het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Sorghum bicolor (Sorghum) genome build 3.0 (sbi-b3.0)

Version v3.0 of Sorghum bicolor cv. BTx623 from Phytozome

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
sbi-MIR390-m1Sorghum bicolor (Sorghum) 3.0Chr01:2876710-2876888+7,23953.80AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAmiRBase21-BestBlastHit
sbi-MIR167a-m1Sorghum bicolor (Sorghum) 3.0Chr01:4354010-4354105+3,05122.68UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAmiRBase21-BestBlastHit
sbi-MIR167b-m1Sorghum bicolor (Sorghum) 3.0Chr01:7229987-7230184+109,365812.86UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAmiRBase21-BestBlastHit
sbi-MIR166b-m1Sorghum bicolor (Sorghum) 3.0Chr01:7384211-7384282+595,3604,425.01UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
sbi-MIR171a-m1Sorghum bicolor (Sorghum) 3.0Chr01:7802995-7803155-9,71472.20UGAUUGAGCCGUGCCAAUAUCmiR171MIRNAmiRBase21-BestBlastHit
sbi-MIR171h-m1Sorghum bicolor (Sorghum) 3.0Chr01:15602519-15602599-90,030669.15UUGAGCCGCGUCAAUAUCUCCmiR171MIRNAmiRBase21-BestBlastHit
sbi-MIR166a-m1Sorghum bicolor (Sorghum) 3.0Chr01:17260549-17260656-107,298797.49UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
sbi-MIR167f-m1Sorghum bicolor (Sorghum) 3.0Chr01:26092744-26092922+36,123268.48UGAAGCUGCCAGCAUGAUCUGAmiR167MIRNAmiRBase21-BestBlastHit
sbi-MIR166i-m1Sorghum bicolor (Sorghum) 3.0Chr01:26881126-26881211+7495.57UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
sbi-MIR171i-m1Sorghum bicolor (Sorghum) 3.0Chr01:59668493-59668582-1,43910.70UGAUUGAGCCGUGCCAAUAUCmiR171MIRNAmiRBase21-BestBlastHit
sbi-MIR437i-m1Sorghum bicolor (Sorghum) 3.0Chr01:67375016-67375185+9727.22AAACUUUGUCAAAGUUAGAGAmiR437MIRNAmiRBase21-BestBlastHit
sbi-MIR166c-m1Sorghum bicolor (Sorghum) 3.0Chr01:76349131-76349224-58,818437.16UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
sbi-MIR167h-m1Sorghum bicolor (Sorghum) 3.0Chr01:76577898-76577987-422,3263,138.94UGAAGCUGCCAGCAUGAUCUGAmiR167MIRNAmiRBase21-BestBlastHit
sbi-MIR171d-m1Sorghum bicolor (Sorghum) 3.0Chr01:78121346-78121498-8,61464.02UGAUUGAGCCGUGCCAAUAUCmiR171MIRNAmiRBase21-BestBlastHit
sbi-MIR528-m1Sorghum bicolor (Sorghum) 3.0Chr01:78558547-78558630-91,272678.38UGGAAGGGGCAUGCAGAGGAGmiR528MIRNAmiRBase21-BestBlastHit
sbi-MIR166j-m1Sorghum bicolor (Sorghum) 3.0Chr01:79739088-79739195-1,0547.83UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
sbi-MIR160e-m1Sorghum bicolor (Sorghum) 3.0Chr02:2883714-2883808-26,493196.91UGCCUGGCUCCCUGUAUGCCAmiR160MIRNAmiRBase21-BestBlastHit
sbi-MIR167d-m1Sorghum bicolor (Sorghum) 3.0Chr02:4980559-4980706-277,4212,061.93UGAAGCUGCCAGCAUGAUCUGAmiR167MIRNAmiRBase21-BestBlastHit
sbi-MIR398-m1Sorghum bicolor (Sorghum) 3.0Chr02:15132480-15132588-15,567115.70UGUGUUCUCAGGUCGCCCCCGmiR398MIRNAmiRBase21-BestBlastHit
sbi-MIR171c-m1Sorghum bicolor (Sorghum) 3.0Chr02:17069962-17070070-1,0107.51CAUGGUAUUGACUUGGCUCAUCmiR171MIRNAmiRBase21-BestBlastHit
sbi-MIR169e-m1Sorghum bicolor (Sorghum) 3.0Chr02:58892126-58892234-3532.62UAGCCAAGGAUGACUUGCCGGmiR169MIRNAmiRBase21-BestBlastHit
sbi-MIR156f-m1Sorghum bicolor (Sorghum) 3.0Chr02:59370555-59370682+15,129112.45GCUCACUUCUCUUUCUGUCAGCmiR156MIRNAmiRBase21-BestBlastHit
sbi-MIR166e-m1Sorghum bicolor (Sorghum) 3.0Chr02:61405284-61405434+4,28631.86UCGGACCAGGCUUCAAUCCCUmiR166MIRNAmiRBase21-BestBlastHit
sbi-MIR156d-m1Sorghum bicolor (Sorghum) 3.0Chr02:62805800-62805924-1,78713.28UGACAGAAGAGAGAGAGCACmiR156MIRNAmiRBase21-BestBlastHit
sbi-MIR1432-m1Sorghum bicolor (Sorghum) 3.0Chr02:71616755-71616938-21,916162.89CUCAGGAGAGAUGACACCGAmiR1432MIRNAmiRBase21-BestBlastHit
sbi-MIR164d-m1Sorghum bicolor (Sorghum) 3.0Chr02:76208220-76208379-1,3209.81UGGAGAAGCAGGGCACGUGCAmiR164MIRNAmiRBase21-BestBlastHit
sbi-MIR156b-m1Sorghum bicolor (Sorghum) 3.0Chr03:3415906-3415989-60,601450.42UUGACAGAAGAGAGUGAGCACmiR156MIRNAmiRBase21-BestBlastHit
sbi-MIR156c-m1Sorghum bicolor (Sorghum) 3.0Chr03:3416227-3416321-23,372173.71UGACAGAAGAGAGUGAGCACmiR156MIRNAmiRBase21-BestBlastHit
sbi-MIR393a-m1Sorghum bicolor (Sorghum) 3.0Chr03:6442916-6443054+2,93321.80AUCAUGCGAUCCUUUUGGAGGmiR393MIRNAmiRBase21-BestBlastHit
sbi-MIR159a-m1Sorghum bicolor (Sorghum) 3.0Chr03:8122151-8122376-1,819,56613,523.92UUUGGAUUGAAGGGAGCUCUGmiR159MIRNAmiRBase21-BestBlastHit
sbi-MIR169a-m1Sorghum bicolor (Sorghum) 3.0Chr03:10749535-10749625+39,852296.20CAGCCAAGGAUGACUUGCCGAmiR169MIRNAmiRBase21-BestBlastHit
sbi-MIR399a-m1Sorghum bicolor (Sorghum) 3.0Chr03:61878757-61878892+1711.27GGGCAGUUCGUCUUUGGCACAmiR399MIRNAmiRBase21-BestBlastHit
sbi-MIR167g-m1Sorghum bicolor (Sorghum) 3.0Chr03:64085700-64085822-17,218127.97UGAAGCUGCCAGCAUGAUCUGAmiR167MIRNAmiRBase21-BestBlastHit
sbi-MIR168-m1Sorghum bicolor (Sorghum) 3.0Chr04:2247075-2247180-2,704,92520,104.34UCGCUUGGUGCAGAUCGGGACmiR168MIRNAmiRBase21-BestBlastHit
sbi-MIR397-m1Sorghum bicolor (Sorghum) 3.0Chr04:4003721-4003811-28,950215.17UUGAGUGCAGCGUUGAUGAGCmiR397MIRNAmiRBase21-BestBlastHit
sbi-MIR160a-m1Sorghum bicolor (Sorghum) 3.0Chr04:4215241-4215324-4,73835.22UGCCUGGCUCCCUGUAUGCCAmiR160MIRNAmiRBase21-BestBlastHit
sbi-MIR156a-m1Sorghum bicolor (Sorghum) 3.0Chr04:5326257-5326340-718,7275,341.94GCUCACUUCUCUUUCUGUCAGCmiR156MIRNAmiRBase21-BestBlastHit
sbi-MIR399b-m1Sorghum bicolor (Sorghum) 3.0Chr04:9764453-9764573-930.69UGCCAAAGGAGAGCUGCCCUGmiR399MIRNAmiRBase21-BestBlastHit
sbi-MIR399j-m1Sorghum bicolor (Sorghum) 3.0Chr04:9784852-9784944-130.10UGCCAAAGGAGAAUUGCCCUGmiR399MIRNAmiRBase21-BestBlastHit
sbi-MIR529-m1Sorghum bicolor (Sorghum) 3.0Chr04:44685716-44685831+2,31517.21AGAAGAGAGAGAGUACAGCCUmiR529MIRNAmiRBase21-BestBlastHit
sbi-MIR5570-m1Sorghum bicolor (Sorghum) 3.0Chr04:47082724-47082829-1,84413.71ACAUGCUGAUUUGUCUUUUGUmiR5570MIRNAmiRBase21-BestBlastHit
sbi-MIR169h-m1Sorghum bicolor (Sorghum) 3.0Chr04:49927492-49927589-4,09730.45UAGCCAAGGAUGACUUGCCUAmiR169MIRNAmiRBase21-BestBlastHit
sbi-MIR156g-m1Sorghum bicolor (Sorghum) 3.0Chr04:56252122-56252210-7,29254.20UGACAGAAGAGAGUGAGCACmiR156MIRNAmiRBase21-BestBlastHit
sbi-MIR394b-m1Sorghum bicolor (Sorghum) 3.0Chr04:62923468-62923544-14,547108.12UUGGCAUUCUGUCCACCUCCmiR394MIRNAmiRBase21-BestBlastHit
sbi-MIR166d-m1Sorghum bicolor (Sorghum) 3.0Chr04:63914216-63914302-56,490419.86UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21-BestBlastHit
sbi-MIR166g-m1Sorghum bicolor (Sorghum) 3.0Chr04:64857514-64857647-10,64279.10UCGGACCAGGCUUCAAUCCCUmiR166MIRNAmiRBase21-BestBlastHit
sbi-MIR166f-m1Sorghum bicolor (Sorghum) 3.0Chr04:64857783-64857921-38,742287.95UCGGACCAGGCUUCAUUCCUCmiR166MIRNAmiRBase21-BestBlastHit
sbi-MIR164b-m1Sorghum bicolor (Sorghum) 3.0Chr04:65513692-65513802-24,630183.06UGGAGAAGCAGGGCACGUGCUmiR164MIRNAmiRBase21-BestBlastHit
sbi-MIR396c-m1Sorghum bicolor (Sorghum) 3.0Chr04:66726748-66726909+489,8063,640.48UUCCACAGCUUUCUUGAACUUmiR396MIRNAmiRBase21-BestBlastHit
sbi-MIR396a-m1Sorghum bicolor (Sorghum) 3.0Chr04:66733975-66734099-7,22153.67UUCCACAGCUUUCUUGAACUGmiR396MIRNAmiRBase21-BestBlastHit
sbi-MIR172c-m1Sorghum bicolor (Sorghum) 3.0Chr04:67645991-67646109-16,674123.93AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAmiRBase21-BestBlastHit
sbi-MIR396d-m1Sorghum bicolor (Sorghum) 3.0Chr04:68279979-68280074-1,057,7137,861.45UCCACAGGCUUUCUUGAACUGmiR396MIRNAmiRBase21-BestBlastHit
sbi-MIR169i-m1Sorghum bicolor (Sorghum) 3.0Chr05:16922857-16923025+4,61734.32CUAGCCAAGAAUGACUUGCCUmiR169MIRNAmiRBase21-BestBlastHit
sbi-MIR172f-m1Sorghum bicolor (Sorghum) 3.0Chr05:19295951-19296068-230.17AGAAUCCUGAUGAUGCUGCACmiR172MIRNAmiRBase21-BestBlastHit
sbi-MIR5564c-m1Sorghum bicolor (Sorghum) 3.0Chr05:69704231-69704388+7,068,86352,539.29UGGGAAGCAAUUCGUCGAACAmiR5564MIRNAmiRBase21-BestBlastHit
sbi-MIR5564a-m1Sorghum bicolor (Sorghum) 3.0Chr05:69707567-69707673+7,533,42455,992.14UGGGGAAGCAAUUCGUCGAACmiR5564MIRNAmiRBase21-BestBlastHit
sbi-MIR437r-m1Sorghum bicolor (Sorghum) 3.0Chr06:35916153-35916332-8816.55UUGGCCAAAGUUAGAGAAGUUmiR437MIRNAmiRBase21-BestBlastHit
sbi-MIR2118-m1Sorghum bicolor (Sorghum) 3.0Chr06:45483175-45483326-2611.94UUCCUGAUGCCUCCCAUGCCUAmiR2118MIRNAmiRBase21-BestBlastHit
sbi-MIR156h-m1Sorghum bicolor (Sorghum) 3.0Chr06:49965689-49965782-51,417382.16UGACAGAAGAGAGUGAGCACmiR156MIRNAmiRBase21-BestBlastHit
sbi-MIR171e-m1Sorghum bicolor (Sorghum) 3.0Chr06:53651339-53651462+8,00659.51UGAGCCGAACCAAUAUCACUCmiR171MIRNAmiRBase21-BestBlastHit
sbi-MIR399i-m1Sorghum bicolor (Sorghum) 3.0Chr06:54075299-54075419+2,72120.22UGCCAAAGGAGAGUUGCCCUGmiR399MIRNAmiRBase21-BestBlastHit
sbi-MIR169k-m1Sorghum bicolor (Sorghum) 3.0Chr06:55762145-55762241-485,2263,606.44CAGCCAAGGAUGACUUGCCGGmiR169MIRNAmiRBase21-BestBlastHit
sbi-MIR395d-m1Sorghum bicolor (Sorghum) 3.0Chr06:57228519-57228621-2,58419.21UGAAGUGUUUGGGGGAACUCmiR395MIRNAmiRBase21-BestBlastHit
sbi-MIR395e-m1Sorghum bicolor (Sorghum) 3.0Chr06:57228710-57228814-1110.83UGAAGUGUUUGGGGGAACUCmiR395MIRNAmiRBase21-BestBlastHit
sbi-MIR395a-m1Sorghum bicolor (Sorghum) 3.0Chr06:57783551-57783700+2842.11UGAAGUGUUUGGGGGAACUCmiR395MIRNAmiRBase21-BestBlastHit
sbi-MIR395b-m1Sorghum bicolor (Sorghum) 3.0Chr06:57784145-57784249+6054.50UGAAGUGUUUGGGGGAACUCmiR395MIRNAmiRBase21-BestBlastHit
sbi-MIR395g-m1Sorghum bicolor (Sorghum) 3.0Chr06:57784324-57784391+2471.84UGAAGUGUUUGGGGGAACUCmiR395MIRNAmiRBase21-BestBlastHit
sbi-MIR396e-m1Sorghum bicolor (Sorghum) 3.0Chr06:59881923-59882111+4,805,10135,713.89UCCACAGGCUUUCUUGAACUGmiR396MIRNAmiRBase21-BestBlastHit
sbi-MIR393b-m1Sorghum bicolor (Sorghum) 3.0Chr06:60459887-60459970-262,4841,950.91UCAGUGCAAUCCCUUUGGAAUmiR393MIRNAmiRBase21-BestBlastHit
sbi-MIR5568a-m1Sorghum bicolor (Sorghum) 3.0Chr07:1926888-1926993-1631.21AGCCAGAGCGACUUACAAUUUmiR5568MIRNAmiRBase21-BestBlastHit
sbi-MIR395i-m1Sorghum bicolor (Sorghum) 3.0Chr07:4623362-4623458+3222.39UGAAGUGUUUGGGGGAACUCmiR395MIRNAmiRBase21-BestBlastHit
sbi-MIR395j-m1Sorghum bicolor (Sorghum) 3.0Chr07:4623545-4623631+3402.53UGAAGUGUUUGGGGGAACUCmiR395MIRNAmiRBase21-BestBlastHit
sbi-MIR395l-m1Sorghum bicolor (Sorghum) 3.0Chr07:4624021-4624104+1,2339.16UGAAGUGCUUGGGGGAACUCmiR395MIRNAmiRBase21-BestBlastHit
sbi-MIR6223-m1Sorghum bicolor (Sorghum) 3.0Chr07:8175118-8175225+3,42025.42CUUGGGAGGAGCAUGCUAGAAmiR6223MIRNAmiRBase21-BestBlastHit
sbi-MIR156i-m1Sorghum bicolor (Sorghum) 3.0Chr07:57028197-57028317+2,41917.98UGACAGAAGAGAGUGAGCACmiR156MIRNAmiRBase21-BestBlastHit
sbi-MIR169l-m1Sorghum bicolor (Sorghum) 3.0Chr07:62246903-62246999-5,48040.73UAGCCAAGGAUGACUUGCCUmiR169MIRNAmiRBase21-BestBlastHit
sbi-MIR160f-m1Sorghum bicolor (Sorghum) 3.0Chr07:64834676-64834785-2,19716.33UGCCUGGCUCCCUGAAUGCCAmiR160MIRNAmiRBase21-BestBlastHit
sbi-MIR169q-m1Sorghum bicolor (Sorghum) 3.0Chr08:12317865-12317968-15,641116.25UGGCAUCCAUUCUUGGCUAAGmiR169MIRNAmiRBase21-BestBlastHit
sbi-MIR167i-m1Sorghum bicolor (Sorghum) 3.0Chr08:59223214-59223345+9,89573.55UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAmiRBase21-BestBlastHit
sbi-MIR167e-m1Sorghum bicolor (Sorghum) 3.0Chr08:59225502-59225680+2,849,78721,181.03UGAAGCUGCCAGCAUGAUCUGAmiR167MIRNAmiRBase21-BestBlastHit
sbi-MIR164a-m1Sorghum bicolor (Sorghum) 3.0Chr09:38911782-38911907-34,908259.45UGGAGAAGCAGGGCACGUGCAmiR164MIRNAmiRBase21-BestBlastHit
sbi-MIR164e-m1Sorghum bicolor (Sorghum) 3.0Chr09:44994962-44995166+7575.63UGGAGAAGCAGGGCACGUGCAmiR164MIRNAmiRBase21-BestBlastHit
sbi-MIR399c-m1Sorghum bicolor (Sorghum) 3.0Chr09:55505804-55505933-360.27GGGUACAUCUCCUUUGGCACAmiR399MIRNAmiRBase21-BestBlastHit
sbi-MIR399g-m1Sorghum bicolor (Sorghum) 3.0Chr09:55511807-55511931+140.10UGCCAAAGGAAAUUUGCCCCGmiR399MIRNAmiRBase21-BestBlastHit
sbi-MIR5564b-m1Sorghum bicolor (Sorghum) 3.0Chr09:58719513-58719617+1,010,3877,509.70AGCAAUUCGUCGAACAGCUUGmiR5564MIRNAmiRBase21-BestBlastHit
sbi-MIR172a-m1Sorghum bicolor (Sorghum) 3.0Chr09:58774558-58774659-25,476189.35AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAmiRBase21-BestBlastHit
sbi-MIR399d-m1Sorghum bicolor (Sorghum) 3.0Chr10:1578286-1578490+6725.00UGCCAAAGGAGAGUUGCCCUGmiR399MIRNAmiRBase21-BestBlastHit
sbi-MIR396b-m1Sorghum bicolor (Sorghum) 3.0Chr10:4466694-4466821+8,22361.12UUCCACAGCUUUCUUGAACUGmiR396MIRNAmiRBase21-BestBlastHit
sbi-MIR399h-m1Sorghum bicolor (Sorghum) 3.0Chr10:48189611-48189742+380.28GUGCGGUUCUCCUCUGGCAUGmiR399MIRNAmiRBase21-BestBlastHit
sbi-MIR171g-m1Sorghum bicolor (Sorghum) 3.0Chr10:54394753-54394829+3732.77UUGAGCCGCGCCAAUAUCUCUmiR171MIRNAmiRBase21-BestBlastHit
sbi-MIR156e-m1Sorghum bicolor (Sorghum) 3.0Chr10:55313871-55313993+91,200677.84GCUCGCUUCUCUUUCUGUCAGCmiR156MIRNAmiRBase21-BestBlastHit
sbi-MIR167c-m1Sorghum bicolor (Sorghum) 3.0Chr10:56429519-56429649+1,177,5068,751.81UGAAGCUGCCAGCAUGAUCUGmiR167MIRNAmiRBase21-BestBlastHit
sbi-MIR160b-m1Sorghum bicolor (Sorghum) 3.0Chr10:57093822-57093903+9,72072.24UGCCUGGCUCCCUGUAUGCCAmiR160MIRNAmiRBase21-BestBlastHit
sbi-MIR166h-m1Sorghum bicolor (Sorghum) 3.0Chr10:60095470-60095654-3,97729.56GGAAUGUUGUCUGGCUCGGGGmiR166MIRNAmiRBase21-BestBlastHit