het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Citrus sinensis (Sweet Orange) genome build 2 (csi-b2)

Version v2 of Citrus sinensis cv. Valencia from The Citrus sinensis Annotation Project

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
csi-MIR1515a-m1Citrus sinensis (Sweet Orange) 2chr1:22740553-22740726+6,21214.59UCAUUUUUGCGUGCAAUGAUCCmiR1515siRNA22miRBase22-BestBlastHit
csi-MIR1515b-m1Citrus sinensis (Sweet Orange) 2chr1:22740553-22740726+6,21214.59UCAUUUUUGCGUGCAAUGAUCCmiR1515siRNA22miRBase22-BestBlastHit
csi-MIR1515a-m2Citrus sinensis (Sweet Orange) 2chr1:22746027-22746200+6,44415.14UCAUUUUUGCGUGCAAUGAUCCmiR1515siRNA22miRBase22-BestBlastHit
csi-MIR1515b-m2Citrus sinensis (Sweet Orange) 2chr1:22746027-22746200+6,44415.14UCAUUUUUGCGUGCAAUGAUCCmiR1515siRNA22miRBase22-BestBlastHit
csi-MIR167c-m1Citrus sinensis (Sweet Orange) 2chr2:8234557-8234897+168,211395.09UGAAGCUGCCAGCAUGAUCUGGmiR167siRNA22miRBase22-BestBlastHit
csi-MIR169h-m1Citrus sinensis (Sweet Orange) 2chr2:11005784-11005945+1270.30UAGCCAAGGAUGACUUGCCUGCmiR169siRNA22miRBase22-BestBlastHit
csi-MIR169i-m1Citrus sinensis (Sweet Orange) 2chr2:11046548-11046703+110.03UAGCCAAGGAUGACUUGCCUGAmiR169siRNA22miRBase22-BestBlastHit
csi-MIR169a-m1Citrus sinensis (Sweet Orange) 2chr4:2089053-2089802-910.21UAGAGCCAAGAAUGACUUGCCGmiR169siRNA22miRBase22-BestBlastHit
csi-MIR477b-m1Citrus sinensis (Sweet Orange) 2chr7:9419658-9419795+9,68322.74UUAGGGCAGAGUGAUCGACUmiR477siRNA22miRBase22-BestBlastHit