (Common Bean) 1.0Chr06:12897791-12898531.1,0395.72CGGAUUGGCAACCGCAGAUGGGsiRNA22ShortStack
pvu-b1.0r1-20917Phaseolus vulgaris (Common Bean) 1.0Chr06:21522800-21523046.6203.42AAACACGUAGAUAUAGACCGACsiRNA22ShortStack
pvu-b1.0r1-21308Phaseolus vulgaris (Common Bean) 1.0Chr06:24610637-24611255.8094.46UAGACAUGGAAAUGAAUAAGGCsiRNA22ShortStack
pvu-b1.0r1-21367Phaseolus vulgaris (Common Bean) 1.0Chr06:25077145-25077460+4,08822.52CCAAAUCUGAACAAUAAUGAUUsiRNA22ShortStack
pvu-b1.0r1-22512Phaseolus vulgaris (Common Bean) 1.0Chr07:1577171-1577193+1650.91UUAAAUGUUGAAGAUUGUCCAAsiRNA22ShortStack
pvu-b1.0r1-23043Phaseolus vulgaris (Common Bean) 1.0Chr07:4808396-4809077-2,01811.12CUGCGAGGAAUUGAUGAACUGUsiRNA22ShortStack
pvu-b1.0r1-23290Phaseolus vulgaris (Common Bean) 1.0Chr07:6432207-6432319-8384.62UUCCAAAGGGAUCGCAUUGAUCmiR393siRNA22ShortStack
pvu-b1.0r1-24220Phaseolus vulgaris (Common Bean) 1.0Chr07:17505765-17505789-5242.89CUAAAUGUAGACAAGCGAGUGGsiRNA22ShortStack
pvu-b1.0r1-24466Phaseolus vulgaris (Common Bean) 1.0Chr07:33128007-33128357.4382.41AGGAACUGGAACUGAUUGUUGUsiRNA22ShortStack
pvu-b1.0r1-24467Phaseolus vulgaris (Common Bean) 1.0Chr07:33128819-33129070.2821.55CUUACUAGCGAGAUUGAUAUAGsiRNA22ShortStack
pvu-b1.0r1-24535Phaseolus vulgaris (Common Bean) 1.0Chr07:34371129-34371158-670.37UCCAGACGAGUGGAUAUUGGAUsiRNA22ShortStack
pvu-b1.0r1-24925Phaseolus vulgaris (Common Bean) 1.0Chr07:39065305-39065337.1420.78CAAGAUCAAGUGUAGAGGCCGAsiRNA22ShortStack
pvu-b1.0r1-25074Phaseolus vulgaris (Common Bean) 1.0Chr07:40648909-40649248-1981.09CCUCAAGAAGAAUGUGGAGCCUsiRNA22ShortStack
pvu-b1.0r1-25075Phaseolus vulgaris (Common Bean) 1.0Chr07:40656181-40656581.1841.01UGUAGAAAUCAGAGGAGACUCsiRNA22ShortStack
pvu-b1.0r1-27872Phaseolus vulgaris (Common Bean) 1.0Chr08:8960973-8961093.1650.91CUAGAAAUAUGAAACAACCCGGsiRNA22ShortStack
pvu-b1.0r1-28850Phaseolus vulgaris (Common Bean) 1.0Chr08:27794773-27794884+1190.66GACACUAUAGGCGAGUUCAGGACGsiRNA22ShortStack
pvu-b1.0r1-28885Phaseolus vulgaris (Common Bean) 1.0Chr08:29850610-29850643+5453.00CUAGGACGUGAUAAGGGAAGGCsiRNA22ShortStack
pvu-b1.0r1-29331Phaseolus vulgaris (Common Bean) 1.0Chr08:45714087-45714150+810.45AAAGCGAACAUGAGAAUGGUGGsiRNA22ShortStack
pvu-b1.0r1-29892Phaseolus vulgaris (Common Bean) 1.0Chr08:52142709-52142976.1350.74UCUGACGCAGGGAGAAACAAGUsiRNA22ShortStack
pvu-b1.0r1-33014Phaseolus vulgaris (Common Bean) 1.0Chr09:16542099-16542551.1841.01UCAUGAAUAGGGUUACGGCAUsiRNA22ShortStack
pvu-b1.0r1-33818Phaseolus vulgaris (Common Bean) 1.0Chr09:22526074-22526623.3712.04CUGACGGAAAGUAAGCUCGAGCsiRNA22ShortStack
pvu-b1.0r1-34470Phaseolus vulgaris (Common Bean) 1.0Chr09:28551843-28552022+3131.72UCGAGGAUCAAAGAGAAAAGGCsiRNA22ShortStack
pvu-b1.0r1-34667Phaseolus vulgaris (Common Bean) 1.0Chr09:30360992-30361436.3792.09CAUCGGAUCUUCAUUUUGGACUsiRNA22ShortStack
pvu-b1.0r1-34669Phaseolus vulgaris (Common Bean) 1.0Chr09:30385080-30385433.2561.41UUACAACAGGUUGGACGAGAGCsiRNA22ShortStack
pvu-b1.0r1-35399Phaseolus vulgaris (Common Bean) 1.0Chr09:36001204-36001427-676,1063,724.13AGUUACUAAUUCAUGAUCUGACsiRNA22ShortStack
pvu-b1.0r1-36549Phaseolus vulgaris (Common Bean) 1.0Chr10:10983718-10983794.1780.98CAGGAGGAGGAACGACAACAUCsiRNA22ShortStack
pvu-b1.0r1-36573Phaseolus vulgaris (Common Bean) 1.0Chr10:11412187-11412211-2,41013.28CUUAUUGUAGAAACAGAUGCCUsiRNA22ShortStack
pvu-b1.0r1-36673Phaseolus vulgaris (Common Bean) 1.0Chr10:15886134-15886478+3,88621.41UUACUAAGACUAUUCCUAAAAAsiRNA22ShortStack
pvu-b1.0r1-36840Phaseolus vulgaris (Common Bean) 1.0Chr10:23349173-23349270+8454.65UUUGGACGGUGAAGACGGAGACsiRNA22ShortStack
pvu-b1.0r1-36946Phaseolus vulgaris (Common Bean) 1.0Chr10:29943778-29944130+1,1816.51GGCAAUGAGUCGGACAAAGCGAsiRNA22ShortStack
pvu-b1.0r1-36948Phaseolus vulgaris (Common Bean) 1.0Chr10:29945397-29945623+2201.21CUAAGAUUGAUAGAAAGGGAAAsiRNA22ShortStack
pvu-b1.0r1-36977Phaseolus vulgaris (Common Bean) 1.0Chr10:30320411-30320551.5653.11CUUUGGAUUCACUCAAAACGGAsiRNA22ShortStack
pvu-b1.0r1-38353Phaseolus vulgaris (Common Bean) 1.0Chr11:126526-127112+31,814175.24CAAAAUGACUGAGCAAGCAGUGsiRNA22ShortStack
pvu-b1.0r1-38505Phaseolus vulgaris (Common Bean) 1.0Chr11:658017-658254-7714.25UCUGGAGGAUAUUCAAAUUUGUsiRNA22ShortStack
pvu-b1.0r1-39533Phaseolus vulgaris (Common Bean) 1.0Chr11:7032180-7036215.6,27734.58AGAAAUAGUAGGAACAUGCAGAAGsiRNA22ShortStack
pvu-b1.0r1-40292Phaseolus vulgaris (Common Bean) 1.0Chr11:16740686-16740835+3341.84CCUGAAUGUGCAACAGAAGCCGsiRNA22ShortStack
pvu-b1.0r1-40375Phaseolus vulgaris (Common Bean) 1.0Chr11:20302792-20302818+5503.03CUAAAUGUAGACAAGCGAGUGGsiRNA22ShortStack
pvu-b1.0r1-40484Phaseolus vulgaris (Common Bean) 1.0Chr11:26701970-26702034.1060.58AUAGCCAGUUGUAGAUCGUCGCsiRNA22ShortStack
pvu-b1.0r1-40486Phaseolus vulgaris (Common Bean) 1.0Chr11:26703801-26704366-3441.90CAAGUUGUGGAAUCAUGAUGGAsiRNA22ShortStack
pvu-b1.0r1-40487Phaseolus vulgaris (Common Bean) 1.0Chr11:26705649-26706297-4862.68CAUUGGUUGCAAGAGGUCGUCAsiRNA22ShortStack
pvu-b1.0r1-41109Phaseolus vulgaris (Common Bean) 1.0Chr11:44181978-44182260+1,7109.42UGCCACCCCCUCCAGACAGAUAsiRNA22ShortStack
pvu-b1.0r1-41334Phaseolus vulgaris (Common Bean) 1.0Chr11:46375744-46375763-1130.62UCAUGACCUCUCUUGUAUGACUsiRNA22ShortStack
pvu-b1.0r1-41455Phaseolus vulgaris (Common Bean) 1.0Chr11:47563269-47563315.1050.58UUCGUGAUCAUGUGAAGAAAGsiRNA22ShortStack
pvu-b1.0r1-41719Phaseolus vulgaris (Common Bean) 1.0scaffold_198:3795-3904.3271.80AUUUAGAAUCCUGUUAUUUGCGGCsiRNA22ShortStack