Data from Lunardon et al. (2020)

Annotations viewer

Genome

Carica papaya (Papaya) genome build 0.4 (cpa-b0.4)

Version v0.4 of Carica papaya cv. SunUp from Phytozome

Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
cpa-MIR171a-m1	Carica papaya (Papaya) 0.4	supercontig_13:901153-901232	-	114	2.00	UUGAGCCGUGCCAAUAUCACG	miR171	nearMIRNA	miRBase21-BestBlastHit
cpa-MIR156e-m1	Carica papaya (Papaya) 0.4	supercontig_170:116121-116215	-	335	5.88	UUGACAGAAGAUAGAGAGCAC	miR156	nearMIRNA	miRBase21-BestBlastHit
cpa-MIR395d-m1	Carica papaya (Papaya) 0.4	supercontig_183:228241-228308	-	6	0.11	CUGAAGUGUUUGGGGGAACUC	miR395	nearMIRNA	miRBase21-BestBlastHit
cpa-MIR8136-m1	Carica papaya (Papaya) 0.4	supercontig_24:2325165-2325246	-	1,607	28.19	UAAAGUGGAAUUGGGAUAAUA	miR8136	nearMIRNA	miRBase21-BestBlastHit
cpa-MIR156d-m1	Carica papaya (Papaya) 0.4	supercontig_28:1942488-1942575	-	2,516	44.14	UGACAGAAGAGAGUGAGCAC	miR156	nearMIRNA	miRBase21-BestBlastHit
cpa-MIR8152-m1	Carica papaya (Papaya) 0.4	supercontig_4:896879-896957	+	37	0.65	UUGGACUGCUAGGUGGCCCAU	miR8152	nearMIRNA	miRBase21-BestBlastHit
cpa-MIR8135-m1	Carica papaya (Papaya) 0.4	supercontig_42:51085-51147	+	28	0.49	AGGAUUUUGCAGGGUUGAUG	miR8135	nearMIRNA	miRBase21-BestBlastHit
cpa-MIR8139a-m1	Carica papaya (Papaya) 0.4	supercontig_4264:4995-5052	-	14	0.25	UUUCCACGAUCUGUGCCUUUGU	miR8139	nearMIRNA	miRBase21-BestBlastHit
cpa-MIR8148-m1	Carica papaya (Papaya) 0.4	supercontig_427:17754-17810	-	48	0.84	UGACUGGGUCUGCUGACGUGGCAU	miR8148	nearMIRNA	miRBase21-BestBlastHit
cpa-MIR8139d-m4	Carica papaya (Papaya) 0.4	supercontig_54:1440467-1440524	-	11	0.19	UCCUGGCUGAGGACGGGUGUUGAA	miR8139	nearMIRNA	miRBase21-BestBlastHit
cpa-MIR8139e-m4	Carica papaya (Papaya) 0.4	supercontig_54:1440467-1440524	-	11	0.19	UCCUGGCUGAGGACGGGUGUUGAA	miR8139	nearMIRNA	miRBase21-BestBlastHit
cpa-MIR156c-m1	Carica papaya (Papaya) 0.4	supercontig_7:1524401-1524487	+	27	0.47	UGACAGAAGAGAGUGAGCAC	miR156	nearMIRNA	miRBase21-BestBlastHit
cpa-MIR171c-m1	Carica papaya (Papaya) 0.4	supercontig_70:1070976-1071067	-	31	0.54	UGAUUGAGCCGUGCCAAUAUC	miR171	nearMIRNA	miRBase21-BestBlastHit
cpa-MIR8138-m1	Carica papaya (Papaya) 0.4	supercontig_80:269343-269444	-	55	0.97	UAAAGAUGGUAACAAAGGAUAA	miR8138	nearMIRNA	miRBase21-BestBlastHit