| Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
|---|
| ptc-MIR6423-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:5773920-5774071 | - | 26 | 0.25 | CGGCGGCGGAGACGGAGGAUC | | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR319a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:7572695-7572882 | + | 8,078 | 76.01 | AGUGAAUGACGCGGGAGACAA | miR319 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6422-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:9517768-9517865 | . | 497 | 4.68 | UGUGAUAAUGAAGGCUAUGGU | miR6422 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6426a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:23471020-23471103 | - | 572 | 5.38 | ACAGUGGAGACAUGGAAGUGAAGA | miR6426 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR172d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:25389766-25389947 | + | 27 | 0.25 | GGAAUCUUGAUGAUGCUGCAU | miR172 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR390a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:28885485-28885603 | + | 293 | 2.76 | AAGCUCAGGAGGGAUAGCGCCA | miR390 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6457a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr02:1270641-1270867 | - | 74 | 0.70 | UAAUCUCUCUGCAGAAUGCUG | miR6457 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6460-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:16467621-16467768 | . | 3,294 | 30.99 | UGAUAUGUGGCAUUCAAUCGA | miR6460 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR476b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:18164629-18164721 | + | 9,905 | 93.20 | UAUAGUAAUUAGAGCUAGGAU | miR476 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7818-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:20912641-20912756 | . | 21 | 0.20 | UUUCUUAUCGAUCACUAGACG | miR7818 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6464-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:7020543-7020660 | . | 1,161 | 10.92 | UGAUUGCUUGUUGGAUAUUAU | miR6464 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7815-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:11304138-11304259 | . | 695 | 6.54 | CUCUUCAAAUAAAUCGUGGGA | miR7815 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6467-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:17355036-17355135 | . | 152 | 1.43 | AUAAGCUGUCGAGCGUUUUGU | miR6467 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6438a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:1448359-1448444 | . | 187 | 1.76 | UUGUACACAGAAUAGGUGAAAU | miR6438 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR166p-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:5096628-5096773 | - | 124 | 1.17 | UCUCGGACCAGGCUCCAUUCC | miR166 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7822-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:12376041-12376151 | . | 52 | 0.49 | UUUGAAAUUGAACAAAUGGUA | miR7822 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6457b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:24647697-24647872 | + | 94 | 0.88 | AAGCCGAAGUUGGUUUGCUGCACU | miR6457 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7820-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:6419011-6419090 | . | 35 | 0.33 | AUCAUAUAGGUUGAUCCUCGU | miR7820 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR2111b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:7006191-7006292 | - | 212 | 2.00 | CAGGAUUGGGUAAUUUGCAU | miR2111 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7838-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:9583683-9583935 | - | 26 | 0.25 | ACAUGUGCUGGGUAGGAGGAA | miR7838 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6474-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:250589-250693 | . | 4,332 | 40.76 | UGCAGAUCCGUAGAUAGCAAG | miR6474 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR160b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:2326303-2326400 | - | 5 | 0.05 | CCGUGGAUGGCGUAUGAGGAGG | miR160 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR172i-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:2603156-2603280 | + | 36 | 0.34 | UCUGUUGGUUGAAUGGAAGAG | miR172 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6475-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:6357737-6357857 | + | 141 | 1.33 | UCUUGAGAAGUAAAGAACGAC | miR6475 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR475b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:14051170-14051305 | - | 24,846 | 233.77 | UAACAUCUUGAUCAAUGGCCA | miR475 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6479-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr09:10679129-10679360 | . | 92 | 0.87 | AUCAAUGAGAAUACUACUGCA | miR6479 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6432-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:12082245-12082349 | + | 44 | 0.41 | CGGUUCUAGAGAAAAAGAUGG | miR6432 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR475c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:13692756-13692880 | + | 287 | 2.70 | UGAACAAUGGCCAUUGUAAGA | miR475 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7835-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:18736842-18736943 | + | 57 | 0.54 | UGGAUGGGAUUUUUCGGGAAG | miR7835 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7834-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:1663427-1663481 | - | 316 | 2.97 | UAAUAAAAUCUCGACUAUUAU | miR7834 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7819-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:3770746-3770902 | . | 33 | 0.31 | UCUUGAGAACAUGAUGAAUCG | miR7819 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6426b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:13698671-13698761 | + | 117 | 1.10 | GUGGAGACAUGGAAGUGAAGA | miR6426 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6441-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:17987120-17987216 | . | 2,545 | 23.95 | AAGUUGACGGAAGGACUACAU | miR6441 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6442-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:3074100-3074204 | + | 267 | 2.51 | CUGAACGGCUUGAAGGGCACG | miR6442 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR156i-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:4939241-4939339 | + | 47 | 0.44 | GCUCUCUAUGCUUCUGCCAUC | miR156 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7832-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:6363503-6363560 | . | 36 | 0.34 | ACUGUGGUGUAGGUUGGGAAC | miR7832 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR1446b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:13184305-13184407 | - | 1,920 | 18.07 | UUCUGAACUCUCUCCCUCAAC | miR1446 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6446-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:14946410-14946631 | + | 921 | 8.67 | UUGCUGGGUCCUGAUGAUGGA | miR6446 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR472b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:103700-103770 | + | 23,091 | 217.26 | UGGGUGAGUGGGGAAGAUAAC | miR472 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR166o-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:4144281-4144600 | + | 564 | 5.31 | UCGGACCAGGCUUCAUUCCUU | miR166 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6447-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:5981954-5982156 | - | 75 | 0.71 | UUGACGAAAUGUGACGACUAC | miR6447 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR166j-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:8119900-8120042 | + | 3 | 0.03 | GGUUGUCGGACCAGGCUUCAUU | miR166 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR166k-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:8119900-8120042 | + | 3 | 0.03 | GGUUGUCGGACCAGGCUUCAUU | miR166 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7812-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:14138761-14138871 | - | 184 | 1.73 | GUGCUGUUAUGAAUUGAUGGAGUG | miR7812 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR828b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:670432-670579 | + | 71 | 0.67 | UCAUUCGAGCAAGAAAUAUUA | miR828 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7830-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:2250964-2251034 | + | 29 | 0.27 | UGAUCUAGAGAACCGUUGCUU | miR7830 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7830-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:2251102-2251178 | . | 22 | 0.21 | UGAUCUAGAGAACCGUUGCUU | miR7830 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR169u-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:12187400-12187521 | + | 3,711 | 34.92 | UAGCCAAGGACGACUUGCCUA | miR169 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7829-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:14146065-14146228 | . | 78 | 0.73 | ACACAGAAACUCCAAGCCCAC | miR7829 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6439a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:74712-74973 | . | 56 | 0.53 | UAGUGAUGGCUUCUGCUUCUU | miR6439 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6439b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:74724-74961 | . | 56 | 0.53 | UAGUGAUGGCUUCUGCUUCUU | miR6439 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7826-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:2739835-2739933 | . | 20 | 0.19 | UUACCAAGUUUCAAAUUCUCA | miR7826 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR160h-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:7180197-7180294 | - | 1 | 0.01 | UGCCUGGCUCCCUGCAUGCCA | miR160 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7814-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:11162826-11163036 | - | 572 | 5.38 | AAAAUCUUGAACAUACGCAUCCAA | | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR390d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:12896830-12896935 | + | 8,116 | 76.36 | AAGCUCAGGAGGGAUAGCGCC | miR390 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6450b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:1998143-1998308 | + | 25 | 0.24 | CGAACACAGGACUCAAGGCUA | miR6450 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6452-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:5279672-5279789 | - | 170 | 1.60 | UGCAAAGGUAACUGAGACAAU | miR6452 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR482b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:13392488-13392637 | + | 7,068 | 66.50 | UGGGCAUGAGGUGUUUGGCAA | miR482 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR475a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:14311121-14311244 | - | 6,683 | 62.88 | UAACAUCUUGAUCAAUGGCCA | miR475 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7841-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:1025459-1025614 | - | 155 | 1.46 | GGGGGUUGCUGUCAAGCAUAA | miR7841 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6454-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:9352190-9352278 | + | 104 | 0.98 | CUUGUAACCUGAGUAGAGGCA | miR6454 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR169aa-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:16370855-16370963 | - | 10,827 | 101.87 | CCAGGUCGUUCUUGGCUCAAC | miR169 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR166n-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:4229729-4230056 | - | 656 | 6.17 | UCUCGGACCAGGCUUCAUUCC | miR166 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR319g-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:9528187-9528390 | + | 234 | 2.20 | UGUGAAUGAUGCGGGAGAUAAU | miR319 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR319d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:15787372-15787564 | + | 143 | 1.35 | UUGGACUGAAGGGAGCUCCC | miR319 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR478j-m10 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_737:3265-3323 | . | 2 | 0.02 | UAGGGACCGACGUUAAGCAUU | | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR478k-m10 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_737:3265-3323 | . | 2 | 0.02 | UUCAAAUGCUUAACGUCGGUC | | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR478l-m10 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_737:3265-3323 | . | 2 | 0.02 | UAGGGACCGACGUUAAGCAUU | | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR478m-m10 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_737:3265-3323 | . | 2 | 0.02 | UUCAAAUGCUUAACGUCGGUC | | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR478i-m10 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_737:3265-3323 | . | 2 | 0.02 | UAGGGACCGACGUUAAGCAUU | | siRNA21 | miRBase21-BestBlastHit |
Data from Lunardon et al. (2020)