het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Carica papaya (Papaya) genome build 0.4 (cpa-b0.4)

Version v0.4 of Carica papaya cv. SunUp from Phytozome

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
cpa-MIR8141-m1Carica papaya (Papaya) 0.4supercontig_10:1302039-1302112+20.04CUGGUAAAAGAGGAAAUCUGUUGUsiRNA21miRBase21-BestBlastHit
cpa-MIR5211-m1Carica papaya (Papaya) 0.4supercontig_14:603959-604057-711.25GUGCCGUCGCACUGUGACAAGmiR5211siRNA21miRBase21-BestBlastHit
cpa-MIR171b-m1Carica papaya (Papaya) 0.4supercontig_152:127579-127653-4898.58UGAUUGAGCCGUGCCAAUAUCmiR171siRNA21miRBase21-BestBlastHit
cpa-MIR395a-m1Carica papaya (Papaya) 0.4supercontig_183:235084-235140.240.42CUGAAGUGUUUGGGGGAACUCmiR395siRNA21miRBase21-BestBlastHit