het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Phaseolus vulgaris (Common Bean) genome build 1.0 (pvu-b1.0)

Version v1.0 of Phaseolus vulgaris cv. BAT93 from Phytozome

Locus type


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Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
pvu-b1.0r1-11Phaseolus vulgaris (Common Bean) 1.0Chr01:253195-253292-6,88237.91UUGGCAUUCUGUCCACCUCCmiR394siRNA20ShortStack
pvu-b1.0r1-988Phaseolus vulgaris (Common Bean) 1.0Chr01:7018315-7018792-1,7219.48AACCAGGCUCUGAUACCAUGmiR1511siRNA20ShortStack
pvu-b1.0r1-4719Phaseolus vulgaris (Common Bean) 1.0Chr02:4511025-4511045+631,9723,481.03GGUAGUUUGAUCGUAGAAUUsiRNA20ShortStack
pvu-b1.0r1-8416Phaseolus vulgaris (Common Bean) 1.0Chr02:46472075-46472530+4,19323.10AACCAGGCUCUGAUACCAUGmiR1511siRNA20ShortStack
pvu-b1.0r1-9952Phaseolus vulgaris (Common Bean) 1.0Chr03:8287520-8287580+7,14439.35ACCAGGCUCUGAUACCAUGAmiR1511siRNA20ShortStack
pvu-b1.0r1-22220Phaseolus vulgaris (Common Bean) 1.0Chr06:31397149-31397744-2,81415.50UUGGCAUUCUGUCCACCUCCmiR394siRNA20ShortStack
pvu-b1.0r1-24027Phaseolus vulgaris (Common Bean) 1.0Chr07:12530353-12530375-1871.03GUCCUUAACACUGAAUUCAGsiRNA20ShortStack
pvu-b1.0r1-28333Phaseolus vulgaris (Common Bean) 1.0Chr08:13834605-13835030+5,31629.28UAAUCUGCAUCCUGAGGUUUmiR2111siRNA20ShortStack
MIRNOV11-2Phaseolus vulgaris (Common Bean) 1.0Chr08:13834864-13834928+2,57314.17UAAUCUGCAUCCUGAGGUUUmiR2111siRNA20Formey_et_al_2015
MIRNOV13-2Phaseolus vulgaris (Common Bean) 1.0Chr08:13834864-13834928+2,57314.17UAAUCUGCAUCCUGAGGUUUmiR2111siRNA20Formey_et_al_2015
pvu-b1.0r1-31437Phaseolus vulgaris (Common Bean) 1.0Chr09:4141652-4141791+2,54013.99UUGGCAUUCUGUCCACCUCCmiR394siRNA20ShortStack
pvu-b1.0r1-41385Phaseolus vulgaris (Common Bean) 1.0Chr11:46762212-46762350+2,29612.65AACCAGGCUCUGAUACCAUGmiR1511siRNA20ShortStack