| Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
|---|
| ptc-MIR169a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:80676-80840 | - | 2 | 0.02 | CAGCCAAGGAUGACUUGCCGAUU | miR169 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6421-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:2252379-2252497 | - | 605,838 | 5,700.25 | UAGAGCAGAUUGUAAGGGAAG | miR6421 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6424-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:4728062-4728149 | + | 515 | 4.85 | CGCUCGCCAGCGUUGCACCACC | miR536 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6423-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:5773920-5774071 | - | 26 | 0.25 | CGGCGGCGGAGACGGAGGAUC | | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR474b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:6456792-6456898 | . | 49 | 0.46 | AUUCGGUCUGGCGGUUAAGAAGUU | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR166a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:6622527-6622690 | - | 201,867 | 1,899.34 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR319a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:7572695-7572882 | + | 8,078 | 76.01 | AGUGAAUGACGCGGGAGACAA | miR319 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6422-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:9517768-9517865 | . | 497 | 4.68 | UGUGAUAAUGAAGGCUAUGGU | miR6422 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR169o-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:16145426-16145529 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR7817b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:16204138-16204330 | + | 33 | 0.31 | UCUUCUGUUCCUGAACGGUAA | miR7817 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6425a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:21311268-21311487 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6425b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:21315911-21316130 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6425c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:21315911-21316130 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6425d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:21315911-21316130 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6425b-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:21319185-21319404 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6425c-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:21319185-21319404 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6425d-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:21319185-21319404 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6425b-m3 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:21322457-21322676 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6425c-m3 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:21322457-21322676 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6425d-m3 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:21322457-21322676 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6425b-m4 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:21325729-21325948 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6425c-m4 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:21325729-21325948 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6425d-m4 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:21325729-21325948 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6426a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:23471020-23471103 | - | 572 | 5.38 | ACAGUGGAGACAUGGAAGUGAAGA | miR6426 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7839-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:23994649-23994770 | - | 250 | 2.35 | AGUGGCAUUGGAGGUAUCCCA | miR7839 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6427-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:23994809-23994912 | - | 3,119 | 29.35 | UCGUAAUGCUUCAUUCUCACAA | miR6427 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6428-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:25181950-25182090 | . | 56 | 0.53 | UCUGGCAACUCAUUAGACUCAU | miR6428 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR172d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:25389766-25389947 | + | 27 | 0.25 | GGAAUCUUGAUGAUGCUGCAU | miR172 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6429-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:25404260-25404423 | - | 34 | 0.32 | UAGUAGAAAUGCAUUGACUAG | miR6429 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR398b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:28030197-28030281 | - | 23 | 0.22 | UGUGUUCUCAGGUCGCCCCUG | miR398 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR390a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:28885485-28885603 | + | 293 | 2.76 | AAGCUCAGGAGGGAUAGCGCCA | miR390 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR169q-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:28934136-28934250 | + | 93 | 0.88 | UAGCCAAGGACGACUUGCCUGU | miR169 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR169w-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:28934380-28934488 | + | 7 | 0.07 | UAGCCAAGGAUGACUUGCCCA | miR169 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR169j-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:32753148-32753284 | - | 22 | 0.21 | GGCAGUCUCCUUGGCUAGC | miR169 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR169i-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:32753432-32753554 | - | 292 | 2.75 | AGGCAGUCUCCUCGGCUAAC | miR169 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR171e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:33240609-33240702 | - | 155 | 1.46 | UGAUUGAGCCGUGCCAAUAUC | miR171 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR156l-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:34292488-34292581 | + | 4,432 | 41.70 | UUGACAGAAGAUGGAGAGCAC | miR156 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6430-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:34710160-34710298 | - | 891 | 8.38 | UGAUGAUUAAUUGACUGCAAA | miR6430 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR7828-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:36967846-36968030 | + | 402 | 3.78 | UUAAAUGAUGACAUGGACACC | miR7828 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR478r-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:43389414-43389471 | . | 3 | 0.03 | AGGAGACUCGUCUAAAAUAUUGAU | miR478 | siRNA20 | miRBase21-BestBlastHit |
| ptc-MIR478o-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:45696775-45696869 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR160a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:47432715-47432816 | + | 1,016 | 9.56 | GCGUGCGAGGAGCCAAGCAUA | miR160 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6431-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr01:49797387-49797484 | - | 40 | 0.38 | UUAUGUGGCAUAAAAGAAUCAA | miR6431 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR394a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr02:829455-829601 | - | 5,279 | 49.67 | UUGGCAUUCUGUCCACCUCC | miR394 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR171f-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr02:906476-906605 | + | 2,805 | 26.39 | UGAUUGAGCCGUGCCAAUAUC | miR171 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6457a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr02:1270641-1270867 | - | 74 | 0.70 | UAAUCUCUCUGCAGAAUGCUG | miR6457 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR166b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr02:2742397-2742502 | + | 153 | 1.44 | UCGGACCAGGCUUCAUUCCCC | miR166 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR167a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr02:3061403-3061491 | - | 19,291 | 181.51 | UGAAGCUGCCAGCAUGAUCUAA | miR167 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR167b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr02:3063996-3064091 | - | 6,696 | 63.00 | UGAAGCUGCCAGCAUGAUCUA | miR167 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR473b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr02:12827700-12827799 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR166c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr02:13561872-13562005 | + | 101,216 | 952.33 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR395a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr02:14658627-14658852 | + | 4 | 0.04 | CUGAAGGGUUUGGAGGAA | miR395 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR408-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr02:14792892-14792996 | + | 152,753 | 1,437.23 | ACGGGGAACAGGCAGAGCAUG | miR408 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR403a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr02:15448012-15448143 | + | 565 | 5.32 | UUAGAUUCACGCACAAACUCG | miR403 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR403d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr02:15448012-15448143 | + | 565 | 5.32 | UUAGAUUCACGCACAAACUCG | miR403 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR164a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr02:16629824-16629908 | + | 860 | 8.09 | UGGAGAAGCAGGGCACGUGCA | miR164 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR478e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr02:21031888-21031972 | + | 10 | 0.09 | AGAAGACUCGUCAAUUAGACCAUU | miR478 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR1449-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr02:24046728-24046842 | + | 77 | 0.72 | AGGAUUAGUUGAGGUGCACGUAAG | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR168a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:6270777-6270936 | + | 13,628 | 128.22 | UCGCUUGGUGCAGGUCGGGAA | miR168 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6458-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:7791298-7791452 | + | 133 | 1.25 | UUGUUUGAGCGUGAGGAUACU | miR6458 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6440b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:8696653-8696750 | + | 11 | 0.10 | UUUGACCGAGUGUGACUGAUUUC | miR6440 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR164f-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:9827743-9827832 | + | 77 | 0.72 | UGGAGAAGCAGGGCACGUGCU | miR164 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6459a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:10898072-10898172 | + | 61,242 | 576.22 | UCGAAUUUGGGCUUGAGAUUG | miR6459 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6459b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:10898079-10898165 | + | 61,242 | 576.22 | UCGAAUUUGGGCUUGAGAUUG | miR6459 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR399e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:14300513-14300621 | - | 186 | 1.75 | UGGCUUCUCUUCUUUGGCAGG | miR399 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR478d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:15386610-15386705 | - | 24 | 0.23 | AGAAGACACGUCAACUAGGCUAUU | miR478 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR319b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:15437817-15438001 | + | 94 | 0.88 | AUUGGACUGAAGGGAGCUCC | miR319 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR7825-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:16142517-16142788 | . | 354 | 3.33 | UUGAAGAAAGGUAGACAGAUAG | miR7825 | siRNA22 | miRBase21-BestBlastHit |
| ptc-MIR6460-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:16467621-16467768 | . | 3,294 | 30.99 | UGAUAUGUGGCAUUCAAUCGA | miR6460 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR396c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:17210904-17211005 | - | 576 | 5.42 | UUCCACGGCUUUCUUGAACUU | miR396 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR169k-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:17651357-17651559 | - | 12 | 0.11 | UGGCUAACGAGACGGGCUCUUA | | siRNA22 | miRBase21-BestBlastHit |
| ptc-MIR476b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:18164629-18164721 | + | 9,905 | 93.20 | UAUAGUAAUUAGAGCUAGGAU | miR476 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6461-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:18395663-18395787 | + | 233 | 2.19 | UUCUGAUCCAUGUACUGGCUA | miR6461 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR7818-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr03:20912641-20912756 | . | 21 | 0.20 | UUUCUUAUCGAUCACUAGACG | miR7818 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR171a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:885463-885566 | + | 1,156 | 10.88 | UGAUUGAGCCGUGCCAAUAUC | miR171 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR397b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:2366370-2366483 | + | 15 | 0.14 | AUUGAGUGCAGCGUUGAUGAAAGU | miR397 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6462a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:2380196-2380327 | + | 86 | 0.81 | AGGGGCAAAGAUGCAUAAGAG | miR6462 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR397c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:3133123-3133193 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR399a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:4815582-4815701 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR399f-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:4817044-4817144 | + | 62 | 0.58 | UGCCAAAGGAGAAUUGCCCUG | miR399 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR399b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:4859450-4859575 | + | 13 | 0.12 | UGCCAAAGGUGAUUUGCCCGG | miR399 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR399g-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:4863553-4863646 | - | 87 | 0.82 | UGCCAAAGGAGAAUUGCCCUG | miR399 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR399c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:4866131-4866224 | + | 23 | 0.22 | UUGCCAAAGGAGAUUUGCUCAG | miR399 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR399d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:4937357-4937470 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR399b-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:4941079-4941204 | + | 11 | 0.10 | UGCCAAAGGUGAUUUGCCCGG | miR399 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR399g-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:4945190-4945283 | - | 72 | 0.68 | UGCCAAAGGAGAAUUGCCCUG | miR399 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR399c-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:4947778-4947871 | + | 17 | 0.16 | UUGCCAAAGGAGAUUUGCUCAG | miR399 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6463-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:6327184-6327369 | + | 2,106 | 19.82 | UGGAUGAUCAUGUUGGCAACC | miR6463 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6464-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:7020543-7020660 | . | 1,161 | 10.92 | UGAUUGCUUGUUGGAUAUUAU | miR6464 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6465-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:8749426-8749584 | + | 1,520 | 14.30 | AGCAGGGGGUCUAGUAGUUUAA | miR6465 | siRNA22 | miRBase21-BestBlastHit |
| ptc-MIR7815-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:11304138-11304259 | . | 695 | 6.54 | CUCUUCAAAUAAAUCGUGGGA | miR7815 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6466-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:12048281-12048467 | + | 2,633 | 24.77 | UCUGGUAUGAGCAUUUGAUGA | miR6466 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6467-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:17355036-17355135 | . | 152 | 1.43 | AUAAGCUGUCGAGCGUUUUGU | miR6467 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6437a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:20683613-20683694 | . | 3 | 0.03 | ACGGACGGCGGCUCCAAGCAGCGG | miR6437 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR6437b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:20683613-20683694 | . | 3 | 0.03 | ACGGACGGCGGCUCCAAGCAGCGG | miR6437 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR6437a-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:20698298-20698379 | - | 1 | 0.01 | UGAGCCAAGACACCGCCAGCAGCC | miR6437 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR6437b-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:20698298-20698379 | - | 1 | 0.01 | UGAGCCAAGACACCGCCAGCAGCC | miR6437 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR7823-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:21244617-21244825 | - | 324 | 3.05 | UUGCAUGCAUGAACUUGAAAU | miR7823 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR7816-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:21742556-21742658 | . | 306 | 2.88 | UUGUUAUUAACACUGUAAUUG | miR7816 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR172f-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:22145353-22145513 | + | 2,477 | 23.31 | AGAAUCUUGAUGAUGCUGCAU | miR172 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR530b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:22216172-22216343 | + | 1,129 | 10.62 | UGCAUUUGCACCUGCAUCUUU | miR530 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR1450-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:22273474-22273624 | - | 73,259 | 689.29 | GUAGUCUGACCCGAGCCAUUGAAGA | miR1450 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR168b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr04:24020977-24021112 | - | 402,849 | 3,790.36 | UCGCUUGGUGCAGGUCGGGAA | miR168 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR472a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:119565-119645 | + | 31,074 | 292.37 | AGUAGGAUUUUCGGAAGGUUAUC | | siRNA23 | miRBase21-BestBlastHit |
| ptc-MIR6438a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:1448359-1448444 | . | 187 | 1.76 | UUGUACACAGAAUAGGUGAAAU | miR6438 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6438b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:1501308-1501530 | + | 5,851 | 55.05 | UCGACUGAAAGUGAAAGCUAU | miR6438 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR167e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:3750595-3750685 | + | 190,537 | 1,792.74 | UGAAGCUGCCAGCAUGAUCUG | miR167 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR166p-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:5096628-5096773 | - | 124 | 1.17 | UCUCGGACCAGGCUCCAUUCC | miR166 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR166d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:5096873-5096977 | - | 56 | 0.53 | GGAAUGUUGGCUGGCUCGAGGC | miR166 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR169af-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:6806058-6806164 | - | 24,403 | 229.61 | UAGCCAAGGACGACUUGCCCACC | miR169 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR169y-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:6809763-6809885 | + | 47 | 0.44 | UAGCCAUGGAUGAAUUGCCU | miR169 | siRNA20 | miRBase21-BestBlastHit |
| ptc-MIR169ac-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:6809984-6810089 | + | 646 | 6.08 | AGCCAAGGACGACUUGCCCA | miR169 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR171i-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:8125881-8126009 | + | 6,550 | 61.63 | UGAUUGAGCCGUGCCAAUAUC | miR171 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6440c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:9479674-9479768 | - | 1 | 0.01 | UACGAGUACAUGUGAAAUCGGGUU | miR6440 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR7836-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:9591136-9591296 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:10230940-10231034 | + | 4 | 0.04 | UCGGUCCCUAAAAAUAGAAGACAC | miR478 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR7822-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:12376041-12376151 | . | 52 | 0.49 | UUUGAAAUUGAACAAAUGGUA | miR7822 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR478k-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:17914817-17914875 | - | 111 | 1.04 | UUUUUCAAAUGGUUAACGUCGGUC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478l-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:17914817-17914875 | - | 111 | 1.04 | UUUUUCAAAUGGUUAACGUCGGUC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478m-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:17914817-17914875 | - | 111 | 1.04 | UUUUUCAAAUGGUUAACGUCGGUC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478i-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:17914817-17914875 | - | 111 | 1.04 | UUUUUCAAAUGGUUAACGUCGGUC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478j-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:17914817-17914875 | - | 111 | 1.04 | UUUUUCAAAUGGUUAACGUCGGUC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR6468-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:22323317-22323467 | - | 26 | 0.25 | GGAGUGAUUCAGGGAACCCA | miR6468 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR167c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:22862859-22862947 | + | 64,384 | 605.78 | UGAAGCUGCCAGCAUGAUCUAA | miR167 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6469-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:22868180-22868431 | - | 1,206 | 11.35 | UGGCAGAAAAGGAUUCGUUUA | miR6469 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR166e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:23191840-23191945 | - | 847,679 | 7,975.70 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6457b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:24647697-24647872 | + | 94 | 0.88 | AAGCCGAAGUUGGUUUGCUGCACU | miR6457 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6462d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:24651376-24651508 | + | 30 | 0.28 | AGGGGCAAAAAUGGCAUAAGA | miR6462 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6462e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:24651687-24651799 | + | 121 | 1.14 | UCUCUUAUGCGUUUUUGUCUC | miR6462 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6462b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:24655567-24655699 | + | 27 | 0.25 | AGGGGCAAAAAUGGCAUAAGA | miR6462 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6462f-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:24655882-24655994 | + | 136 | 1.28 | UCUCUUAUGCGUUUUUGUCUC | miR6462 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6462c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:24668282-24668414 | + | 3,200 | 30.11 | AAGGGACAAAAAUGGCAUAAGA | miR6462 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR394b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr05:25090689-25090835 | + | 1,857 | 17.47 | UUGGCAUUCUGUCCACCUCC | miR394 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR160e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:159792-159891 | + | 2,112 | 19.87 | GCAUGAGGGGAGUCGAGCAGG | miR160 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR478p-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:1925606-1925700 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478p-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:1936275-1936369 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478k-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:2566180-2566238 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478l-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:2566180-2566238 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478m-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:2566180-2566238 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478i-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:2566180-2566238 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478j-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:2566180-2566238 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478k-m3 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:2596810-2596868 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478l-m3 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:2596810-2596868 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478m-m3 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:2596810-2596868 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478i-m3 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:2596810-2596868 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478j-m3 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:2596810-2596868 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR396a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:4864030-4864152 | + | 7,688 | 72.34 | UUCCACAGCUUUCUUGAACUG | miR396 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR396d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:4870748-4870913 | - | 4,657 | 43.82 | CUCAAGAAAGCCGUGGGAGA | miR396 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR171c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:4914095-4914198 | - | 354 | 3.33 | UUGAGCCGCGCCAAUAUCACU | miR171 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR169t-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:5781772-5781879 | - | 124 | 1.17 | CCGAGCCAAGAAUGACUUGCCG | miR169 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR169d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:5794392-5794502 | - | 101 | 0.95 | CAGCCAAGGAUGACUUGCCGG | miR169 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR7820-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:6419011-6419090 | . | 35 | 0.33 | AUCAUAUAGGUUGAUCCUCGU | miR7820 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR2111b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:7006191-7006292 | - | 212 | 2.00 | CAGGAUUGGGUAAUUUGCAU | miR2111 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR395b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:7613271-7613368 | + | 876 | 8.24 | CUGAAGUGUUUGGGGGAACUC | miR395 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR390b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:8055616-8055721 | + | 87,884 | 826.89 | AAGCUCAGGAGGGAUAGCGCC | miR390 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR164b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:8220170-8220331 | + | 2,456 | 23.11 | UGGAGAAGCAGGGCACGUGCA | miR164 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR395c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:8614652-8614752 | + | 13 | 0.12 | CUGAAGUGUUUGGGGGAACUC | miR395 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR395d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:8618773-8618873 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR7838-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:9583683-9583935 | - | 26 | 0.25 | ACAUGUGCUGGGUAGGAGGAA | miR7838 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR156a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:20084161-20084261 | - | 45,576 | 428.82 | CUGACAGAAGAGAGUGAGCAC | miR156 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6470-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:20570975-20571112 | - | 129 | 1.21 | AAAUUCAUGAUUGUUUGGUUAUUA | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR6471-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:22184555-22184754 | + | 5,265 | 49.54 | UUUGGGAUCAUCAGGACAGCC | miR6471 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR474a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:23152417-23152520 | . | 33 | 0.31 | AGGGUGCUGGUGAUAGAAGAGAAG | miR474 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR156b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:23735954-23736054 | - | 456 | 4.29 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR319i-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:25744376-25744464 | + | 20 | 0.19 | UUGGACUGAAGGGAGCUCCCAA | miR319 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR396f-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:26064846-26064972 | - | 576 | 5.42 | UUCCACGGCUUUCUUGA | miR396 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR156c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:26631525-26631624 | + | 190,973 | 1,796.84 | CUGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR169h-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr06:27635764-27635881 | + | 317 | 2.98 | UGAAGAGGUAGAGAGUGUAAUU | | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR396g-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr07:9144011-9144178 | + | 17,192 | 161.76 | UUCCACGGCUUUCUUGA | miR396 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR169x-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr07:9527690-9527807 | + | 45 | 0.42 | UAGCCAAGGAUGACUUGCUCGU | miR169 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR169ad-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr07:9531522-9531622 | + | 9 | 0.09 | AGCCAAGGACGACUUGCCCA | miR169 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR169ab-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr07:9532261-9532367 | + | 1 | 0.01 | AUCAUGUUUGGCAGCCAAGUAA | | siRNA22 | miRBase21-BestBlastHit |
| ptc-MIR6473-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr07:10483181-10483396 | - | 580 | 5.46 | UUGUGGAUCCGACCAGGUAUGACAC | miR6473 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR6472-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr07:11299671-11299977 | - | 65 | 0.61 | UAGUGAAUUCUAGGUCUCAAUC | miR6472 | siRNA22 | miRBase21-BestBlastHit |
| ptc-MIR166f-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr07:12409156-12409260 | + | 11,361 | 106.89 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR166q-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr07:12409357-12409507 | + | 95,038 | 894.20 | UCGGACCAGGCUUCAUUCCUU | miR166 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR827-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr07:15484820-15484895 | - | 402 | 3.78 | UUAGAUGACCAUCAACGAAAA | miR827 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6474-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:250589-250693 | . | 4,332 | 40.76 | UGCAGAUCCGUAGAUAGCAAG | miR6474 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR172a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:2013774-2013902 | + | 1,860 | 17.50 | AGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR160b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:2326303-2326400 | - | 5 | 0.05 | CCGUGGAUGGCGUAUGAGGAGG | miR160 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR172i-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:2603156-2603280 | + | 36 | 0.34 | UCUGUUGGUUGAAUGGAAGAG | miR172 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR172h-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:3423592-3423734 | + | 101 | 0.95 | GGAAUCUUGAUGAUGCUGCAG | miR172 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR393a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:3803754-3803838 | + | 457 | 4.30 | AUCAUGCUAUCCCUUUGGAUU | miR393 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR169e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:5569970-5570135 | + | 441 | 4.15 | CAGCCAAGGAUGACUUGCCGG | miR169 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6475-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:6357737-6357857 | + | 141 | 1.33 | UCUUGAGAAGUAAAGAACGAC | miR6475 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR403c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:6598495-6598573 | + | 35,584 | 334.81 | UUUGUGCGUGGAUCUGAGGCC | miR403 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR475d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:8101134-8101236 | - | 697 | 6.56 | AAUGGCCAUUGUAAGAGUAGAA | miR475 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR482a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:8165930-8166036 | + | 39,680 | 373.34 | AGAUGGGAGAGUAUGCAAGAAG | miR482 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR1448-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:8166117-8166201 | + | 93,094 | 875.91 | UAUGGGAGGAUUGGACAGUAC | miR1448 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR1444a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:9457700-9457788 | - | 13,116 | 123.41 | UCCACAUUCGGUCAAUGUUCC | miR1444 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR167g-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:10758777-10758862 | + | 311,731 | 2,933.04 | UGAAGCUGCCAGCAUGAUCUUA | miR167 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR166g-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:11064997-11065099 | - | 227,788 | 2,143.23 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6476a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:11608840-11608938 | - | 41 | 0.39 | GUGGAGAUGAAACAUGAUA | miR6476 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR6476b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:11608840-11608938 | - | 41 | 0.39 | GUGGAGAUGAAACAUGAUA | miR6476 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR6476c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:11608840-11608938 | - | 41 | 0.39 | GUGGAGAUGAAACAUGAUA | miR6476 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR6476a-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:11609095-11609193 | - | 49 | 0.46 | AGUGGAGAUGAAACAUGAUA | miR6476 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR6476b-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:11609095-11609193 | - | 49 | 0.46 | AGUGGAGAUGAAACAUGAUA | miR6476 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR6476c-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:11609095-11609193 | - | 49 | 0.46 | AGUGGAGAUGAAACAUGAUA | miR6476 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR478q-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:11976793-11976887 | - | 5 | 0.05 | AAUUUAGGAGACUCGUCUAAAACA | miR478 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR478s-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:11989011-11989105 | - | 1 | 0.01 | UUUAGGAGACUCGUCUAAAACAUU | miR478 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR475b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:14051170-14051305 | - | 24,846 | 233.77 | UAACAUCUUGAUCAAUGGCCA | miR475 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6477-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:15132581-15132709 | + | 891 | 8.38 | UGAACAGUAGACGUGAAUUAU | miR6477 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR7837-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:16409273-16409435 | . | 15 | 0.14 | AGAAAGUGUGGUGUGUGCUUUAAG | miR7837 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478k-m4 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:18872783-18872841 | + | 1 | 0.01 | UUUUUCAAAUGCUUAACGUCGGUC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478l-m4 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:18872783-18872841 | + | 1 | 0.01 | UUUUUCAAAUGCUUAACGUCGGUC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478m-m4 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:18872783-18872841 | + | 1 | 0.01 | UUUUUCAAAUGCUUAACGUCGGUC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478i-m4 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:18872783-18872841 | + | 1 | 0.01 | UUUUUCAAAUGCUUAACGUCGGUC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478j-m4 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:18872783-18872841 | + | 1 | 0.01 | UUUUUCAAAUGCUUAACGUCGGUC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR6425e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr08:19062293-19062533 | - | 170 | 1.60 | UUGUCUUCCAUGGAAUAGGCAG | miR6425 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6478-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr09:1210799-1210936 | - | 15 | 0.14 | CCGACCUUAGCUCAGUUGGU | miR6478 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR530a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr09:1359968-1360111 | - | 1,091 | 10.27 | AGGUGCAGGUGCAGUUGCAGG | miR530 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR172b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr09:1589921-1590060 | - | 106,045 | 997.76 | AGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR172e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr09:4423816-4423948 | + | 2,966 | 27.91 | GCGGCAGCAUCAAGAUUCACA | miR172 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR478p-m3 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr09:5064957-5065051 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR398c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr09:6766516-6766612 | - | 3,340 | 31.43 | UGUGUUCUCAGGUCGCCCCUG | miR398 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR390c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr09:7498153-7498275 | + | 1,015 | 9.55 | AAGCUCAGGAGGGAUAGCGCC | miR390 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR169v-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr09:7541620-7541729 | + | 3 | 0.03 | UAGCCAAGGAUGACUUGCCC | miR169 | siRNA20 | miRBase21-BestBlastHit |
| ptc-MIR7840-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr09:7718376-7718606 | + | 1,107 | 10.42 | CAAGGAGUAAUUAGUGACAUC | miR7840 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6479-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr09:10679129-10679360 | . | 92 | 0.87 | AUCAAUGAGAAUACUACUGCA | miR6479 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6480-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr09:10839012-10839113 | + | 207 | 1.95 | UUGCUGAAACGAUUGAACUAU | miR6480 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR169ag-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr09:12186410-12186583 | + | 29 | 0.27 | AAGCCAAGGGUGACUUGCCUGA | miR169 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR7831-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:1828870-1829104 | + | 195 | 1.84 | UACAUGUAGAGACCACCAAAC | miR7831 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR169ae-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:7870144-7870250 | + | 283 | 2.66 | UAGCCAAGGACGACUUGCCCACC | miR169 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR166h-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:10235779-10235879 | + | 1,361 | 12.81 | UCUCGGACCAGGCUUCAUUCC | miR166 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR167f-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:10752414-10752500 | - | 85,135 | 801.02 | UGAAGCUGCCAGCAUGAUCUUA | miR167 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6432-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:12082245-12082349 | + | 44 | 0.41 | CGGUUCUAGAGAAAAAGAUGG | miR6432 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR1444d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:12167994-12168080 | + | 39,670 | 373.25 | CACAUUCGGUCAACGUUCGAG | miR1444 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR1444b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:12167995-12168079 | + | 39,670 | 373.25 | CACAUUCGGUCAACGUUCGAG | miR1444 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR1444c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:12167995-12168079 | + | 39,670 | 373.25 | CACAUUCGGUCAACGUUCGAG | miR1444 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR1444e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:12167995-12168080 | + | 39,670 | 373.25 | CACAUUCGGUCAACGUUCGAG | miR1444 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR482d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:13597989-13598159 | - | 2,734 | 25.72 | UUGCCGACCCCACCCAUGCCAA | miR482 | siRNA22 | miRBase21-BestBlastHit |
| ptc-MIR475c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:13692756-13692880 | + | 287 | 2.70 | UGAACAAUGGCCAUUGUAAGA | miR475 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR403b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:15647445-15647544 | - | 407 | 3.83 | UUAGAUUCACGCACAAACUCG | miR403 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6434-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:16163392-16163547 | - | 152 | 1.43 | CUAUGUAUGCUUGACCAAUCA | miR6434 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR398a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:16666847-16666955 | + | 144 | 1.36 | GGAGUGGCUCCAGAGAACACAGG | miR398 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6435-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:18076036-18076143 | . | 3 | 0.03 | AUUGGUAAAUAGAUUGUCAU | miR6435 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR7835-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:18736842-18736943 | + | 57 | 0.54 | UGGAUGGGAUUUUUCGGGAAG | miR7835 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR393b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:18868228-18868311 | - | 398 | 3.75 | AUCAUGCUAUCCCUUUGGAUU | miR393 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR172g-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:19351974-19352116 | - | 284 | 2.67 | GGAAUCUUGAUGAUGCUGCAG | miR172 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR160c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:20626350-20626447 | + | 13,468 | 126.72 | UGCCUGGCUCCCUGUAUGCCA | miR160 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR172c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:20940508-20940635 | - | 2,942 | 27.68 | AGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6436-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr10:22080156-22080227 | - | 118 | 1.11 | UGCGCGACCAGACUCAAUAGCAGG | miR6436 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR171b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:334850-334952 | - | 1,546 | 14.55 | UGAUUGAGCCGUGCCAAUAUC | miR171 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR7813-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:755103-755281 | - | 3,334 | 31.37 | UGGUAAUGCAAGUGUUGCUGGU | miR7813 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR478p-m4 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:1027260-1027354 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR7834-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:1663427-1663481 | - | 316 | 2.97 | UAAUAAAAUCUCGACUAUUAU | miR7834 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6440a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:2861001-2861110 | . | 2 | 0.02 | ACGAGUUUGACCGAGUUUGAUUGA | miR6440 | siRNA23 | miRBase21-BestBlastHit |
| ptc-MIR6440d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:2920000-2920103 | + | 5 | 0.05 | AAAUCAAUCAAACUCGGUCAAACU | miR6440 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR397a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:3507399-3507518 | + | 8,538 | 80.33 | UCAUUGAGUGCAGCGUUGAUG | miR397 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR7819-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:3770746-3770902 | . | 33 | 0.31 | UCUUGAGAACAUGAUGAAUCG | miR7819 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR399j-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:6538007-6538118 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR481d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:10598914-10599109 | - | 1 | 0.01 | ACUUGAGGGGGGGUAUUAGAGAAU | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR156k-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:11382228-11382328 | - | 3,779 | 35.56 | UGACAGAAGAGAGGGAGCAC | miR156 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR6426b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:13698671-13698761 | + | 117 | 1.10 | GUGGAGACAUGGAAGUGAAGA | miR6426 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7842-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:14900597-14900710 | - | 12 | 0.11 | UAAAUCAAGCCCGGUACUUUU | miR7842 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR160d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:17249463-17249565 | - | 159 | 1.50 | GCGUGCGAGGAGCCAAGCAUA | miR160 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR478p-m5 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:17888439-17888533 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6441-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr11:17987120-17987216 | . | 2,545 | 23.95 | AAGUUGACGGAAGGACUACAU | miR6441 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR478p-m6 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:1028267-1028361 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR828a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:1667419-1667574 | - | 66 | 0.62 | UCUUGCUCAAAUGAGUAUUCCA | miR828 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR171j-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:1811637-1811737 | - | 1,275 | 12.00 | CGAGCCGAAUCAAUAUCACUC | miR171 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR171m-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:1811637-1811737 | - | 1,275 | 12.00 | CGAGCCGAAUCAAUAUCACUC | miR171 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR166i-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:2071999-2072101 | - | 11,085 | 104.30 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6442-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:3074100-3074204 | + | 267 | 2.51 | CUGAACGGCUUGAAGGGCACG | miR6442 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR159a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:4736162-4736344 | - | 9,306 | 87.56 | UUUGGAUUGAAGGGAG | miR159 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR156i-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:4939241-4939339 | + | 47 | 0.44 | GCUCUCUAUGCUUCUGCCAUC | miR156 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR319e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:5918396-5918587 | - | 66 | 0.62 | AGCUCCUUUUAGUCCAAUAC | miR319 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR162a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:6004883-6004989 | + | 3,022 | 28.43 | UCGAUAAACCUCUGCAUCCAG | miR162 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6443-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:6113230-6113346 | - | 1 | 0.01 | AUAGAUGAUGGAGGGUAGCCCAAC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR7832-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:6363503-6363560 | . | 36 | 0.34 | ACUGUGGUGUAGGUUGGGAAC | miR7832 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6444-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:7358871-7359071 | + | 42 | 0.40 | UAGGAAAAUUAGAGAUUAUGU | miR6444 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR1445-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:7381249-7381378 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:8533968-8534063 | + | 1,226 | 11.54 | UCGGUCCCUAAAAAUAGAAGACAC | miR478 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:8537367-8537462 | + | 849 | 7.99 | CUUCUAUUUUUAGGGACUGACGUU | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR6445a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:9109803-9109944 | - | 1,145 | 10.77 | UUCAUUCCUCUUCCUAAAAUGG | miR6445 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR171g-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:12562846-12562945 | + | 775 | 7.29 | UGUUGGGAUGGCUCAAUCAUG | miR171 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR1446b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:13184305-13184407 | - | 1,920 | 18.07 | UUCUGAACUCUCUCCCUCAAC | miR1446 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR477a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:13184521-13184605 | - | 573 | 5.39 | AUCUCCCUCAGAGGCUUCCAA | miR477 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR1446a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:13188958-13189062 | - | 5,674 | 53.39 | CGGUUGAGGUGAGGGGUUCAGA | miR1446 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR477b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:13189177-13189261 | - | 862 | 8.11 | GGAUGCCUUUGGGUGAGAUUG | miR477 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR1446c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:13298946-13299050 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6446-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:14946410-14946631 | + | 921 | 8.67 | UUGCUGGGUCCUGAUGAUGGA | miR6446 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR399i-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:15164838-15164945 | + | 8 | 0.08 | UGCCAAAGGAGAGUUGCCCUA | miR399 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR399h-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr12:15171086-15171217 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR472b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:103700-103770 | + | 23,091 | 217.26 | UGGGUGAGUGGGGAAGAUAAC | miR472 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7821-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:815294-815404 | - | 127 | 1.20 | AGAUGGGCAUCGGCAUUGUGA | miR7821 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR164c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:963532-963613 | - | 10,593 | 99.67 | UGGAGAAGCAGGGCACGUGCA | miR164 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR167h-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:2783888-2783978 | + | 395 | 3.72 | AGAUCAUGUGGCAGUUUCACC | miR167 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR7833-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:3792138-3792224 | + | 89 | 0.84 | UAAUUAGAACUCAUACUAGAC | miR7833 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR481a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:3829327-3829419 | + | 1 | 0.01 | UUAUUCUCUAACAUCUUUGACCAU | miR481 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR166o-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:4144281-4144600 | + | 564 | 5.31 | UCGGACCAGGCUUCAUUCCUU | miR166 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR169b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:4599494-4599606 | + | 4,242 | 39.91 | GGCAGGUUGUUCUUGGCUAC | miR169 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR478k-m5 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:5614953-5615011 | + | 41 | 0.39 | UUUUUUAAAUGAUUAACGUCGGUC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478l-m5 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:5614953-5615011 | + | 41 | 0.39 | UUUUUUAAAUGAUUAACGUCGGUC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478m-m5 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:5614953-5615011 | + | 41 | 0.39 | UUUUUUAAAUGAUUAACGUCGGUC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478i-m5 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:5614953-5615011 | + | 41 | 0.39 | UUUUUUAAAUGAUUAACGUCGGUC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478j-m5 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:5614953-5615011 | + | 41 | 0.39 | UUUUUUAAAUGAUUAACGUCGGUC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478p-m7 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:5625857-5625951 | + | 4 | 0.04 | UUUUUUAAAUGAUUAACGUCGGUC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR7824-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:7903671-7903785 | - | 18 | 0.17 | UUGAGAAAAGUCAAUCGGACC | miR7824 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR481c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:8267824-8268018 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR319f-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:9936738-9936939 | - | 472 | 4.44 | UGUGAAUGAUGCGGGAGAUAA | miR319 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR7827-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:11846893-11846989 | - | 476 | 4.48 | UAGGACCAAGUUUUUUGGAAA | miR7827 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR474c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:13386322-13386395 | + | 24 | 0.23 | AGCAUUGGAUUUGACAGUAAAGCU | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR1447-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:15189762-15189877 | + | 10,209 | 96.06 | CAGAAUUGCAGUGCCUUGAUU | miR1447 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR319c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr13:16213119-16213314 | + | 1,637 | 15.40 | UGUGAAUGAUGCGGGAGAUAA | miR319 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR478p-m8 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:2339958-2340052 | - | 2 | 0.02 | AGGAGAGUUACGUCUGGAUUACCA | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR6447-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:5981954-5982156 | - | 75 | 0.71 | UUGACGAAAUGUGACGACUAC | miR6447 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR159c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:7298006-7298206 | + | 4 | 0.04 | UUGGAGUGAAGGGAGCUCGA | miR159 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR159e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:7302928-7303119 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR159d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:7304607-7304800 | + | 1,236 | 11.63 | UUUGCAUGGCCAAGGAGACGU | miR159 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR473a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:7573977-7574076 | + | 489,152 | 4,602.37 | UGAGGCCUUUGGGGGAGAGUGG | miR477 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6448-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:7860841-7860985 | + | 5,435 | 51.14 | UAGGCACAGAAUUAACAAGGC | miR6448 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR480-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:7958959-7959098 | . | 47 | 0.44 | AAGCAGUCAGGUGUGGGUCUAUUA | miR480 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR166j-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:8105974-8106116 | + | 3,110 | 29.26 | UCGGACCAGGCUUCAUUCCCC | miR166 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR166k-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:8105974-8106116 | + | 3,110 | 29.26 | UCGGACCAGGCUUCAUUCCCC | miR166 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR166j-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:8119900-8120042 | + | 3 | 0.03 | GGUUGUCGGACCAGGCUUCAUU | miR166 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR166k-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:8119900-8120042 | + | 3 | 0.03 | GGUUGUCGGACCAGGCUUCAUU | miR166 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR164d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:9826189-9826287 | + | 2,157 | 20.30 | UGGAGAAGCAGGGCACGUGCA | miR164 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR160g-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:13846520-13846617 | - | 24 | 0.23 | UUGGCAUCAGAGGAGUCAUG | miR160 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR7812-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr14:14138761-14138871 | - | 184 | 1.73 | GUGCUGUUAUGAAUUGAUGGAGUG | miR7812 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR166l-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:436396-436492 | - | 15,779 | 148.46 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR171l-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:544184-544295 | + | 18,094 | 170.24 | CGAGCCGAAUCAAUAUCACUC | miR171 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6449-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:572481-572568 | + | 178 | 1.68 | CAUGAUUCUGAAUAACGGUUU | miR6449 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR828b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:670432-670579 | + | 71 | 0.67 | UCAUUCGAGCAAGAAAUAUUA | miR828 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7817a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:1513315-1513548 | - | 1,830 | 17.22 | UUUGGUUAUUGUCUCGAGACA | miR7817 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR7830-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:2250964-2251034 | + | 29 | 0.27 | UGAUCUAGAGAACCGUUGCUU | miR7830 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR7830-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:2251102-2251178 | . | 22 | 0.21 | UGAUCUAGAGAACCGUUGCUU | miR7830 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR166m-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:2477719-2477823 | + | 1,243,113 | 11,696.29 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR171k-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:3164288-3164365 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6451-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:3513707-3513784 | . | 49 | 0.46 | AUGUCAGAUCAUGUUAGGUAU | miR6451 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR159b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:3960940-3961126 | - | 304,491 | 2,864.92 | UUUGGAUUGAAGGGAG | miR159 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR156j-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:4227002-4227101 | - | 21,164,971 | 199,138.53 | UUGACAGAAGAUAGAGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6450a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:5389195-5389339 | . | 41 | 0.39 | GUUCUUUGUCAGGACUCAAGGCUA | miR6450 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR162b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:6734671-6734777 | + | 14,016 | 131.88 | UCGAUAAACCUCUGCAUCCAG | miR162 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR319h-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:7415903-7416097 | + | 46 | 0.43 | AUUGGACUGAAGGGAGCUCC | miR319 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR6445b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:8561654-8561797 | + | 2,181 | 20.52 | UUCAUUCCUCUUCCUAAAAUGG | miR6445 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR171h-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:11798526-11798625 | + | 273 | 2.57 | UGUUGGGAUGGCUCAAUCAUA | miR171 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR169u-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:12187400-12187521 | + | 3,711 | 34.92 | UAGCCAAGGACGACUUGCCUA | miR169 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR169r-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:12195358-12195476 | + | 5 | 0.05 | CAUAGGCAGUCUACUUUGGU | miR169 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR1446d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:12441979-12442083 | - | 3,421 | 32.19 | CGAGGUGAGAGGUUCAGGAAA | miR1446 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR477c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:12442195-12442304 | - | 1,232 | 11.59 | GGAAACCUUUUGUGGGGGUUU | miR477 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR477d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:12599960-12600086 | + | 590 | 5.55 | UGGACUCCUUUGGGGAGAUGG | miR477 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR1446e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:12601751-12601857 | + | 7 | 0.07 | CGAGGCGAGGGGGUUUCGGAAAA | miR1446 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR478j-m6 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:13374839-13374897 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478k-m6 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:13374839-13374897 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478l-m6 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:13374839-13374897 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478m-m6 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:13374839-13374897 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478i-m6 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:13374839-13374897 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478p-m9 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:13772988-13773082 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR7829-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:14146065-14146228 | . | 78 | 0.73 | ACACAGAAACUCCAAGCCCAC | miR7829 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR393c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr15:15036823-15036929 | - | 2,038 | 19.18 | UCCAAAGGGAUCGCAUUGAUCU | miR393 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6439a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:74712-74973 | . | 56 | 0.53 | UAGUGAUGGCUUCUGCUUCUU | miR6439 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6439b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:74724-74961 | . | 56 | 0.53 | UAGUGAUGGCUUCUGCUUCUU | miR6439 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR160f-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:125053-125152 | + | 26 | 0.25 | UGCCUGGCUCCCUGAAUGCCA | miR160 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR478p-m11 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:2442417-2442511 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478p-m12 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:2454080-2454174 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR7826-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:2739835-2739933 | . | 20 | 0.19 | UUACCAAGUUUCAAAUUCUCA | miR7826 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR160h-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:7180197-7180294 | - | 1 | 0.01 | UGCCUGGCUCCCUGCAUGCCA | miR160 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR2111a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:10213295-10213404 | - | 54 | 0.51 | GUCCUUGGGUUGCAGAUUAUC | miR2111 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR7814-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:11162826-11163036 | - | 572 | 5.38 | AAAAUCUUGAACAUACGCAUCCAA | | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR478p-m10 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:12687265-12687359 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR390d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:12896830-12896935 | + | 8,116 | 76.36 | AAGCUCAGGAGGGAUAGCGCC | miR390 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR164e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:13268997-13269151 | + | 66,703 | 627.60 | UGGAGAAGCAGGGCACGUGCA | miR164 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR395k-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:14153951-14154102 | - | 598 | 5.63 | CUGAAGUGUUUGGGGGAACUC | miR395 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR395e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:14153971-14154083 | - | 598 | 5.63 | CUGAAGUGUUUGGGGGAACUC | miR395 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR395f-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:14153971-14154083 | - | 598 | 5.63 | CUGAAGUGUUUGGGGGAACUC | miR395 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR395g-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:14155140-14155241 | + | 101 | 0.95 | CUGAAGUGUUUGGGGGAACUC | miR395 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR395h-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:14155140-14155241 | + | 101 | 0.95 | CUGAAGUGUUUGGGGGAACUC | miR395 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR395j-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:14155140-14155241 | + | 101 | 0.95 | CUGAAGUGUUUGGGGGAACUC | miR395 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR395g-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:14159565-14159666 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR395h-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:14159565-14159666 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR395i-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr16:14159565-14159666 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478p-m13 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:1653363-1653457 | . | 4 | 0.04 | UUUCAAAUGCUUAACGUCGGUCCC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR6450b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:1998143-1998308 | + | 25 | 0.24 | CGAACACAGGACUCAAGGCUA | miR6450 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6452-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:5279672-5279789 | - | 170 | 1.60 | UGCAAAGGUAACUGAGACAAU | miR6452 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR169l-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:5766969-5767111 | - | 265 | 2.49 | GGCAGUCUCCUUGGCUAAUC | miR169 | siRNA20 | miRBase21-BestBlastHit |
| ptc-MIR169m-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:5767273-5767391 | - | 139 | 1.31 | UAGCCAAGGAUGACUUGCCUG | miR169 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR3627b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:8830023-8830166 | + | 550 | 5.18 | UGUCGCAGGAGAGAUGGCGCUA | miR3627 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR3627a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:8843461-8843576 | + | 60,390 | 568.20 | UCUGUCGCUGGAAAGAUGGUAC | miR3627 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR169f-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:10307094-10307332 | + | 2,532 | 23.82 | CAGCCAAGGAUGACUUGCCGG | miR169 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR482c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:11697042-11697212 | - | 651 | 6.13 | GCAGAUUUCCAGUAGUUCCUCCC | miR482 | siRNA23 | miRBase21-BestBlastHit |
| ptc-MIR478j-m7 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:12081874-12081932 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478k-m7 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:12081874-12081932 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478l-m7 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:12081874-12081932 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478m-m7 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:12081874-12081932 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478i-m7 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:12081874-12081932 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR482b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:13392488-13392637 | + | 7,068 | 66.50 | UGGGCAUGAGGUGUUUGGCAA | miR482 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR156g-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:13418464-13418566 | + | 34,817 | 327.59 | UUGACAGAAGAUAGAGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR156h-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:13418464-13418566 | + | 34,817 | 327.59 | UUGACAGAAGAUAGAGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR475a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr17:14311121-14311244 | - | 6,683 | 62.88 | UAACAUCUUGAUCAAUGGCCA | miR475 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR169s-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:268217-268336 | + | 679 | 6.39 | UGAAGAGGUAGAGAGUGUGAUU | | siRNA22 | miRBase21-BestBlastHit |
| ptc-MIR7841-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:1025459-1025614 | - | 155 | 1.46 | GGGGGUUGCUGUCAAGCAUAA | miR7841 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR156e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:1583358-1583457 | - | 2,325,885 | 21,883.96 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR478j-m8 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:3501298-3501356 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478k-m8 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:3501298-3501356 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478l-m8 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:3501298-3501356 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478m-m8 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:3501298-3501356 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478i-m8 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:3501298-3501356 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR6454-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:9352190-9352278 | + | 104 | 0.98 | CUUGUAACCUGAGUAGAGGCA | miR6454 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR6455-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:13387064-13387290 | - | 76 | 0.72 | AGUGGAUUUCAAAUGUUGAGGAUG | miR6455 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR156f-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:13566875-13566975 | - | 80,577 | 758.14 | CUGACAGAAGAGAGUGAGCAC | miR156 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR396b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:14909787-14909918 | + | 25,278 | 237.84 | UUCCACAGCUUUCUUGAACUG | miR396 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR396e-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:14916706-14916850 | - | 84,880 | 798.63 | CUCAAGAAAGCUGUGGGAGA | miR396 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR171d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:14956618-14956717 | - | 364 | 3.43 | UUGAGCCGCGCCAAUAUCACU | miR171 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR478p-m14 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:16167304-16167398 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478p-m15 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:16177420-16177514 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR169aa-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:16370855-16370963 | - | 10,827 | 101.87 | CCAGGUCGUUCUUGGCUCAAC | miR169 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR169n-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:16375673-16375779 | - | 2,502 | 23.54 | UGAGCCAAGGAUGACUUGCCG | miR169 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR169z-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:16381172-16381289 | - | 41 | 0.39 | CAGCCAAGAAUGAUUUGCCGG | miR169 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR169p-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr18:16384470-16384633 | - | 1 | 0.01 | AGCCAAGGAUGACUUGCCGGCAU | miR169 | siRNA23 | miRBase21-BestBlastHit |
| ptc-MIR481b-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:1103297-1103514 | + | 52 | 0.49 | AAACUGUUAGGUAAGGUCUCAGGA | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478p-m16 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:2329420-2329514 | . | 2 | 0.02 | CUUCUAAUUUUUAGGGACU | miR478 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR6456-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:3280018-3280109 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR169c-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:3663039-3663140 | - | 14 | 0.13 | GCAGGUUUUCCUUGGCUAC | miR169 | OtherRNA | miRBase21-BestBlastHit |
| ptc-MIR166n-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:4229729-4230056 | - | 656 | 6.17 | UCUCGGACCAGGCUUCAUUCC | miR166 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR319g-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:9528187-9528390 | + | 234 | 2.20 | UGUGAAUGAUGCGGGAGAUAAU | miR319 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR478j-m9 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:13962010-13962068 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478k-m9 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:13962010-13962068 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478l-m9 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:13962010-13962068 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478m-m9 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:13962010-13962068 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478i-m9 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:13962010-13962068 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478n-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:14406415-14406509 | + | 8 | 0.08 | UAAAAAGGAGAGUUACGUCUGGGU | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR476a-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:15292461-15292556 | - | 1,913 | 18.00 | UUGCAAAGAUAGAUUUACUAGC | miR476 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR319d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | Chr19:15787372-15787564 | + | 143 | 1.35 | UUGGACUGAAGGGAGCUCCC | miR319 | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR169g-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_127:4425-4530 | - | 15 | 0.14 | GGCAGGUUGUCCUUGGCUAA | miR169 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR478h-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_145:8551-8645 | + | 5 | 0.05 | AGGAGACACGUUAAAAAUGACACC | miR478 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR478h-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_145:19529-19623 | + | 8 | 0.08 | AGGAGACACGUUAAAAAUGACACC | miR478 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR167d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_1722:739-843 | - | 53,628 | 504.58 | UGAAGCUGCCAGCAUGAUCUA | miR167 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR6424-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_2374:173-260 | + | 522 | 4.91 | UGGUGCCACGCUGUGUGCGUC | miR536 | MIRNA | miRBase21-BestBlastHit |
| ptc-MIR478p-m17 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_24:317727-317821 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478p-m18 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_24:328862-328956 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR156d-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_28:190974-191074 | + | 2 | 0.02 | GUGACAGAAGAGAGUGAGCAC | miR156 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR478p-m19 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_34:76240-76334 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478f-m1 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_37:181102-181164 | + | 19 | 0.18 | UCGGUCCCUAAAAAUAGAAGACAU | miR478 | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR6480-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_39:333619-333720 | - | 198 | 1.86 | UUGCUGAAACGAUUGAACUAU | miR6480 | nearMIRNA | miRBase21-BestBlastHit |
| ptc-MIR478p-m20 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_397:17840-17934 | + | 2 | 0.02 | UUUAUAAAUGAUUAACGUCGGUCC | | siRNA24 | miRBase21-BestBlastHit |
| ptc-MIR6456-m2 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_50:13169-13260 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478j-m10 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_737:3265-3323 | . | 2 | 0.02 | UAGGGACCGACGUUAAGCAUU | | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR478k-m10 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_737:3265-3323 | . | 2 | 0.02 | UUCAAAUGCUUAACGUCGGUC | | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR478l-m10 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_737:3265-3323 | . | 2 | 0.02 | UAGGGACCGACGUUAAGCAUU | | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR478m-m10 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_737:3265-3323 | . | 2 | 0.02 | UUCAAAUGCUUAACGUCGGUC | | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR478i-m10 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_737:3265-3323 | . | 2 | 0.02 | UAGGGACCGACGUUAAGCAUU | | siRNA21 | miRBase21-BestBlastHit |
| ptc-MIR478p-m21 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_92:9941-10035 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| ptc-MIR478p-m22 | Populus trichocarpa (Black Cottonwood) 3.0 | scaffold_92:35441-35535 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
Data from Lunardon et al. (2020)