| Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
|---|
| cpa-MIR172a-m1 | Carica papaya (Papaya) 0.4 | supercontig_1:5256146-5256322 | + | 32,032 | 561.92 | GGAAUCUUGAUGAUGCUGCAG | miR172 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR8141-m1 | Carica papaya (Papaya) 0.4 | supercontig_10:1302039-1302112 | + | 2 | 0.04 | CUGGUAAAAGAGGAAAUCUGUUGU | | siRNA21 | miRBase21-BestBlastHit |
| cpa-MIR160a-m1 | Carica papaya (Papaya) 0.4 | supercontig_102:191505-191586 | - | 75 | 1.32 | UGCCUGGCUCCCUGUAUGCCA | miR160 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR166d-m1 | Carica papaya (Papaya) 0.4 | supercontig_113:681022-681147 | - | 175,566 | 3,079.84 | UCGGACCAGGCUUCAUUCCCG | miR166 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR8143-m1 | Carica papaya (Papaya) 0.4 | supercontig_1165:17174-17232 | . | 7 | 0.12 | UCUCAGGAUAUCGAGCAAGGCA | | siRNA24 | miRBase21-BestBlastHit |
| cpa-MIR167d-m1 | Carica papaya (Papaya) 0.4 | supercontig_117:862508-862587 | + | 35,155 | 616.70 | UGAAGCUGCCAGCAUGAUCUGA | miR167 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR166e-m1 | Carica papaya (Papaya) 0.4 | supercontig_1181:12909-12996 | + | 344,458 | 6,042.60 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR169-m1 | Carica papaya (Papaya) 0.4 | supercontig_119:60002-60098 | - | 18 | 0.32 | CAGCCAAGAAUGACUUGCCG | miR169 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR8139d-m1 | Carica papaya (Papaya) 0.4 | supercontig_121:284608-284665 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| cpa-MIR8139e-m1 | Carica papaya (Papaya) 0.4 | supercontig_121:284608-284665 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| cpa-MIR156a-m1 | Carica papaya (Papaya) 0.4 | supercontig_127:309674-309755 | + | 11,482 | 201.42 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR162a-m1 | Carica papaya (Papaya) 0.4 | supercontig_13:841212-841320 | + | 46,213 | 810.68 | UCGAUAAACCUCUGCAUCCAG | miR162 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR171a-m1 | Carica papaya (Papaya) 0.4 | supercontig_13:901153-901232 | - | 114 | 2.00 | UUGAGCCGUGCCAAUAUCACG | miR171 | nearMIRNA | miRBase21-BestBlastHit |
| cpa-MIR8134-m1 | Carica papaya (Papaya) 0.4 | supercontig_137:582833-582933 | + | 287 | 5.04 | UGAGAAUUAUGCGGAGGAUGU | miR8134 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR5211-m1 | Carica papaya (Papaya) 0.4 | supercontig_14:603959-604057 | - | 71 | 1.25 | GUGCCGUCGCACUGUGACAAG | miR5211 | siRNA21 | miRBase21-BestBlastHit |
| cpa-MIR166a-m1 | Carica papaya (Papaya) 0.4 | supercontig_144:273296-273419 | - | 70,338 | 1,233.89 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR171b-m1 | Carica papaya (Papaya) 0.4 | supercontig_152:127579-127653 | - | 489 | 8.58 | UGAUUGAGCCGUGCCAAUAUC | miR171 | siRNA21 | miRBase21-BestBlastHit |
| cpa-MIR8139c-m1 | Carica papaya (Papaya) 0.4 | supercontig_153:218942-218999 | . | 14 | 0.25 | UGGCUGAGGACGGGUGUUGAAGCU | miR8139 | siRNA24 | miRBase21-BestBlastHit |
| cpa-MIR8150-m1 | Carica papaya (Papaya) 0.4 | supercontig_167:202846-202918 | + | 15 | 0.26 | AAAACCUGAGUCAGAUGAUGAGCG | miR8150 | siRNA24 | miRBase21-BestBlastHit |
| cpa-MIR156e-m1 | Carica papaya (Papaya) 0.4 | supercontig_170:116121-116215 | - | 335 | 5.88 | UUGACAGAAGAUAGAGAGCAC | miR156 | nearMIRNA | miRBase21-BestBlastHit |
| cpa-MIR395d-m1 | Carica papaya (Papaya) 0.4 | supercontig_183:228241-228308 | - | 6 | 0.11 | CUGAAGUGUUUGGGGGAACUC | miR395 | nearMIRNA | miRBase21-BestBlastHit |
| cpa-MIR395c-m1 | Carica papaya (Papaya) 0.4 | supercontig_183:234094-234161 | - | 11 | 0.19 | CUGAAGUGUUUGGGGGAACUC | miR395 | OtherRNA | miRBase21-BestBlastHit |
| cpa-MIR395b-m1 | Carica papaya (Papaya) 0.4 | supercontig_183:234880-234936 | + | 20 | 0.35 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR395a-m1 | Carica papaya (Papaya) 0.4 | supercontig_183:235084-235140 | . | 24 | 0.42 | CUGAAGUGUUUGGGGGAACUC | miR395 | siRNA21 | miRBase21-BestBlastHit |
| cpa-MIR159b-m1 | Carica papaya (Papaya) 0.4 | supercontig_184:39571-39747 | - | 1,251 | 21.95 | CUUGGAUUGAAGGGAGCUCC | miR159 | OtherRNA | miRBase21-BestBlastHit |
| cpa-MIR8145-m1 | Carica papaya (Papaya) 0.4 | supercontig_1871:9347-9450 | . | 11 | 0.19 | CAAAUAAACAGAUAGAAUGACAGC | miR8145 | siRNA24 | miRBase21-BestBlastHit |
| cpa-MIR393-m1 | Carica papaya (Papaya) 0.4 | supercontig_19:1806797-1806919 | - | 231 | 4.05 | AUCAUGCUAUCCCUUUGGAUU | miR393 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR160b-m1 | Carica papaya (Papaya) 0.4 | supercontig_192:167562-167645 | + | 112 | 1.97 | UGCCUGGCUCCCUGUAUGCCA | miR160 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR160e-m1 | Carica papaya (Papaya) 0.4 | supercontig_192:167562-167645 | + | 112 | 1.97 | UGCCUGGCUCCCUGUAUGCCA | miR160 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR394a-m1 | Carica papaya (Papaya) 0.4 | supercontig_2:17562-17633 | + | 1,848 | 32.42 | UUGGCAUUCUGUCCACCUCC | miR394 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR390a-m1 | Carica papaya (Papaya) 0.4 | supercontig_2:4098408-4098514 | - | 7,570 | 132.80 | AAGCUCAGGAGGGAUAGCGCC | miR390 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR8136-m1 | Carica papaya (Papaya) 0.4 | supercontig_24:2325165-2325246 | - | 1,607 | 28.19 | UAAAGUGGAAUUGGGAUAAUA | miR8136 | nearMIRNA | miRBase21-BestBlastHit |
| cpa-MIR8147-m1 | Carica papaya (Papaya) 0.4 | supercontig_242:16147-16200 | . | 7 | 0.12 | GCAAAUGAGUCGAAUUGUCUGAUC | | siRNA24 | miRBase21-BestBlastHit |
| cpa-MIR8139d-m2 | Carica papaya (Papaya) 0.4 | supercontig_2546:7338-7395 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| cpa-MIR8139e-m2 | Carica papaya (Papaya) 0.4 | supercontig_2546:7338-7395 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| cpa-MIR394b-m1 | Carica papaya (Papaya) 0.4 | supercontig_26:1711001-1711096 | - | 8,547 | 149.93 | UUGGCAUUCUGUCCACCUCC | miR394 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR160d-m1 | Carica papaya (Papaya) 0.4 | supercontig_27:1977834-1977918 | + | 1,196 | 20.98 | UGCCUGGCUCCCUGAAUGCCA | miR160 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR156d-m1 | Carica papaya (Papaya) 0.4 | supercontig_28:1942488-1942575 | - | 2,516 | 44.14 | UGACAGAAGAGAGUGAGCAC | miR156 | nearMIRNA | miRBase21-BestBlastHit |
| cpa-MIR477-m1 | Carica papaya (Papaya) 0.4 | supercontig_282:4059-4155 | - | 326 | 5.72 | AUUGGAGGACUUUGGGGGAGC | miR477 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR159a-m1 | Carica papaya (Papaya) 0.4 | supercontig_3:3080249-3080418 | + | 673,919 | 11,822.12 | UUUGGAUUGAAGGGAGCUCUA | miR159 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR156f-m1 | Carica papaya (Papaya) 0.4 | supercontig_3:3349061-3349163 | - | 7,654 | 134.27 | UUGACAGAAGAUAGAGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR319-m1 | Carica papaya (Papaya) 0.4 | supercontig_3:3671490-3671701 | - | 44,524 | 781.06 | AUUGGACUGAAGGGAGCUCC | miR319 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR8140-m1 | Carica papaya (Papaya) 0.4 | supercontig_30:712922-713064 | + | 13,257 | 232.56 | CUUUUCAAGACUUCAGCUUCA | miR8140 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR8155-m1 | Carica papaya (Papaya) 0.4 | supercontig_31:780915-780980 | + | 27 | 0.47 | UAACCUGGCUCUGAUACCA | miR8155 | OtherRNA | miRBase21-BestBlastHit |
| cpa-MIR8141-m2 | Carica papaya (Papaya) 0.4 | supercontig_32:351136-351209 | - | 1 | 0.02 | GGGGACGGCCCUAGAAUCAGGUU | | siRNA23 | miRBase21-BestBlastHit |
| cpa-MIR8139d-m3 | Carica papaya (Papaya) 0.4 | supercontig_32:356756-356813 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| cpa-MIR8139e-m3 | Carica papaya (Papaya) 0.4 | supercontig_32:356756-356813 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| cpa-MIR164d-m1 | Carica papaya (Papaya) 0.4 | supercontig_327:43488-43555 | + | 492 | 8.63 | UGGAGAAGCAGGGCACGUGCA | miR164 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR164a-m1 | Carica papaya (Papaya) 0.4 | supercontig_327:43490-43557 | + | 492 | 8.63 | UGGAGAAGCAGGGCACGUGCA | miR164 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR164b-m1 | Carica papaya (Papaya) 0.4 | supercontig_33:1000663-1000759 | + | 2,506 | 43.96 | UGGAGAAGCAGGGCACGUGCA | miR164 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR398-m1 | Carica papaya (Papaya) 0.4 | supercontig_34:1614401-1614506 | + | 68,628 | 1,203.90 | UGUGUUCUCAGGUCGCCCCUG | miR398 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR8151-m1 | Carica papaya (Papaya) 0.4 | supercontig_3559:5240-5326 | . | 32 | 0.56 | AAACUGACCUAUAGAGACAAUAGC | | siRNA24 | miRBase21-BestBlastHit |
| cpa-MIR8152-m1 | Carica papaya (Papaya) 0.4 | supercontig_4:896879-896957 | + | 37 | 0.65 | UUGGACUGCUAGGUGGCCCAU | miR8152 | nearMIRNA | miRBase21-BestBlastHit |
| cpa-MIR8135-m1 | Carica papaya (Papaya) 0.4 | supercontig_42:51085-51147 | + | 28 | 0.49 | AGGAUUUUGCAGGGUUGAUG | miR8135 | nearMIRNA | miRBase21-BestBlastHit |
| cpa-MIR395e-m1 | Carica papaya (Papaya) 0.4 | supercontig_42:185631-185703 | + | 1,009 | 17.70 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR8139a-m1 | Carica papaya (Papaya) 0.4 | supercontig_4264:4995-5052 | - | 14 | 0.25 | UUUCCACGAUCUGUGCCUUUGU | miR8139 | nearMIRNA | miRBase21-BestBlastHit |
| cpa-MIR8148-m1 | Carica papaya (Papaya) 0.4 | supercontig_427:17754-17810 | - | 48 | 0.84 | UGACUGGGUCUGCUGACGUGGCAU | miR8148 | nearMIRNA | miRBase21-BestBlastHit |
| cpa-MIR167c-m1 | Carica papaya (Papaya) 0.4 | supercontig_44:1619888-1619960 | + | 10,244 | 179.70 | UGAAGCUGCCAGCAUGAUCUU | miR167 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR396-m1 | Carica papaya (Papaya) 0.4 | supercontig_46:319934-320015 | - | 7,522 | 131.95 | GUUCAAUAAAGCUGUGGGAAG | miR396 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR156b-m1 | Carica papaya (Papaya) 0.4 | supercontig_46:1383646-1383727 | - | 13,872 | 243.35 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR390b-m1 | Carica papaya (Papaya) 0.4 | supercontig_5:1983245-1983317 | + | 153,985 | 2,701.26 | AAGCUCAGGAGGGAUAGCGCC | miR390 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR8141-m3 | Carica papaya (Papaya) 0.4 | supercontig_50:1432738-1432811 | | 0 | 0.00 | | | NotExpressed | miRBase21-BestBlastHit |
| cpa-MIR167a-m1 | Carica papaya (Papaya) 0.4 | supercontig_52:1082176-1082260 | + | 2,785 | 48.86 | UGAAGCUGCCAGCAUGAUCUA | miR167 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR167b-m1 | Carica papaya (Papaya) 0.4 | supercontig_52:1082176-1082260 | + | 2,785 | 48.86 | UGAAGCUGCCAGCAUGAUCUA | miR167 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR166b-m1 | Carica papaya (Papaya) 0.4 | supercontig_52:1394698-1394778 | - | 32,969 | 578.35 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR160c-m1 | Carica papaya (Papaya) 0.4 | supercontig_53:453377-453457 | + | 4,721 | 82.82 | UGCCUGGCUCCCUGUAUGCCA | miR160 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR160f-m1 | Carica papaya (Papaya) 0.4 | supercontig_53:453377-453457 | + | 4,721 | 82.82 | UGCCUGGCUCCCUGUAUGCCA | miR160 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR8139d-m4 | Carica papaya (Papaya) 0.4 | supercontig_54:1440467-1440524 | - | 11 | 0.19 | UCCUGGCUGAGGACGGGUGUUGAA | miR8139 | nearMIRNA | miRBase21-BestBlastHit |
| cpa-MIR8139e-m4 | Carica papaya (Papaya) 0.4 | supercontig_54:1440467-1440524 | - | 11 | 0.19 | UCCUGGCUGAGGACGGGUGUUGAA | miR8139 | nearMIRNA | miRBase21-BestBlastHit |
| cpa-MIR166c-m1 | Carica papaya (Papaya) 0.4 | supercontig_58:558845-558957 | - | 4,310 | 75.61 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR8144-m1 | Carica papaya (Papaya) 0.4 | supercontig_596:16037-16134 | . | 429 | 7.53 | AACAGUAGAACGAGUUAGAAAGGA | miR8144 | siRNA24 | miRBase21-BestBlastHit |
| cpa-MIR8153-m1 | Carica papaya (Papaya) 0.4 | supercontig_6:1815699-1815793 | . | 5 | 0.09 | UGUUUUCGGGGAGCUGAAA | miR8153 | OtherRNA | miRBase21-BestBlastHit |
| cpa-MIR8146-m1 | Carica papaya (Papaya) 0.4 | supercontig_6:2864375-2864445 | . | 4 | 0.07 | UUAAAGGAAAUACUGUGAAUGAAU | | siRNA24 | miRBase21-BestBlastHit |
| cpa-MIR8154-m1 | Carica papaya (Papaya) 0.4 | supercontig_609:25560-25643 | - | 77 | 1.35 | CAGAGGAGGAGAUGAAGAGGGA | miR8154 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR8137-m1 | Carica papaya (Papaya) 0.4 | supercontig_67:293981-294045 | - | 12,900 | 226.30 | UUCGCCAGCCAUUCACAAAAU | miR8137 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR156c-m1 | Carica papaya (Papaya) 0.4 | supercontig_7:1524401-1524487 | + | 27 | 0.47 | UGACAGAAGAGAGUGAGCAC | miR156 | nearMIRNA | miRBase21-BestBlastHit |
| cpa-MIR171c-m1 | Carica papaya (Papaya) 0.4 | supercontig_70:1070976-1071067 | - | 31 | 0.54 | UGAUUGAGCCGUGCCAAUAUC | miR171 | nearMIRNA | miRBase21-BestBlastHit |
| cpa-MIR535-m1 | Carica papaya (Papaya) 0.4 | supercontig_8:330779-330859 | + | 8,286 | 145.36 | UGACAACGAGAGAGAGCACGC | miR535 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR8139b-m1 | Carica papaya (Papaya) 0.4 | supercontig_8:2704424-2704481 | + | 1 | 0.02 | AUCUGUGCCUUUGCUAGGACUACU | | siRNA24 | miRBase21-BestBlastHit |
| cpa-MIR8138-m1 | Carica papaya (Papaya) 0.4 | supercontig_80:269343-269444 | - | 55 | 0.97 | UAAAGAUGGUAACAAAGGAUAA | miR8138 | nearMIRNA | miRBase21-BestBlastHit |
| cpa-MIR172b-m1 | Carica papaya (Papaya) 0.4 | supercontig_81:530000-530106 | - | 243 | 4.26 | GGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR408-m1 | Carica papaya (Papaya) 0.4 | supercontig_812:11468-11551 | - | 17,293 | 303.36 | CUGCACUGCCUCUUCCCUGGC | miR408 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR8142-m1 | Carica papaya (Papaya) 0.4 | supercontig_838:807-902 | - | 93 | 1.63 | UGAGGUAAGUAGACAGUAAAGGUU | miR8142 | siRNA24 | miRBase21-BestBlastHit |
| cpa-MIR8149-m1 | Carica papaya (Papaya) 0.4 | supercontig_843:24523-24593 | . | 29 | 0.51 | CUGAAGACUCCGUAGUUAUAUG | miR8149 | siRNA24 | miRBase21-BestBlastHit |
| cpa-MIR171d-m1 | Carica papaya (Papaya) 0.4 | supercontig_87:527120-527195 | - | 934 | 16.39 | UUGAGCCGUGCCAAUAUCACG | miR171 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR164e-m1 | Carica papaya (Papaya) 0.4 | supercontig_9:1693831-1693898 | + | 140 | 2.46 | UGGAGAAGCAGGGCACGUGCA | miR164 | MIRNA | miRBase21-BestBlastHit |
| cpa-MIR164c-m1 | Carica papaya (Papaya) 0.4 | supercontig_9:1693833-1693900 | + | 140 | 2.46 | UGGAGAAGCAGGGCACGUGCA | miR164 | MIRNA | miRBase21-BestBlastHit |
Data from Lunardon et al. (2020)