Data from Lunardon et al. (2020)

Annotations viewer

Genome

Manihot esculenta (Cassava) genome build 6 (mes-b6)

Version v6 of Manihot esculenta cv. AM560-2 from Phytozome

Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
mes-MIR319f-m1	Manihot esculenta (Cassava) 6	Chromosome01:2036310-2036485	-	936	2.48	AUUGGACUGAAGGGAGCUCC	miR319	OtherRNA	miRBase22-BestBlastHit
mes-MIR396f-m1	Manihot esculenta (Cassava) 6	Chromosome04:24511566-24511688	+	3,760	9.97	UUCAAGAAAGCUGUGGGAGA	miR396	OtherRNA	miRBase22-BestBlastHit
mes-MIR828b-m1	Manihot esculenta (Cassava) 6	Chromosome05:1522647-1522820	.	30	0.08	UCUUGCUCAAAUGAGUAUUCCA	miR828	OtherRNA	miRBase22-BestBlastHit
mes-MIR396b-m1	Manihot esculenta (Cassava) 6	Chromosome06:13891177-13891306	+	13,144	34.85	UUCCACAGCUUUCUUGAACUG	miR396	OtherRNA	miRBase22-BestBlastHit
mes-MIR169x-m1	Manihot esculenta (Cassava) 6	Chromosome10:19664798-19664892	+	1	0.00	UUUGAUCUUGUUUGCUGUUAGAACU	miR169	OtherRNA	miRBase22-BestBlastHit
mes-MIR169z-m1	Manihot esculenta (Cassava) 6	Chromosome10:19664798-19664892	+	1	0.00	UUUGAUCUUGUUUGCUGUUAGAACU	miR169	OtherRNA	miRBase22-BestBlastHit
mes-MIR169ad-m1	Manihot esculenta (Cassava) 6	Chromosome10:19672651-19672799	-	1,876	4.97	UCACAGGCUCUUAUUUUUCAUG	miR169	OtherRNA	miRBase22-BestBlastHit
mes-MIR169r-m1	Manihot esculenta (Cassava) 6	Chromosome10:19679866-19679960	+	87	0.23	GGCAAUCAUCCUUGGUUAUG		OtherRNA	miRBase22-BestBlastHit
mes-MIR477h-m1	Manihot esculenta (Cassava) 6	Chromosome12:29207658-29207800	+	7,929	21.02	ACUCUCCCUCAAGGGCUUCAG	miR477	OtherRNA	miRBase22-BestBlastHit
mes-MIR396a-m1	Manihot esculenta (Cassava) 6	Chromosome14:10010802-10010955	+	321,670	852.75	UUCCACAGCUUUCUUGAACUG	miR396	OtherRNA	miRBase22-BestBlastHit
mes-MIR399a-m1	Manihot esculenta (Cassava) 6	Chromosome17:19726774-19726894	+	464	1.23	GGCGACUCUCCCUUGGCAAA	miR399	OtherRNA	miRBase22-BestBlastHit