Data from Lunardon et al. (2020)

Annotations viewer

Genome

Brassica rapa var. pekinensis (Chinese Cabbage) genome build 1 (bra-b1)

Version v1 of Brassica rapa var. pekinensis cv. Chiifu-401-42 from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
bra-MIR9555b-m1	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A01:12266528-12266740	.	75	0.81	AAGCUUUACGGUAAGAAACUUUCG	miR9555	siRNA24	miRBase21-BestBlastHit
bra-MIR5726-m1	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A01:19110791-19111132	.	2,016	21.65	UUCAUGAUCAAGGAAGGGGGCACG	miR5726	siRNA24	miRBase21-BestBlastHit
bra-MIR9563a-m1	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A01:26584662-26584828	.	63	0.68	UCUUAGCGGAAUAUAAGAACCCGU	miR9563	siRNA24	miRBase21-BestBlastHit
bra-MIR5721-m1	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A02:24350844-24351021	.	293	3.15	ACUGCAAAAUGGAGUGGAAAAUGA	miR5721	siRNA24	miRBase21-BestBlastHit
bra-MIR9564-m3	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A05:12727416-12727648	.	53	0.57	AAUCGCGGAAAAAGGAAACACAAC	miR9564	siRNA24	miRBase21-BestBlastHit
bra-MIR9564-m4	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A05:12727419-12727651	.	53	0.57	AAUCGCGGAAAAAGGAAACACAAC	miR9564	siRNA24	miRBase21-BestBlastHit
bra-MIR395b-m1	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A07:18553029-18553122	+	1	0.01	AAAUGAGUCCAGGAGUUCCCCCAA	miR395	siRNA24	miRBase21-BestBlastHit
bra-MIR9555a-m1	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A07:22497145-22497351	.	127	1.36	AUUGUGGGAUUCUAAGCUUUACGG	miR9555	siRNA24	miRBase21-BestBlastHit
bra-MIR9563b-m1	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A09:27174625-27174862	.	378	4.06	AGUGGGAUGUAAGAAUUCAUCUCU	miR9563	siRNA24	miRBase21-BestBlastHit
bra-MIR391-m1	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A09:35630790-35630893	.	16	0.17	AGAAGAUGGUGACGGUAUCUCUCC	miR391	siRNA24	miRBase21-BestBlastHit
bra-MIR391-m2	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A10:9280925-9281028	.	21	0.23	AGAAGAUGGUGACGGUAUCUCUCC	miR391	siRNA24	miRBase21-BestBlastHit