het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Brachypodium distachyon (Stiff brome) genome build 1.0 (bdi-b1.0)

Version v1.0 of Brachypodium distachyon cv. Bd21 from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bdi-MIR7784b-m1Brachypodium distachyon (Stiff brome) 1.01:8415427-8415549+4061.16GUACAUGAACUUAUAAGACGAGUAmiR7784siRNA24miRBase21-BestBlastHit
bdi-MIR7725b-m1Brachypodium distachyon (Stiff brome) 1.01:9582818-9582962+8132.32CAAAUAAGAGGAGACGAGACAUAGmiR7725siRNA24miRBase21-BestBlastHit
bdi-MIR5049-m1Brachypodium distachyon (Stiff brome) 1.01:9873496-9873584.3,2779.36CAAGUAAUAUGGAUCGGAGGAAGUmiR5049siRNA24miRBase21-BestBlastHit
bdi-MIR7758-m1Brachypodium distachyon (Stiff brome) 1.01:19580903-19581367+2,1626.18UAGCGGUCAACUAACUGUAGUGGCmiR7758siRNA24miRBase21-BestBlastHit
bdi-MIR7729a-m1Brachypodium distachyon (Stiff brome) 1.01:19867091-19867180.380.11UGUUUUCAUAGGCCAUGUAGAGCmiR7729siRNA24miRBase21-BestBlastHit
bdi-MIR7714-m1Brachypodium distachyon (Stiff brome) 1.01:21292473-21292559-2,5437.26CUAAUAUGUAUCGAAGGGAGUAGCmiR7714siRNA24miRBase21-BestBlastHit
bdi-MIR5062a-m1Brachypodium distachyon (Stiff brome) 1.01:24013988-24014136.750.21UGAACCUUGGGGAAAAGCCGCCUmiR5062siRNA24miRBase21-BestBlastHit
bdi-MIR7717a-m1Brachypodium distachyon (Stiff brome) 1.01:28244716-28244829-2,1526.15GAUGGAUACGAUUGUCGACUGAGAmiR7717siRNA24miRBase21-BestBlastHit
bdi-MIR5063-m1Brachypodium distachyon (Stiff brome) 1.01:34157655-34157732.100.03UGCAAGAAGACCGGGCAUUACAAGmiR5063siRNA24miRBase21-BestBlastHit
bdi-MIR5174d-m1Brachypodium distachyon (Stiff brome) 1.01:36001972-36002075-2,9418.40AUAAAGAUUGGCACGGAUUUGAACmiR5174siRNA24miRBase21-BestBlastHit
bdi-MIR7733-m1Brachypodium distachyon (Stiff brome) 1.01:38847604-38848027+5,56615.90AACGGACGUCUAACUCACUGCAGCmiR7733siRNA24miRBase21-BestBlastHit
bdi-MIR7779-m1Brachypodium distachyon (Stiff brome) 1.01:38848227-38848545+2,6637.61GAGGUCAUUGUCAGACAUGGGAAGmiR7779siRNA24miRBase21-BestBlastHit
bdi-MIR7718-m1Brachypodium distachyon (Stiff brome) 1.01:40295515-40296069+7,73722.10AAAGAUUGUUGCUGCCAUUAACUGsiRNA24miRBase21-BestBlastHit
bdi-MIR7739-m1Brachypodium distachyon (Stiff brome) 1.01:41016724-41016952+3,99311.41AGAUGCGUCGAAGCGGACUGGAUCmiR7739siRNA24miRBase21-BestBlastHit
bdi-MIR5174a-m1Brachypodium distachyon (Stiff brome) 1.01:45787966-45788131.2,0665.90AUAAAGAUUGGCACGGAUUUAAACmiR5174siRNA24miRBase21-BestBlastHit
bdi-MIR5171a-m1Brachypodium distachyon (Stiff brome) 1.01:46051254-46051407.680.19AUUUCGGCACGUAAUAUGAGAAGUmiR5171siRNA24miRBase21-BestBlastHit
bdi-MIR7735-m1Brachypodium distachyon (Stiff brome) 1.01:48106343-48106504+3,73010.66AAGAGACGCGGCGACAAUGAUCUGsiRNA24miRBase21-BestBlastHit
bdi-MIR7708b-m1Brachypodium distachyon (Stiff brome) 1.01:49383462-49383925.5381.54CGAGAAUUGUAAUGGUACUGGGCAmiR7708siRNA24miRBase21-BestBlastHit
bdi-MIR7748a-m1Brachypodium distachyon (Stiff brome) 1.01:51138442-51138688.1,9105.46AAUAUGUUUUCUAUUGUUGGACGGmiR7748siRNA24miRBase21-BestBlastHit
bdi-MIR7722-m1Brachypodium distachyon (Stiff brome) 1.01:52273428-52273534-1,6374.68GAAGAAGGGUAUCGGGAUGAGAGGmiR7722siRNA24miRBase21-BestBlastHit
bdi-MIR7747-m1Brachypodium distachyon (Stiff brome) 1.01:53276108-53276440-2,0625.89AUCAGAUUGUUUUGUUGUAGGAUGmiR7747siRNA24miRBase21-BestBlastHit
bdi-MIR7756-m1Brachypodium distachyon (Stiff brome) 1.01:54324585-54324677.1,8755.36UGGAGAUGUUGGCAUUGAAUUGGCmiR7756siRNA24miRBase21-BestBlastHit
bdi-MIR5066-m1Brachypodium distachyon (Stiff brome) 1.01:55649102-55649202-670.19AGAAGAUCGUAGAUUGUAGUUAUCsiRNA24miRBase21-BestBlastHit
bdi-MIR7724a-m1Brachypodium distachyon (Stiff brome) 1.01:56107496-56107662.720.21UGAACAUGUACAUGCUGGCCAACCmiR7724siRNA24miRBase21-BestBlastHit
bdi-MIR1127-m1Brachypodium distachyon (Stiff brome) 1.01:58113848-58113964.4031.15AGAAUGCCACUUAAUAUCGGACGGmiR1127siRNA24miRBase21-BestBlastHit
bdi-MIR7726b-m1Brachypodium distachyon (Stiff brome) 1.01:60124988-60125147.6321.81AAUUUUGAUGACAUGACGUACGGCmiR7726siRNA24miRBase21-BestBlastHit
bdi-MIR5061-m1Brachypodium distachyon (Stiff brome) 1.01:61734973-61735092.6801.94AAUCAUCGCAUGGCGCUGGGAAGCmiR5061siRNA24miRBase21-BestBlastHit
bdi-MIR7744-m1Brachypodium distachyon (Stiff brome) 1.01:65104738-65105027-1,0943.13AGGAUGGCAAGAUUUAUCGAUGGGmiR7744siRNA24miRBase21-BestBlastHit
bdi-MIR437-m1Brachypodium distachyon (Stiff brome) 1.01:67022612-67022752.1360.39AAAGAUUGGUCGAACUUAGAGAAGmiR437siRNA24miRBase21-BestBlastHit
bdi-MIR7780-m1Brachypodium distachyon (Stiff brome) 1.01:68651831-68651930.51,953148.40AAGGACUAGAAGAAAAAAAACGUCsiRNA24miRBase21-BestBlastHit
bdi-MIR7766-m1Brachypodium distachyon (Stiff brome) 1.01:70862451-70862598-1,1553.30CGAGGCUGACUGGGACUAAGCGGCmiR7766siRNA24miRBase21-BestBlastHit
bdi-MIR7713-m1Brachypodium distachyon (Stiff brome) 1.01:72881362-72881695-5,69016.25CAAGCGCAUAUGGAUUGAUGGAACsiRNA24miRBase21-BestBlastHit
bdi-MIR7774-m1Brachypodium distachyon (Stiff brome) 1.01:72902118-72902245+4,50412.87ACUAUGGUCUGUGAGGAUGGCAACmiR7774siRNA24miRBase21-BestBlastHit
bdi-MIR7729a-m2Brachypodium distachyon (Stiff brome) 1.02:5641229-5641318.340.10UGUUUUCAUAGGCCAUGUAGAGCmiR7729siRNA24miRBase21-BestBlastHit
bdi-MIR531-m1Brachypodium distachyon (Stiff brome) 1.02:9542419-9542492+10,44429.83GAUGCUCGCCGGAGCAGCGUGCUGmiR531siRNA24miRBase21-BestBlastHit
bdi-MIR5171b-m1Brachypodium distachyon (Stiff brome) 1.02:11086341-11086534.800.23AUGGGACGGAAGAAUUACAAAACAmiR5171siRNA24miRBase21-BestBlastHit
bdi-MIR1135-m1Brachypodium distachyon (Stiff brome) 1.02:24701180-24701317.450.13GACAAGUAAUACCGGUCGGAGGAAmiR1135siRNA24miRBase21-BestBlastHit
bdi-MIR7772-m1Brachypodium distachyon (Stiff brome) 1.02:27051633-27051729.3,99511.41AAAUGGAUCGUCAUGCUGGACCGCsiRNA24miRBase21-BestBlastHit
bdi-MIR5070-m1Brachypodium distachyon (Stiff brome) 1.02:35045123-35045246.340.10AAGCAGUGUCAAAGGCUACCCUGAmiR5070siRNA24miRBase21-BestBlastHit
bdi-MIR5064-m1Brachypodium distachyon (Stiff brome) 1.02:38751727-38752100.30.01AGGACAAGGAAUGCCUCUGCUCAUmiR5064siRNA24miRBase21-BestBlastHit
bdi-MIR5183-m1Brachypodium distachyon (Stiff brome) 1.02:46665653-46665804.4431.27AUGGACGUAGCUAUUCUUAAAAAAmiR5183siRNA24miRBase21-BestBlastHit
bdi-MIR5184-m1Brachypodium distachyon (Stiff brome) 1.02:47213136-47213398-8132.32CAUGACUGUUUGCAGGUGCAUAUGmiR5184siRNA24miRBase21-BestBlastHit
bdi-MIR7765-m1Brachypodium distachyon (Stiff brome) 1.02:47611750-47612266.650.19UCAUUUGCAACUUGUUGGACUmiR7765siRNA24miRBase21-BestBlastHit
bdi-MIR7730-m1Brachypodium distachyon (Stiff brome) 1.02:50019627-50020106-4,23612.10GCAUCCAAAUGGACAGAACAGCCmiR7730siRNA24miRBase21-BestBlastHit
bdi-MIR7746-m1Brachypodium distachyon (Stiff brome) 1.02:53185475-53185979-2,0015.72UAGACUAAGAGUUCCAACAGAAGCmiR7746siRNA24miRBase21-BestBlastHit
bdi-MIR9483b-m1Brachypodium distachyon (Stiff brome) 1.03:2804995-2805256.80.02CAAGUAGAAGUUGAACUGUUUmiR9483siRNA24miRBase21-BestBlastHit
bdi-MIR7761-m1Brachypodium distachyon (Stiff brome) 1.03:4507481-4507863-6,14317.55UCUUGAUCAAGAGACGGCUCUGGCmiR7761siRNA24miRBase21-BestBlastHit
bdi-MIR7711-m1Brachypodium distachyon (Stiff brome) 1.03:4809448-4809995-23,27766.49AGAUUGUUAAAGAGGCCAAGUAUUmiR7711siRNA24miRBase21-BestBlastHit
bdi-MIR7781-m1Brachypodium distachyon (Stiff brome) 1.03:6987696-6987971+5,86316.75AAUUUGAUUUUUCUGACGACGGACmiR7781siRNA24miRBase21-BestBlastHit
bdi-MIR7751-m1Brachypodium distachyon (Stiff brome) 1.03:8931946-8932027+2,7857.96AUCUUCCUCGUGGACAAGCGGUAGmiR7751siRNA24miRBase21-BestBlastHit
bdi-MIR7729a-m4Brachypodium distachyon (Stiff brome) 1.03:9790212-9790301.5761.65UGUUUUCAUAGGCCAUGUAGAGCmiR7729siRNA24miRBase21-BestBlastHit
bdi-MIR5181d-m1Brachypodium distachyon (Stiff brome) 1.03:14779421-14779487.1,8695.34UACUUAUUAUGGACCGGAGGGAGCmiR5181siRNA24miRBase21-BestBlastHit
bdi-MIR7726a-m1Brachypodium distachyon (Stiff brome) 1.03:15036602-15036699.8002.29UGAUGAUGGUACGGACGUCGCGGUmiR7726siRNA24miRBase21-BestBlastHit
bdi-MIR7748b-m1Brachypodium distachyon (Stiff brome) 1.03:16741357-16741575.3,3969.70AUGUUAGGAUUCGGUUGACCAAGCmiR7748siRNA24miRBase21-BestBlastHit
bdi-MIR845-m1Brachypodium distachyon (Stiff brome) 1.03:17791439-17791533.560.16UGCAGACGAUCUAGGUAUCAGAGmiR845siRNA24miRBase21-BestBlastHit
bdi-MIR9490-m1Brachypodium distachyon (Stiff brome) 1.03:18715092-18715183-4791.37GGCCACACCCUAAUGGUCGUGCGGmiR9490siRNA24miRBase21-BestBlastHit
bdi-MIR5054-m1Brachypodium distachyon (Stiff brome) 1.03:21161853-21161949+1330.38AAGGACCUGAAGCGGAUCGGCUCCsiRNA24miRBase21-BestBlastHit
bdi-MIR5068-m1Brachypodium distachyon (Stiff brome) 1.03:25092263-25092338.1080.31GUAGAGCGGGUAUGGGUAUGGGAAmiR5068siRNA24miRBase21-BestBlastHit
bdi-MIR7729a-m3Brachypodium distachyon (Stiff brome) 1.03:26812498-26812587.150.04AUGAAAACAGUAGAUCGAGGUGUCsiRNA24miRBase21-BestBlastHit
bdi-MIR7785-m1Brachypodium distachyon (Stiff brome) 1.03:29739922-29740001-5691.63GUAGAAUGGGUGAUGGGAGAAGGCmiR7785siRNA24miRBase21-BestBlastHit
bdi-MIR7717c-m1Brachypodium distachyon (Stiff brome) 1.03:32702277-32702466+5,48415.67UUAGUUGACUGAGAAAUAGACGGUmiR7717siRNA24miRBase21-BestBlastHit
bdi-MIR7717b-m1Brachypodium distachyon (Stiff brome) 1.03:35252490-35252674+4021.15AAGACGACUGAGAAAUAACUAUAUmiR7717siRNA24miRBase21-BestBlastHit
bdi-MIR5174e-m1Brachypodium distachyon (Stiff brome) 1.03:37067795-37067905.4,02411.49AAAGAUUGGCACGGCUUUGAACUAmiR5174siRNA24miRBase21-BestBlastHit
bdi-MIR7775-m1Brachypodium distachyon (Stiff brome) 1.03:38334085-38334209.2,1386.11ACCGGUUUAUUCUGAAGCACCAGUmiR7775siRNA24miRBase21-BestBlastHit
bdi-MIR7787-m1Brachypodium distachyon (Stiff brome) 1.03:39152783-39152894.2,0815.94GUGCUCGUCCACAAGAGAAGCAGGmiR7787siRNA24miRBase21-BestBlastHit
bdi-MIR7786-m1Brachypodium distachyon (Stiff brome) 1.03:42351455-42351563-8,38623.95UGCACAAACUGUGGAGUAGUCGGCmiR7786siRNA24miRBase21-BestBlastHit
bdi-MIR7760-m1Brachypodium distachyon (Stiff brome) 1.03:44260861-44261035+5,48315.66AGCGGACAGAAUGGAGCAAGCAGCmiR7760siRNA24miRBase21-BestBlastHit
bdi-MIR5174b-m1Brachypodium distachyon (Stiff brome) 1.03:50778133-50778230.930.27AAAGGUUGGCACAAAUUUGAACUAmiR5174siRNA24miRBase21-BestBlastHit
bdi-MIR1139-m1Brachypodium distachyon (Stiff brome) 1.03:53829174-53829293.1,7214.92AUGUUACUCGCCACUGUGACCAGCmiR1139siRNA24miRBase21-BestBlastHit
bdi-MIR7737-m1Brachypodium distachyon (Stiff brome) 1.03:58512458-58512747-16,77247.91ACUUGAGACGGACUGUAUUAAAAAmiR7737siRNA24miRBase21-BestBlastHit
bdi-MIR5065-m1Brachypodium distachyon (Stiff brome) 1.03:59067940-59068130.2120.61AUAGGACUGCAUAUUUAAAUCACGmiR5065siRNA24miRBase21-BestBlastHit
bdi-MIR7731-m1Brachypodium distachyon (Stiff brome) 1.04:4382662-4383014+17,44449.83AGGUUUGCUCUGGACUUUGGAAUCmiR7731siRNA24miRBase21-BestBlastHit
bdi-MIR7784a-m1Brachypodium distachyon (Stiff brome) 1.04:4781925-4782047+2300.66GUACAUGAACUUAUAAGACGAGUAmiR7784siRNA24miRBase21-BestBlastHit
bdi-MIR9481b-m1Brachypodium distachyon (Stiff brome) 1.04:4929512-4929646.200.06ACCGUGAUGCAGAUUUGAAGGUGAsiRNA24miRBase21-BestBlastHit
bdi-MIR9481a-m1Brachypodium distachyon (Stiff brome) 1.04:4930203-4930325.740.21AAUCCCUGACCUCCGAAUUUGCAUsiRNA24miRBase21-BestBlastHit
bdi-MIR7750-m1Brachypodium distachyon (Stiff brome) 1.04:5126959-5127388+1,6764.79AUGGUCGGCAAUGAUACAGACGAGmiR7750siRNA24miRBase21-BestBlastHit
bdi-MIR5180b-m1Brachypodium distachyon (Stiff brome) 1.04:5647864-5647998.1760.50AAGUGUCGCAGUUUUGAAAUAGGCmiR5180siRNA24miRBase21-BestBlastHit
bdi-MIR5181b-m1Brachypodium distachyon (Stiff brome) 1.04:7045106-7045256.580.17CUUUGUACUAAAUCUCCGACAGGCmiR5181siRNA24miRBase21-BestBlastHit
bdi-MIR5057-m1Brachypodium distachyon (Stiff brome) 1.04:10594352-10594427.80.02GAACAUCCUUGCAAAGUUAUUGGsiRNA24miRBase21-BestBlastHit
bdi-MIR7729b-m2Brachypodium distachyon (Stiff brome) 1.04:29752166-29752255.980.28UGUUUUCAUAGGCCAUGUAGAGCmiR7729siRNA24miRBase21-BestBlastHit
bdi-MIR7708a-m1Brachypodium distachyon (Stiff brome) 1.04:31535894-31536302+13,15037.56UGUAAUGGUACUGAACAAAGACGCmiR7708siRNA24miRBase21-BestBlastHit
bdi-MIR5058-m1Brachypodium distachyon (Stiff brome) 1.04:31543610-31543707.220.06GUGUCCAAUUUAAACAGUUGAGGGsiRNA24miRBase21-BestBlastHit
bdi-MIR7712-m1Brachypodium distachyon (Stiff brome) 1.04:33900876-33901442.1,0142.90UUAUUGUGGUAACUUUAAGAUGGCmiR7712siRNA24miRBase21-BestBlastHit
bdi-MIR7721-m1Brachypodium distachyon (Stiff brome) 1.04:34312043-34312234-8582.45ACGGGAUUUUAUAACGGACUUUGGmiR7721siRNA24miRBase21-BestBlastHit
bdi-MIR7745-m1Brachypodium distachyon (Stiff brome) 1.04:36289096-36289181-1,2263.50AAGGCUUUAGUAACAAGAGAUGUCmiR7745siRNA24miRBase21-BestBlastHit
bdi-MIR9493-m1Brachypodium distachyon (Stiff brome) 1.04:36753406-36753517-570.16UAAGAAUUAUGAAACGAAGGGmiR9493siRNA24miRBase21-BestBlastHit
bdi-MIR7707-m1Brachypodium distachyon (Stiff brome) 1.04:44574033-44574313+6911.97UUUGAUCGAUGUAUGGCUGAACGGmiR7707siRNA24miRBase21-BestBlastHit
bdi-MIR7710-m1Brachypodium distachyon (Stiff brome) 1.04:46018159-46018364+2,6187.48AUUGAUGUCACAAACUAUAGUAGCmiR7710siRNA24miRBase21-BestBlastHit
bdi-MIR5060-m1Brachypodium distachyon (Stiff brome) 1.05:10072906-10073211-2,4787.08GGUGGACGGCGGAACUGGAACUGCmiR5060siRNA24miRBase21-BestBlastHit
bdi-MIR7727-m1Brachypodium distachyon (Stiff brome) 1.05:13610099-13610196.1,1403.26CCAAGUCGAUUGGAACUAAUGAGCmiR7727siRNA24miRBase21-BestBlastHit
bdi-MIR2118a-m1Brachypodium distachyon (Stiff brome) 1.05:13861046-13861241.250.07GUCGGGAAGAGGAAGAGAAGAGGGmiR2118siRNA24miRBase21-BestBlastHit
bdi-MIR7749-m1Brachypodium distachyon (Stiff brome) 1.05:16482116-16482261-5251.50AUGGGCGCUCUCAGGGAAGCUGGCmiR7749siRNA24miRBase21-BestBlastHit
bdi-MIR530a-m1Brachypodium distachyon (Stiff brome) 1.05:16956517-16956678-270.08UGCAUUUGCACCUGCACCUACmiR530siRNA24miRBase21-BestBlastHit
bdi-MIR7743-m1Brachypodium distachyon (Stiff brome) 1.05:17786144-17786281.1,1793.37AGCAUCUACUGAUAGUUUGACUGCmiR7743siRNA24miRBase21-BestBlastHit
bdi-MIR7720-m1Brachypodium distachyon (Stiff brome) 1.05:17999321-17999432-2,5227.20AAUUGAUCGUGCGGAGAAGCCUCAmiR7720siRNA24miRBase21-BestBlastHit
bdi-MIR7762-m1Brachypodium distachyon (Stiff brome) 1.05:21791921-21792207-3,4949.98CUCGGAAUUUGGUCAUCAACUGGCmiR7762siRNA24miRBase21-BestBlastHit
bdi-MIR1122-m1Brachypodium distachyon (Stiff brome) 1.05:25218612-25218791.1,5544.44UAAUAGAGAUCGGAUGGAGUACAAmiR1122siRNA24miRBase21-BestBlastHit
bdi-MIR395c-m1Brachypodium distachyon (Stiff brome) 1.05:25455997-25456122+1,5514.43UGAAGUGUUUGGGGGAACUCmiR395siRNA24miRBase21-BestBlastHit