het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Populus trichocarpa (Black Cottonwood) genome build 3.0 (ptc-b3.0)

Version v3.0 of Populus trichocarpa cv. Nisqually 1 from Phytozome

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
ptc-MIR169j-m1Populus trichocarpa (Black Cottonwood) 3.0Chr01:32753148-32753284-220.21GGCAGUCUCCUUGGCUAGCmiR169OtherRNAmiRBase21-BestBlastHit
ptc-MIR169i-m1Populus trichocarpa (Black Cottonwood) 3.0Chr01:32753432-32753554-2922.75AGGCAGUCUCCUCGGCUAACmiR169OtherRNAmiRBase21-BestBlastHit
ptc-MIR395a-m1Populus trichocarpa (Black Cottonwood) 3.0Chr02:14658627-14658852+40.04CUGAAGGGUUUGGAGGAAmiR395OtherRNAmiRBase21-BestBlastHit
ptc-MIR319b-m1Populus trichocarpa (Black Cottonwood) 3.0Chr03:15437817-15438001+940.88AUUGGACUGAAGGGAGCUCCmiR319OtherRNAmiRBase21-BestBlastHit
ptc-MIR396c-m1Populus trichocarpa (Black Cottonwood) 3.0Chr03:17210904-17211005-5765.42UUCCACGGCUUUCUUGAACUUmiR396OtherRNAmiRBase21-BestBlastHit
ptc-MIR399g-m2Populus trichocarpa (Black Cottonwood) 3.0Chr04:4945190-4945283-720.68UGCCAAAGGAGAAUUGCCCUGmiR399OtherRNAmiRBase21-BestBlastHit
ptc-MIR7816-m1Populus trichocarpa (Black Cottonwood) 3.0Chr04:21742556-21742658.3062.88UUGUUAUUAACACUGUAAUUGmiR7816OtherRNAmiRBase21-BestBlastHit
ptc-MIR1450-m1Populus trichocarpa (Black Cottonwood) 3.0Chr04:22273474-22273624-73,259689.29GUAGUCUGACCCGAGCCAUUGAAGAmiR1450OtherRNAmiRBase21-BestBlastHit
ptc-MIR396d-m1Populus trichocarpa (Black Cottonwood) 3.0Chr06:4870748-4870913-4,65743.82CUCAAGAAAGCCGUGGGAGAmiR396OtherRNAmiRBase21-BestBlastHit
ptc-MIR395b-m1Populus trichocarpa (Black Cottonwood) 3.0Chr06:7613271-7613368+8768.24CUGAAGUGUUUGGGGGAACUCmiR395OtherRNAmiRBase21-BestBlastHit
ptc-MIR396f-m1Populus trichocarpa (Black Cottonwood) 3.0Chr06:26064846-26064972-5765.42UUCCACGGCUUUCUUGAmiR396OtherRNAmiRBase21-BestBlastHit
ptc-MIR396g-m1Populus trichocarpa (Black Cottonwood) 3.0Chr07:9144011-9144178+17,192161.76UUCCACGGCUUUCUUGAmiR396OtherRNAmiRBase21-BestBlastHit
ptc-MIR6473-m1Populus trichocarpa (Black Cottonwood) 3.0Chr07:10483181-10483396-5805.46UUGUGGAUCCGACCAGGUAUGACACmiR6473OtherRNAmiRBase21-BestBlastHit
ptc-MIR6476a-m1Populus trichocarpa (Black Cottonwood) 3.0Chr08:11608840-11608938-410.39GUGGAGAUGAAACAUGAUAmiR6476OtherRNAmiRBase21-BestBlastHit
ptc-MIR6476b-m1Populus trichocarpa (Black Cottonwood) 3.0Chr08:11608840-11608938-410.39GUGGAGAUGAAACAUGAUAmiR6476OtherRNAmiRBase21-BestBlastHit
ptc-MIR6476c-m1Populus trichocarpa (Black Cottonwood) 3.0Chr08:11608840-11608938-410.39GUGGAGAUGAAACAUGAUAmiR6476OtherRNAmiRBase21-BestBlastHit
ptc-MIR6476a-m2Populus trichocarpa (Black Cottonwood) 3.0Chr08:11609095-11609193-490.46AGUGGAGAUGAAACAUGAUAmiR6476OtherRNAmiRBase21-BestBlastHit
ptc-MIR6476b-m2Populus trichocarpa (Black Cottonwood) 3.0Chr08:11609095-11609193-490.46AGUGGAGAUGAAACAUGAUAmiR6476OtherRNAmiRBase21-BestBlastHit
ptc-MIR6476c-m2Populus trichocarpa (Black Cottonwood) 3.0Chr08:11609095-11609193-490.46AGUGGAGAUGAAACAUGAUAmiR6476OtherRNAmiRBase21-BestBlastHit
ptc-MIR478q-m1Populus trichocarpa (Black Cottonwood) 3.0Chr08:11976793-11976887-50.05AAUUUAGGAGACUCGUCUAAAACAmiR478OtherRNAmiRBase21-BestBlastHit
ptc-MIR6478-m1Populus trichocarpa (Black Cottonwood) 3.0Chr09:1210799-1210936-150.14CCGACCUUAGCUCAGUUGGUmiR6478OtherRNAmiRBase21-BestBlastHit
ptc-MIR6434-m1Populus trichocarpa (Black Cottonwood) 3.0Chr10:16163392-16163547-1521.43CUAUGUAUGCUUGACCAAUCAmiR6434OtherRNAmiRBase21-BestBlastHit
ptc-MIR6435-m1Populus trichocarpa (Black Cottonwood) 3.0Chr10:18076036-18076143.30.03AUUGGUAAAUAGAUUGUCAUmiR6435OtherRNAmiRBase21-BestBlastHit
ptc-MIR159a-m1Populus trichocarpa (Black Cottonwood) 3.0Chr12:4736162-4736344-9,30687.56UUUGGAUUGAAGGGAGmiR159OtherRNAmiRBase21-BestBlastHit
ptc-MIR319e-m1Populus trichocarpa (Black Cottonwood) 3.0Chr12:5918396-5918587-660.62AGCUCCUUUUAGUCCAAUACmiR319OtherRNAmiRBase21-BestBlastHit
ptc-MIR159d-m1Populus trichocarpa (Black Cottonwood) 3.0Chr14:7304607-7304800+1,23611.63UUUGCAUGGCCAAGGAGACGUmiR159OtherRNAmiRBase21-BestBlastHit
ptc-MIR159b-m1Populus trichocarpa (Black Cottonwood) 3.0Chr15:3960940-3961126-304,4912,864.92UUUGGAUUGAAGGGAGmiR159OtherRNAmiRBase21-BestBlastHit
ptc-MIR319h-m1Populus trichocarpa (Black Cottonwood) 3.0Chr15:7415903-7416097+460.43AUUGGACUGAAGGGAGCUCCmiR319OtherRNAmiRBase21-BestBlastHit
ptc-MIR395k-m1Populus trichocarpa (Black Cottonwood) 3.0Chr16:14153951-14154102-5985.63CUGAAGUGUUUGGGGGAACUCmiR395OtherRNAmiRBase21-BestBlastHit
ptc-MIR395e-m1Populus trichocarpa (Black Cottonwood) 3.0Chr16:14153971-14154083-5985.63CUGAAGUGUUUGGGGGAACUCmiR395OtherRNAmiRBase21-BestBlastHit
ptc-MIR395f-m1Populus trichocarpa (Black Cottonwood) 3.0Chr16:14153971-14154083-5985.63CUGAAGUGUUUGGGGGAACUCmiR395OtherRNAmiRBase21-BestBlastHit
ptc-MIR395g-m1Populus trichocarpa (Black Cottonwood) 3.0Chr16:14155140-14155241+1010.95CUGAAGUGUUUGGGGGAACUCmiR395OtherRNAmiRBase21-BestBlastHit
ptc-MIR395h-m1Populus trichocarpa (Black Cottonwood) 3.0Chr16:14155140-14155241+1010.95CUGAAGUGUUUGGGGGAACUCmiR395OtherRNAmiRBase21-BestBlastHit
ptc-MIR395j-m1Populus trichocarpa (Black Cottonwood) 3.0Chr16:14155140-14155241+1010.95CUGAAGUGUUUGGGGGAACUCmiR395OtherRNAmiRBase21-BestBlastHit
ptc-MIR169m-m1Populus trichocarpa (Black Cottonwood) 3.0Chr17:5767273-5767391-1391.31UAGCCAAGGAUGACUUGCCUGmiR169OtherRNAmiRBase21-BestBlastHit
ptc-MIR478p-m16Populus trichocarpa (Black Cottonwood) 3.0Chr19:2329420-2329514.20.02CUUCUAAUUUUUAGGGACUmiR478OtherRNAmiRBase21-BestBlastHit
ptc-MIR169c-m1Populus trichocarpa (Black Cottonwood) 3.0Chr19:3663039-3663140-140.13GCAGGUUUUCCUUGGCUACmiR169OtherRNAmiRBase21-BestBlastHit