het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Brachypodium distachyon (Stiff brome) genome build 1.0 (bdi-b1.0)

Version v1.0 of Brachypodium distachyon cv. Bd21 from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bdi-MIR7725a-m1Brachypodium distachyon (Stiff brome) 1.01:1326421-1326660-3,0338.66GCAAACAAUGUGAUUUCGUCAAGAmiR7725nearMIRNAmiRBase21-BestBlastHit
bdi-MIR167a-m1Brachypodium distachyon (Stiff brome) 1.01:6349045-6349135+36,587104.51UGAAGCUGCCAGCAUGAUCUAmiR167nearMIRNAmiRBase21-BestBlastHit
bdi-MIR169n-m1Brachypodium distachyon (Stiff brome) 1.01:11346973-11347080-3050.87UAGCCAAGGAUGACUUGCCUAmiR169nearMIRNAmiRBase21-BestBlastHit
bdi-MIR171e-m1Brachypodium distachyon (Stiff brome) 1.01:30824648-30824742-8,04722.99UGAUUGAGCCGUGCCAAUAUCmiR171nearMIRNAmiRBase21-BestBlastHit
bdi-MIR5200b-m1Brachypodium distachyon (Stiff brome) 1.01:47483427-47483527+7,33420.95UGUAGAUACUCCCUAAGGCUUmiR5200nearMIRNAmiRBase21-BestBlastHit
bdi-MIR5200c-m1Brachypodium distachyon (Stiff brome) 1.01:47483433-47483519+7,33420.95UGUAGAUACUCCCUAAGGCUUmiR5200nearMIRNAmiRBase21-BestBlastHit
bdi-MIR395m-m1Brachypodium distachyon (Stiff brome) 1.01:55440156-55440250-1210.35UGAAGUGUUUGGGGGAACUCmiR395nearMIRNAmiRBase21-BestBlastHit
bdi-MIR393a-m1Brachypodium distachyon (Stiff brome) 1.02:2001005-2001163-870.25UCCAAAGGGAUCGCAUUGAUCmiR393nearMIRNAmiRBase21-BestBlastHit
bdi-MIR9487-m1Brachypodium distachyon (Stiff brome) 1.02:25442100-25442286+3981.14UUCGAUUGCAAGAUGACAGGUmiR9487nearMIRNAmiRBase21-BestBlastHit
bdi-MIR164e-m1Brachypodium distachyon (Stiff brome) 1.02:26808982-26809108-1,2933.69UGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAmiRBase21-BestBlastHit
bdi-MIR9497-m1Brachypodium distachyon (Stiff brome) 1.02:49315484-49315725-420.12UUUCUGAAUACAUGGUGUAUCmiR9497nearMIRNAmiRBase21-BestBlastHit
bdi-MIR9496-m1Brachypodium distachyon (Stiff brome) 1.03:1747940-1748017-9122.61CUGGUUGGGCUUAGAUGGGUCCmiR9496nearMIRNAmiRBase21-BestBlastHit
bdi-MIR5175b-m1Brachypodium distachyon (Stiff brome) 1.03:19465406-19465546-200.06AUGACAAGAAUUUAGGAACAGAGGmiR5175nearMIRNAmiRBase21-BestBlastHit
bdi-MIR7754-m1Brachypodium distachyon (Stiff brome) 1.03:22735492-22735614-49,955142.70UUCUCUCGGCUAAGGAACUGCmiR7754nearMIRNAmiRBase21-BestBlastHit
bdi-MIR162-m1Brachypodium distachyon (Stiff brome) 1.03:49592002-49592134+220.06UCGAUAAACCUCUGCAUCCGGmiR162nearMIRNAmiRBase21-BestBlastHit
bdi-MIR9482-m1Brachypodium distachyon (Stiff brome) 1.04:18009072-18009224-1,2243.50CCUUUGGGGAAGAAGGGAAACmiR9482nearMIRNAmiRBase21-BestBlastHit
bdi-MIR169l-m1Brachypodium distachyon (Stiff brome) 1.04:35762160-35762251-510.15UAGCCAAGGAUGAAUUGCCGmiR169nearMIRNAmiRBase21-BestBlastHit
bdi-MIR156j-m1Brachypodium distachyon (Stiff brome) 1.04:38856201-38856309-1,5694.48UGACAGAAGAGAGAGAGCACmiR156nearMIRNAmiRBase21-BestBlastHit
bdi-MIR5174c-m1Brachypodium distachyon (Stiff brome) 1.04:40461587-40461716-50,618144.59AUGAAGAUUGGCGUGACUUUGAACmiR5174nearMIRNAmiRBase21-BestBlastHit
bdi-MIR5169a-m1Brachypodium distachyon (Stiff brome) 1.04:42248170-42248379-5401.54UUUGACCAAGUUUGUAGAACAmiR5169nearMIRNAmiRBase21-BestBlastHit
bdi-MIR2118b-m1Brachypodium distachyon (Stiff brome) 1.05:13861144-13861372-620.18UUCCUGAUGCCUCCCAUUCCUAmiR2118nearMIRNAmiRBase21-BestBlastHit
bdi-MIR160f-m1Brachypodium distachyon (Stiff brome) 1.05:19337418-19337548-310.09UGCCUGGCUCCCUGUAUGCCmiR160nearMIRNAmiRBase21-BestBlastHit
bdi-MIR9480b-m1Brachypodium distachyon (Stiff brome) 1.05:22720969-22721075-1,0973.13UAUGUGAGGGUGGUAACUGAAmiR9480nearMIRNAmiRBase21-BestBlastHit
bdi-MIR171c-m1Brachypodium distachyon (Stiff brome) 1.05:24711141-24711226-16,68547.66UGAUUGAGCCGUGCCAAUAUCmiR171nearMIRNAmiRBase21-BestBlastHit