het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Citrus sinensis (Sweet Orange) genome build 2 (csi-b2)

Version v2 of Citrus sinensis cv. Valencia from The Citrus sinensis Annotation Project

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
csi-MIR396c-m1Citrus sinensis (Sweet Orange) 2chr1:15269166-15269326-7,95618.69UUCAAGAAAUCUGUGGGAAGmiR396MIRNAmiRBase22-BestBlastHit
csi-MIR172a-m1Citrus sinensis (Sweet Orange) 2chr1:27308844-27309005-60,652142.46AGAAUCUUGAUGAUGCUGCAAmiR172MIRNAmiRBase22-BestBlastHit
csi-MIR171f-m1Citrus sinensis (Sweet Orange) 2chr1:28276647-28276804+8,83320.75UGAUUGAGCCGUGCCAAUAUCmiR171MIRNAmiRBase22-BestBlastHit
csi-MIR399c-m1Citrus sinensis (Sweet Orange) 2chr2:2303820-2303968-2620.62GUGCAGUCCUCCUUUGGCGUGmiR399MIRNAmiRBase22-BestBlastHit
csi-MIR399e-m1Citrus sinensis (Sweet Orange) 2chr2:2305438-2305568+8842.08UGCCAAAGGAGAUUUGCCCGGmiR399MIRNAmiRBase22-BestBlastHit
csi-MIR397-m1Citrus sinensis (Sweet Orange) 2chr2:4101073-4101228-130,656306.89UCAUUGAGUGCAGCGUUGAUGmiR397MIRNAmiRBase22-BestBlastHit
csi-MIR12106-m1Citrus sinensis (Sweet Orange) 2chr2:4660119-4660218-2,0044.71UGGCGCAGCUGUCCUAAACGGmiR12106MIRNAmiRBase22-BestBlastHit
csi-MIR160b-m1Citrus sinensis (Sweet Orange) 2chr2:7768976-7769118+124,804293.14GCGUACGAGGAGCCAAGCAUAmiR160MIRNAmiRBase22-BestBlastHit
csi-MIR482e-m1Citrus sinensis (Sweet Orange) 2chr2:9926601-9926763+4,392,51610,317.15GGUCAUGGGAGGAUUGGCGAAAmiR482MIRNAmiRBase22-BestBlastHit
csi-MIR482c-m1Citrus sinensis (Sweet Orange) 2chr2:9926840-9926935+19,23545.18UUCCCUAGUCCCCCUAUUCCUAmiR482MIRNAmiRBase22-BestBlastHit
csi-MIR482b-m1Citrus sinensis (Sweet Orange) 2chr2:9932116-9932224+73,395172.39AAUGGGAGGCUUGGCAAGAAGmiR482MIRNAmiRBase22-BestBlastHit
csi-MIR482a-m1Citrus sinensis (Sweet Orange) 2chr2:9941005-9941133+80,695189.54AGUGGGAGCGUGGGGUAAGAAGmiR482MIRNAmiRBase22-BestBlastHit
csi-MIR482g-m1Citrus sinensis (Sweet Orange) 2chr2:9941005-9941133+80,695189.54AGUGGGAGCGUGGGGUAAGAAGmiR482MIRNAmiRBase22-BestBlastHit
csi-MIR482a-m2Citrus sinensis (Sweet Orange) 2chr2:9942535-9942663+81,385191.16AGUGGGAGCGUGGGGUAAGAAGmiR482MIRNAmiRBase22-BestBlastHit
csi-MIR482g-m2Citrus sinensis (Sweet Orange) 2chr2:9942535-9942663+81,385191.16AGUGGGAGCGUGGGGUAAGAAGmiR482MIRNAmiRBase22-BestBlastHit
csi-MIR482f-m1Citrus sinensis (Sweet Orange) 2chr2:9962423-9962516+48,647114.26GAUGGGUGAGUUGGGAAAAUAmiR482MIRNAmiRBase22-BestBlastHit
csi-MIR156j-m1Citrus sinensis (Sweet Orange) 2chr2:10333429-10333540+11,17526.25AGCUGCUGACUCGUUGGUUCAmiR319MIRNAmiRBase22-BestBlastHit
csi-MIR169e-m1Citrus sinensis (Sweet Orange) 2chr2:11051229-11051387+5641.33AGGCAGUCUCCUUGGCUAAGmiR169MIRNAmiRBase22-BestBlastHit
csi-MIR535c-m1Citrus sinensis (Sweet Orange) 2chr2:14867757-14867897-563,3721,323.25UGACAAUGAGAGAGAGCACACmiR535MIRNAmiRBase22-BestBlastHit
csi-MIR171e-m1Citrus sinensis (Sweet Orange) 2chr2:18268041-18268184+1,3143.09UUGAGCCGCGUCAAUAUCUCCmiR171MIRNAmiRBase22-BestBlastHit
csi-MIR171g-m1Citrus sinensis (Sweet Orange) 2chr2:18268041-18268184+1,3143.09UUGAGCCGCGUCAAUAUCUCCmiR171MIRNAmiRBase22-BestBlastHit
csi-MIR171h-m1Citrus sinensis (Sweet Orange) 2chr2:24734609-24734707+5301.25UGAUUGAGCCGUGCCAAUAUCmiR171MIRNAmiRBase22-BestBlastHit
csi-MIR398b-m1Citrus sinensis (Sweet Orange) 2chr2:28955947-28956068+484,3391,137.62CCGCAGGGGCGACAUGAGAUCmiR398MIRNAmiRBase22-BestBlastHit
csi-MIR166f-m1Citrus sinensis (Sweet Orange) 2chr3:4881876-4882028+2,005,8184,711.27UCGGACCAGGCUUCAUUCCCUmiR166MIRNAmiRBase22-BestBlastHit
csi-MIR166b-m1Citrus sinensis (Sweet Orange) 2chr3:4882037-4882186+1,398,2513,284.22UCUCGGACCAGGCUUCAUUCCmiR166MIRNAmiRBase22-BestBlastHit
csi-MIR12105-m1Citrus sinensis (Sweet Orange) 2chr3:13420776-13420977-39,19892.07UUUCUUGAGACAAAACAUGCAUCmiR12105MIRNAmiRBase22-BestBlastHit
csi-MIR167a-m1Citrus sinensis (Sweet Orange) 2chr3:14950367-14950469+2,864,6596,728.52UGAAGCUGCCAGCAUGAUCUGAmiR167MIRNAmiRBase22-BestBlastHit
csi-MIR164c-m1Citrus sinensis (Sweet Orange) 2chr3:18767350-18767491+50,612118.88UGGAGAAGCAGGGCACGUGCAmiR164MIRNAmiRBase22-BestBlastHit
csi-MIR9560-m1Citrus sinensis (Sweet Orange) 2chr3:18988992-18989094-23,51055.22ACAGGAGGUGGAACAAAUAUGAAAmiR9560MIRNAmiRBase22-BestBlastHit
csi-MIR171d-m1Citrus sinensis (Sweet Orange) 2chr3:27931456-27931594-6461.52UGAUUGAGCCGUGCCAAUAUCmiR171MIRNAmiRBase22-BestBlastHit
csi-MIR394a-m1Citrus sinensis (Sweet Orange) 2chr3:27990522-27990668+3,7778.87UUGGCAUUCUGUCCACCUCCmiR394MIRNAmiRBase22-BestBlastHit
csi-MIR156a-m1Citrus sinensis (Sweet Orange) 2chr4:392462-392564+4,074,9869,571.34UGACAGAAGAGAGUGAGCACmiR156MIRNAmiRBase22-BestBlastHit
csi-MIR12107-m1Citrus sinensis (Sweet Orange) 2chr4:1005818-1005978+15,87337.28CUGAUGAGAGAGCGAAUGAUAmiR12107MIRNAmiRBase22-BestBlastHit
csi-MIR396b-m1Citrus sinensis (Sweet Orange) 2chr4:3335321-3335454+105,457247.70UUCCACAGCUUUCUUGAACUGmiR396MIRNAmiRBase22-BestBlastHit
csi-MIR396f-m1Citrus sinensis (Sweet Orange) 2chr4:3340888-3341059-82,941194.81GCUCAAGAAAGCUGUGGGAGAmiR396MIRNAmiRBase22-BestBlastHit
csi-MIR156c-m1Citrus sinensis (Sweet Orange) 2chr4:3430774-3430922-9,37122.01UGACAGAAGAGAGUGAGCACmiR156MIRNAmiRBase22-BestBlastHit
csi-MIR156f-m1Citrus sinensis (Sweet Orange) 2chr4:5740143-5740288-43,615102.44AUGACAGAAGAGAGAGAGUACmiR156MIRNAmiRBase22-BestBlastHit
csi-MIR3951b-m1Citrus sinensis (Sweet Orange) 2chr4:7873571-7873696-2,2745.34UUUCUCUUAUCUUUUAUCUGUGmiR3951MIRNAmiRBase22-BestBlastHit
csi-MIR166a-m1Citrus sinensis (Sweet Orange) 2chr5:444262-444463-41,21096.79UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase22-BestBlastHit
csi-MIR477e-m1Citrus sinensis (Sweet Orange) 2chr5:1063882-1063974-3,7608.83UGAGGUUCUUGGGGAGAGUAGmiR477MIRNAmiRBase22-BestBlastHit
csi-MIR477d-m1Citrus sinensis (Sweet Orange) 2chr5:1064087-1064188-10,82325.42UGAGGCCGUUGGGGAGAGUGGmiR477MIRNAmiRBase22-BestBlastHit
csi-MIR399b-m1Citrus sinensis (Sweet Orange) 2chr5:7022847-7023016-2,6446.21UGCCAAAGGAGAGUUGCCCUAmiR399MIRNAmiRBase22-BestBlastHit
csi-MIR12111-m1Citrus sinensis (Sweet Orange) 2chr5:8697516-8697665-1,1772.77GAAAAACUUAGGUGGGAUAGUGUGmiR12111MIRNAmiRBase22-BestBlastHit
csi-MIR166c-m1Citrus sinensis (Sweet Orange) 2chr5:32144969-32145106+1,770,9964,159.72UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase22-BestBlastHit
csi-MIR167d-m1Citrus sinensis (Sweet Orange) 2chr5:32490681-32490767-74,274174.46UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAmiRBase22-BestBlastHit
csi-MIR167e-m1Citrus sinensis (Sweet Orange) 2chr5:32493939-32494105-37,08987.12UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAmiRBase22-BestBlastHit
csi-MIR2111-m1Citrus sinensis (Sweet Orange) 2chr6:8975727-8975834-1,1692.75UAAUCUGCAUCCUGAGGUUUGmiR2111MIRNAmiRBase22-BestBlastHit
csi-MIR390a-m1Citrus sinensis (Sweet Orange) 2chr6:11042434-11042589+199,915469.56AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAmiRBase22-BestBlastHit
csi-MIR164a-m1Citrus sinensis (Sweet Orange) 2chr6:11297797-11298035+231,834544.53UGGAGAAGCAGGGCACGUGCAmiR164MIRNAmiRBase22-BestBlastHit
csi-MIR160c-m1Citrus sinensis (Sweet Orange) 2chr6:12800049-12800152-1,9814.65UGCCUGGCUCCCUGUAUGCUUmiR160MIRNAmiRBase22-BestBlastHit
csi-MIR156g-m1Citrus sinensis (Sweet Orange) 2chr6:18417813-18417954-6,430,44615,103.85UUGACGGAAGAUAGAGAGCACmiR156MIRNAmiRBase22-BestBlastHit
csi-MIR3627c-m1Citrus sinensis (Sweet Orange) 2chr6:19942865-19942987+61,028143.34UCGCAGGGGAGAUGGGACCAACmiR3627MIRNAmiRBase22-BestBlastHit
csi-MIR3627b-m1Citrus sinensis (Sweet Orange) 2chr6:19948304-19948568+17,88742.01UUGUCGCAGGAGCGGUGGCACCmiR3627MIRNAmiRBase22-BestBlastHit
csi-MIR2275a-m1Citrus sinensis (Sweet Orange) 2chr6:20310988-20311120+940.22UUUAGUUUCCUCCAAUAUCUUAmiR2275MIRNAmiRBase22-BestBlastHit
csi-MIR169k-m1Citrus sinensis (Sweet Orange) 2chr6:20613031-20613212+2680.63CAGCCAAGGAUGACUUGCCGGmiR169MIRNAmiRBase22-BestBlastHit
csi-MIR536-m1Citrus sinensis (Sweet Orange) 2chr7:1201524-1201659-1,6073.78CGCACCCCAGCGUGGAACCAUCmiR536MIRNAmiRBase22-BestBlastHit
csi-MIR398a-m1Citrus sinensis (Sweet Orange) 2chr7:1333347-1333571+32,05675.29GGAGUGAACCUGAGAACAGAGGmiR398MIRNAmiRBase22-BestBlastHit
csi-MIR156b-m1Citrus sinensis (Sweet Orange) 2chr7:3637037-3637179+6,032,75914,169.76UGACAGAAGAGAGUGAGCACmiR156MIRNAmiRBase22-BestBlastHit
csi-MIR169n-m1Citrus sinensis (Sweet Orange) 2chr7:4557016-4557094-43,699102.64CAGCCAAGGAUGACUUGCCGGmiR169MIRNAmiRBase22-BestBlastHit
csi-MIR169o-m1Citrus sinensis (Sweet Orange) 2chr7:4557214-4557309-8,50919.99CAGCCAAGGAUGACUUGCCGGmiR169MIRNAmiRBase22-BestBlastHit
csi-MIR169r-m1Citrus sinensis (Sweet Orange) 2chr7:4557214-4557309-8,50919.99CAGCCAAGGAUGACUUGCCGGmiR169MIRNAmiRBase22-BestBlastHit
csi-MIR477c-m1Citrus sinensis (Sweet Orange) 2chr7:9419854-9420012+13,68132.13ACUCUCCCUCAAGGGCUUCGCmiR477MIRNAmiRBase22-BestBlastHit
csi-MIR477a-m1Citrus sinensis (Sweet Orange) 2chr7:15360822-15360961-102,716241.26ACCUCCCUCGAAGGCUUCCAAmiR477MIRNAmiRBase22-BestBlastHit
csi-MIR12109-m1Citrus sinensis (Sweet Orange) 2chr7:23942188-23942308+8952.10CUGCAGAUUUGUGCAUUAAGCUGCmiR12109MIRNAmiRBase22-BestBlastHit
csi-MIR172b-m1Citrus sinensis (Sweet Orange) 2chr7:24626933-24627123+395,820929.70AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAmiRBase22-BestBlastHit
csi-MIR156e-m1Citrus sinensis (Sweet Orange) 2chr7:24974083-24974229-500,8551,176.41GUGACAGAAGAUAGAGAGCGCmiR156MIRNAmiRBase22-BestBlastHit
csi-MIR160a-m1Citrus sinensis (Sweet Orange) 2chr7:28082700-28082842-32,21175.66GCGUAUGAGGAGCCAUGCAUAmiR160MIRNAmiRBase22-BestBlastHit
csi-MIR393c-m1Citrus sinensis (Sweet Orange) 2chr7:31958695-31958837+8692.04AUCAUGCUAUCCCUUUGGAUUmiR393MIRNAmiRBase22-BestBlastHit
csi-MIR3952b-m1Citrus sinensis (Sweet Orange) 2chr8:15996321-15996520+151,792356.53GCUGUAGAAAGGCCCCUCAACmiR3952MIRNAmiRBase22-BestBlastHit
csi-MIR530b-m1Citrus sinensis (Sweet Orange) 2chr8:18975510-18975663-2,0564.83UGCAUUUGCACCUGCAUCUUGmiR530MIRNAmiRBase22-BestBlastHit
csi-MIR530a-m1Citrus sinensis (Sweet Orange) 2chr8:18991478-18991598+1,2983.05UGCAUUUGCACCUGCACCUUGmiR530MIRNAmiRBase22-BestBlastHit
csi-MIR391-m1Citrus sinensis (Sweet Orange) 2chr8:19875141-19875281-1,0152.38UGCAGGUGAGAUGAUACCGUCAmiR391MIRNAmiRBase22-BestBlastHit
csi-MIR172d-m1Citrus sinensis (Sweet Orange) 2chr8:21299369-21299527+3,7098.71GCGGCAUCAUCAAGAUUCACAmiR172MIRNAmiRBase22-BestBlastHit
csi-MIR390b-m1Citrus sinensis (Sweet Orange) 2chr8:22526276-22526434+29,49069.27AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAmiRBase22-BestBlastHit
csi-MIR169m-m1Citrus sinensis (Sweet Orange) 2chr9:1732704-1732880+1,9094.48CAGCCAAGGAUGACUUGCCGGmiR169MIRNAmiRBase22-BestBlastHit
csi-MIR167b-m1Citrus sinensis (Sweet Orange) 2chr9:4850192-4850314+421,182989.27UGAAGCUGCCAGCAUGAUCUUAmiR167MIRNAmiRBase22-BestBlastHit
csi-MIR166g-m1Citrus sinensis (Sweet Orange) 2chr9:5710411-5710544-40,21594.46UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase22-BestBlastHit
csi-MIR3954b-m1Citrus sinensis (Sweet Orange) 2chr9:5824568-5824804-6,429,01315,100.48UUGGACAGAGAAAUCACGGUCAmiR3954MIRNAmiRBase22-BestBlastHit
csi-MIR399d-m1Citrus sinensis (Sweet Orange) 2chr9:15383372-15383501+2,9236.87GGGCACCUCUUACUUGGCAUGmiR399MIRNAmiRBase22-BestBlastHit
csi-MIR393b-m1Citrus sinensis (Sweet Orange) 2chr9:16703325-16703498-22,92753.85UCAUGCGAUCCCUUCGGAAUUmiR393MIRNAmiRBase22-BestBlastHit
csi-MIR12110-m1Citrus sinensis (Sweet Orange) 2chr9:17616613-17616716-3,4068.00CCCGAGUCACAGCUCCCUGGACmiR12110MIRNAmiRBase22-BestBlastHit
csi-MIR166e-m1Citrus sinensis (Sweet Orange) 2chrUn:6490904-6491080+204,326479.92UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase22-BestBlastHit
csi-MIR171b-m1Citrus sinensis (Sweet Orange) 2chrUn:20985544-20985711+430,1901,010.43UGUGAUAUUGGUUCGGCUCAUCmiR171MIRNAmiRBase22-BestBlastHit
csi-MIR166j-m1Citrus sinensis (Sweet Orange) 2chrUn:22424069-22424201+47,587111.77UUGGACCAGGCUUCAUUCCUCmiR166MIRNAmiRBase22-BestBlastHit
csi-MIR166k-m1Citrus sinensis (Sweet Orange) 2chrUn:22424305-22424419+31,30673.53UUGGACCAGGCUUCAUUCCACmiR166MIRNAmiRBase22-BestBlastHit
csi-MIR408-m1Citrus sinensis (Sweet Orange) 2chrUn:28033750-28033902-486,0141,141.55ACGGGGAACAGGCAGAGCAUGmiR408MIRNAmiRBase22-BestBlastHit
csi-MIR12105-m2Citrus sinensis (Sweet Orange) 2chrUn:33972431-33972632+39,21792.11UUUCUUGAGACAAAACAUGCAUCmiR12105MIRNAmiRBase22-BestBlastHit
csi-MIR166d-m1Citrus sinensis (Sweet Orange) 2chrUn:38823673-38823800+282,628663.84UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase22-BestBlastHit
csi-MIR171c-m1Citrus sinensis (Sweet Orange) 2chrUn:39530673-39530810+23,88656.10UGUUGGAACGGCUCAAUCAAAmiR171MIRNAmiRBase22-BestBlastHit
csi-MIR2275b-m1Citrus sinensis (Sweet Orange) 2chrUn:49594681-49594864+1020.24UUUAGUUUCCUCCAAUAUCUUAmiR2275MIRNAmiRBase22-BestBlastHit
csi-MIR168-m1Citrus sinensis (Sweet Orange) 2chrUn:55219633-55219809+995,7842,338.90UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAmiRBase22-BestBlastHit
csi-MIR162-m1Citrus sinensis (Sweet Orange) 2chrUn:57376004-57376203+21,21249.82UCGAUAAACCUCUGCAUCCAGmiR162MIRNAmiRBase22-BestBlastHit
csi-MIR171e-m2Citrus sinensis (Sweet Orange) 2chrUn:86431505-86431648-1,4043.30UUGAGCCGCGUCAAUAUCUCCmiR171MIRNAmiRBase22-BestBlastHit
csi-MIR171g-m2Citrus sinensis (Sweet Orange) 2chrUn:86431505-86431648-1,4043.30UUGAGCCGCGUCAAUAUCUCCmiR171MIRNAmiRBase22-BestBlastHit