het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Manihot esculenta (Cassava) genome build 6 (mes-b6)

Version v6 of Manihot esculenta cv. AM560-2 from Phytozome

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
mes-MIR172a-m1Manihot esculenta (Cassava) 6Chromosome01:27419978-27420154-7141.89AGAAUCUUGAUGAUGCUGCAUmiR172siRNA21miRBase22-BestBlastHit
mes-MIR403b-m1Manihot esculenta (Cassava) 6Chromosome01:31375869-31375959-1310.35UCAGGUUUGUGCGUGAAUCUAmiR403siRNA21miRBase22-BestBlastHit
mes-MIR159d-m1Manihot esculenta (Cassava) 6Chromosome01:32678258-32678474-8312.20UUUGCAUGACCUGGGAGACGUmiR159siRNA21miRBase22-BestBlastHit
mes-MIR169c-m1Manihot esculenta (Cassava) 6Chromosome02:3694363-3694459+2810.75CAGCCAAGGAUGACUUGCCGGmiR169siRNA21miRBase22-BestBlastHit
mes-MIR477f-m1Manihot esculenta (Cassava) 6Chromosome02:5152052-5152160.200.05AUCUCCCUCAAAGGCUUCCAAmiR477siRNA21miRBase22-BestBlastHit
mes-MIR167a-m1Manihot esculenta (Cassava) 6Chromosome03:8398280-8398534-205,499544.78UGAAGCUGCCAGCAUGAUCUGmiR167siRNA21miRBase22-BestBlastHit
mes-MIR159c-m1Manihot esculenta (Cassava) 6Chromosome05:1982350-1982564-2490.66UUUGCAUGACCUGGGAGACGUmiR159siRNA21miRBase22-BestBlastHit
mes-MIR169f-m1Manihot esculenta (Cassava) 6Chromosome05:9020843-9020945+1,4973.97UAGCCAAGGAUGACUUGCCGGmiR169siRNA21miRBase22-BestBlastHit
mes-MIR319h-m1Manihot esculenta (Cassava) 6Chromosome07:26615856-26616035-4,04510.72CUUGGACUGAAGGGAGCUCCCCmiR319siRNA21miRBase22-BestBlastHit
mes-MIR319g-m1Manihot esculenta (Cassava) 6Chromosome10:313670-313894+1,5224.04CUUGGACUGAAGGGAGCUCCUmiR319siRNA21miRBase22-BestBlastHit
mes-MIR172d-m1Manihot esculenta (Cassava) 6Chromosome10:4792728-4792858-34,82892.33AGAAUCUUGAUGAUGCUGCAUmiR172siRNA21miRBase22-BestBlastHit
mes-MIR169s-m1Manihot esculenta (Cassava) 6Chromosome10:19668466-19668556.390.10CACUUGUAUACCAGCAACCCUmiR169siRNA21miRBase22-BestBlastHit
mes-MIR169u-m1Manihot esculenta (Cassava) 6Chromosome10:19683501-19683602.410.11UAGCCAAGGAUGACUUGCCUmiR169siRNA21miRBase22-BestBlastHit
mes-MIR169p-m1Manihot esculenta (Cassava) 6Chromosome10:19692119-19692214-70.02UAGCCAAGGAUGACUUGCAUGmiR169siRNA21miRBase22-BestBlastHit
mes-MIR169x-m3Manihot esculenta (Cassava) 6Chromosome10:19710755-19710849.320.09UAGCCAAGGAUGACUUGCCCGmiR169siRNA21miRBase22-BestBlastHit
mes-MIR169z-m3Manihot esculenta (Cassava) 6Chromosome10:19710755-19710849.320.09UAGCCAAGGAUGACUUGCCCGmiR169siRNA21miRBase22-BestBlastHit
mes-MIR319e-m1Manihot esculenta (Cassava) 6Chromosome14:12044746-12044919-120,278318.86UUGGACUGAAGGGAGCUCCCUmiR319siRNA21miRBase22-BestBlastHit
mes-MIR169a-m1Manihot esculenta (Cassava) 6Chromosome14:19330079-19330168+7421.97CAGCCAAGGAUGACUUGCCGGmiR169siRNA21miRBase22-BestBlastHit
mes-MIR169g-m1Manihot esculenta (Cassava) 6Chromosome15:8413653-8413737+1180.31UGGUUCUUUGUGCUCUGCAUGsiRNA21miRBase22-BestBlastHit
mes-MIR171b-m1Manihot esculenta (Cassava) 6Chromosome16:665785-665874+11,10229.43UGAUUGAGCCGUGCCAAUAUCmiR171siRNA21miRBase22-BestBlastHit
mes-MIR399d-m1Manihot esculenta (Cassava) 6Chromosome16:4698645-4698736-2670.71UGCCAAAGGAGAUUUGCCCGGmiR399siRNA21miRBase22-BestBlastHit
mes-MIR399c-m1Manihot esculenta (Cassava) 6Chromosome16:4700990-4701081+20.01AGUUCUGUAAGUGGCUGCCUAmiR399siRNA21miRBase22-BestBlastHit
mes-MIR399e-m1Manihot esculenta (Cassava) 6Chromosome16:4707458-4707549-5361.42UGCCAAAGGAGAUUUGCUCGGmiR399siRNA21miRBase22-BestBlastHit
mes-MIR399b-m1Manihot esculenta (Cassava) 6Chromosome16:4710132-4710223+1830.49UGCCAAAGGAGAUUUGCCCGGmiR399siRNA21miRBase22-BestBlastHit
mes-MIR169d-m1Manihot esculenta (Cassava) 6Chromosome16:28694336-28694432-5,50614.60AGCCAAGGAUGACUUGCCGGmiR169siRNA21miRBase22-BestBlastHit
mes-MIR171c-m1Manihot esculenta (Cassava) 6Chromosome17:13210852-13210935+1,6084.26AGAUAUUGGUGCGGUUCAAUCmiR171siRNA21miRBase22-BestBlastHit
mes-MIR390b-m1Manihot esculenta (Cassava) 6Chromosome18:13374956-13375023-2,1755.77AAGCUCAGGAGGGAUAGCGCCmiR390siRNA21miRBase22-BestBlastHit
mes-MIR319c-m1Manihot esculenta (Cassava) 6Scaffold01626:7851-8084+5,54514.70UUGGACUGAAGGGAGCUCCCUmiR319siRNA21miRBase22-BestBlastHit