het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Brachypodium distachyon (Stiff brome) genome build 1.0 (bdi-b1.0)

Version v1.0 of Brachypodium distachyon cv. Bd21 from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bdi-MIR7769-m1Brachypodium distachyon (Stiff brome) 1.01:2375800-2376168+1,7264.93UGUCAUGUUGGCACUGAUGGGmiR7769siRNA21miRBase21-BestBlastHit
bdi-MIR9491-m1Brachypodium distachyon (Stiff brome) 1.01:14711883-14711980+3541.01UGGUAUGUUACCUCUGAUCAGmiR9491siRNA21miRBase21-BestBlastHit
bdi-MIR5175a-m1Brachypodium distachyon (Stiff brome) 1.01:15325058-15325194.6371.82GUAAGAAUUUAGGAACAGAAGmiR5175siRNA21miRBase21-BestBlastHit
bdi-MIR5202-m1Brachypodium distachyon (Stiff brome) 1.01:28904144-28904243.4,63713.25UAACAUAAGUUUGAACUCACGmiR5202siRNA21miRBase21-BestBlastHit
bdi-MIR9498-m1Brachypodium distachyon (Stiff brome) 1.01:38422189-38422246+600.17GACCGUCAAGUGGUUGUUGAGmiR9498siRNA21miRBase21-BestBlastHit
bdi-MIR5199-m1Brachypodium distachyon (Stiff brome) 1.01:42791417-42791560-4641.33CAUACGGUUGAUAGCACUUAGmiR5199siRNA21miRBase21-BestBlastHit
bdi-MIR5172-m1Brachypodium distachyon (Stiff brome) 1.01:44311568-44311956+10,98531.38CGAGGAGCUAGUAGAUCGGGAmiR5172siRNA21miRBase21-BestBlastHit
bdi-MIR7734-m1Brachypodium distachyon (Stiff brome) 1.01:46850031-46850373-4,47112.77GAACGUGACUGGGUUAACGCCmiR7734siRNA21miRBase21-BestBlastHit
bdi-MIR5185e-m1Brachypodium distachyon (Stiff brome) 1.01:50946307-50946421.270.08UUUGAGAAUUGAACUAGAAGCmiR5185siRNA21miRBase21-BestBlastHit
bdi-MIR5170-m1Brachypodium distachyon (Stiff brome) 1.01:56853936-56854310-1,9305.51UUACGAUCAUUGAACUUGUCGmiR5170siRNA21miRBase21-BestBlastHit
bdi-MIR7777-m1Brachypodium distachyon (Stiff brome) 1.01:65552800-65552950-5,60416.01UCUGACAAACACCAUCGCAACmiR7777siRNA21miRBase21-BestBlastHit
bdi-MIR5185d-m1Brachypodium distachyon (Stiff brome) 1.01:66835948-66836081+4,67013.34UUUGAGAAUUGAACUAGAAGCmiR5185siRNA21miRBase21-BestBlastHit
bdi-MIR7770-m1Brachypodium distachyon (Stiff brome) 1.02:7993933-7994056+2,6057.44UCUAGACGGGCCUUCAAAGAGmiR7770siRNA21miRBase21-BestBlastHit
bdi-MIR408-m1Brachypodium distachyon (Stiff brome) 1.02:10450366-10450510+26,89376.82ACAGGGAUGGAGCAGAGCAUGmiR408siRNA21miRBase21-BestBlastHit
bdi-MIR399c-m1Brachypodium distachyon (Stiff brome) 1.02:16765663-16765802.90.03UGCCAAAGGAGAAUUGCCCUGmiR399siRNA21miRBase21-BestBlastHit
bdi-MIR7755-m1Brachypodium distachyon (Stiff brome) 1.02:22520134-22520346-1,2893.68UCAAUUUACGGUGUAGAAUUGmiR7755siRNA21miRBase21-BestBlastHit
bdi-MIR5185a-m1Brachypodium distachyon (Stiff brome) 1.02:41735710-41735862+4571.31UUUGAGAAUUGAACUAGAAGCmiR5185siRNA21miRBase21-BestBlastHit
bdi-MIR5201-m1Brachypodium distachyon (Stiff brome) 1.02:42461428-42461517-9422.69CAGGGCGAGGCAAAUGAUCAAmiR5201siRNA21miRBase21-BestBlastHit
bdi-MIR5181a-m1Brachypodium distachyon (Stiff brome) 1.02:48358975-48359115+3140.90CGGCACUUAUUAUGGAUCAGAmiR5181siRNA21miRBase21-BestBlastHit
bdi-MIR7776-m1Brachypodium distachyon (Stiff brome) 1.02:54086906-54087052-2,6717.63UUGAUAAUGGGUUGAAUGCGCmiR7776siRNA21miRBase21-BestBlastHit
bdi-MIR7757-m1Brachypodium distachyon (Stiff brome) 1.02:57745334-57745931+678,2191,937.32ACUGGUUGGAUCAUGCUUCUAsiRNA21miRBase21-BestBlastHit
bdi-MIR7740-m1Brachypodium distachyon (Stiff brome) 1.03:3759281-3759403+3,0278.65AGAGGUUGUUCGGAUGAAGAAUGCmiR7740siRNA21miRBase21-BestBlastHit
bdi-MIR5178-m1Brachypodium distachyon (Stiff brome) 1.03:8463664-8463877-2,6207.48UCUGACCGGUGGGCCUGAGCGmiR5178siRNA21miRBase21-BestBlastHit
bdi-MIR169f-m1Brachypodium distachyon (Stiff brome) 1.03:16738806-16738956+3,99211.40CAGCCAAGGAUGACUUGCCGGmiR169siRNA21miRBase21-BestBlastHit
bdi-MIR5174f-m1Brachypodium distachyon (Stiff brome) 1.03:18576851-18576934.1440.41CCUCCGUUUCAUAAAGGUUGGmiR5174siRNA21miRBase21-BestBlastHit
bdi-MIR7709-m1Brachypodium distachyon (Stiff brome) 1.03:18724294-18724682-5,05914.45UAAAGUAUGACUAGGCACACGmiR7709siRNA21miRBase21-BestBlastHit
bdi-MIR7715-m1Brachypodium distachyon (Stiff brome) 1.03:36497308-36497435+1,8645.32UCAAAGAUGGGAUUUCUGAACmiR7715siRNA21miRBase21-BestBlastHit
bdi-MIR444a-m1Brachypodium distachyon (Stiff brome) 1.03:38888780-38888843+2210.63UGCAGUUGCUGCCUCAAGCUUmiR444siRNA21miRBase21-BestBlastHit
bdi-MIR5185f-m1Brachypodium distachyon (Stiff brome) 1.03:44959226-44959335-3,96611.33UUUGAGAAUUGAACUAGAAGCmiR5185siRNA21miRBase21-BestBlastHit
bdi-MIR444c-m1Brachypodium distachyon (Stiff brome) 1.03:48666800-48666875-43,927125.48UGUUGUCUCAAGCUUGCUGCCmiR444siRNA21miRBase21-BestBlastHit
bdi-MIR5281b-m1Brachypodium distachyon (Stiff brome) 1.03:48737185-48737430.1830.52UCUUAUAAAUAGGAACGGAGGmiR5281siRNA21miRBase21-BestBlastHit
bdi-MIR171a-m1Brachypodium distachyon (Stiff brome) 1.03:52059037-52059156-1410.40UGAUUGAGCCGCGCCAAUAUCmiR171siRNA21miRBase21-BestBlastHit
bdi-MIR444b-m1Brachypodium distachyon (Stiff brome) 1.03:56701604-56701706+7,68621.96GGCGACAACUGCAUUACUUGCmiR444siRNA21miRBase21-BestBlastHit
bdi-MIR5180a-m1Brachypodium distachyon (Stiff brome) 1.03:56704432-56704571.1720.49CGACACUUAUUUUGGAUCAGAGGUmiR5180siRNA21miRBase21-BestBlastHit
bdi-MIR164c-m1Brachypodium distachyon (Stiff brome) 1.03:59107074-59107211-11,39632.55UGCUGGAGAAGCAGGGCACGUmiR164siRNA21miRBase21-BestBlastHit
bdi-MIR7764-m1Brachypodium distachyon (Stiff brome) 1.04:5125732-5125842+7862.25AAAUAGAUCUUGGCGUUAUGGGmiR7764siRNA21miRBase21-BestBlastHit
bdi-MIR9486a-m1Brachypodium distachyon (Stiff brome) 1.04:7498369-7498481-1,2863.67UGCUUUCAAGGGAUUAGAGGUmiR9486siRNA21miRBase21-BestBlastHit
bdi-MIR5185g-m1Brachypodium distachyon (Stiff brome) 1.04:10669865-10669986+4701.34UUUGAGAAUUGAACUAGAAGCmiR5185siRNA21miRBase21-BestBlastHit
bdi-MIR5166-m1Brachypodium distachyon (Stiff brome) 1.04:14440355-14440694+2750.79GAUCGGACCCUGGUGUGCAGCmiR5166siRNA21miRBase21-BestBlastHit
bdi-MIR7736-m1Brachypodium distachyon (Stiff brome) 1.04:22303221-22303379-2,3596.74UGACAUAUCUGAUGGUAAAGGmiR7736siRNA21miRBase21-BestBlastHit
bdi-MIR5164-m1Brachypodium distachyon (Stiff brome) 1.04:22543862-22544027.550.16CGCAACUUUGUCUAGAUACGCmiR5164siRNA21miRBase21-BestBlastHit
bdi-MIR5185h-m1Brachypodium distachyon (Stiff brome) 1.04:28275129-28275253.790.23UUUGAGAAUUGAACUAGAAGCmiR5185siRNA21miRBase21-BestBlastHit
bdi-MIR9480a-m1Brachypodium distachyon (Stiff brome) 1.04:31011548-31011617-3,2669.33UAUGUGAGGGUGGUAACUGAAmiR9480siRNA21miRBase21-BestBlastHit
bdi-MIR319a-m1Brachypodium distachyon (Stiff brome) 1.04:31253293-31253572+3,75310.72UGGACUGAAGGGAGCUCCCUCmiR319siRNA21miRBase21-BestBlastHit
bdi-MIR5165-m1Brachypodium distachyon (Stiff brome) 1.04:33186148-33186396-5,43815.53AUAUGGUGGGAAUUCAUGGUAmiR5165siRNA21miRBase21-BestBlastHit
bdi-MIR5185i-m1Brachypodium distachyon (Stiff brome) 1.04:35293520-35293620.6011.72UUUGAGAAUUGAACUAGAAGCmiR5185siRNA21miRBase21-BestBlastHit
bdi-MIR156a-m1Brachypodium distachyon (Stiff brome) 1.04:39473438-39473584+7922.26UUGACAGAAGAGAGAGAGCACmiR156siRNA21miRBase21-BestBlastHit
bdi-MIR5167a-m1Brachypodium distachyon (Stiff brome) 1.04:42126781-42127074-4,29812.28GUGAAUUACCUUAACUAGAGCmiR5167siRNA21miRBase21-BestBlastHit
bdi-MIR7768a-m1Brachypodium distachyon (Stiff brome) 1.05:1447437-1447542-14,76342.17CCCGGUCGAGGACGGCCCCGCmiR7768siRNA21miRBase21-BestBlastHit
bdi-MIR5185b-m1Brachypodium distachyon (Stiff brome) 1.05:6094953-6095105+1,3643.90UUUGAGAAUUGAACUAGAAGCmiR5185siRNA21miRBase21-BestBlastHit
bdi-MIR5185j-m1Brachypodium distachyon (Stiff brome) 1.05:9614368-9614468.2420.69UUUGAGAAUUGAACUAGAAGCmiR5185siRNA21miRBase21-BestBlastHit
bdi-MIR444d-m1Brachypodium distachyon (Stiff brome) 1.05:15919916-15919986-44,620127.46UGUUGUCUCAAGCUUGCUGCCmiR444siRNA21miRBase21-BestBlastHit
bdi-MIR5169b-m1Brachypodium distachyon (Stiff brome) 1.05:20527327-20527532-3,4829.95UUUGACCAAGUUUGUAGAACAmiR5169siRNA21miRBase21-BestBlastHit
bdi-MIR7768b-m1Brachypodium distachyon (Stiff brome) 1.05:21264994-21265108-5,73316.38CCCGGUCGAGGACGGCCCCGCmiR7768siRNA21miRBase21-BestBlastHit
bdi-MIR5185k-m1Brachypodium distachyon (Stiff brome) 1.05:24868302-24868411.2,6267.50UUUGAGAAUUGAACUAGAAGCmiR5185siRNA21miRBase21-BestBlastHit