het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Brassica rapa var. pekinensis (Chinese Cabbage) genome build 1 (bra-b1)

Version v1 of Brassica rapa var. pekinensis cv. Chiifu-401-42 from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bra-MIR9566-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:4943796-4944013.840.90UUUGUCAACAAUGAAGUUUGGmiR9566siRNA21miRBase21-BestBlastHit
bra-MIR171a-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:22627704-22627788-4534.87UUGAGCCGUGCCAAUAUCACGmiR171siRNA21miRBase21-BestBlastHit
bra-MIR9562-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:18884191-18884339.3403.65UUGUUCACAAUUGCAUAGUCCmiR9562siRNA21miRBase21-BestBlastHit
bra-MIR5723-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:22317161-22317323.3533.79CUUCCACCUUCGUGAAAUGUGmiR5723siRNA21miRBase21-BestBlastHit
bra-MIR9568-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:14090126-14090275+2412.59UCAUCGUAAGAGAUCUGCAUUmiR9568siRNA21miRBase21-BestBlastHit
bra-MIR9567-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:17820435-17820572.941.01ACACAUAUAGUUUGCAGGGUGmiR9567siRNA21miRBase21-BestBlastHit
bra-MIR824-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:25606141-25606772+114,0451,224.83UAGACCAUUUGUGAGAAGGGAmiR824siRNA21miRBase21-BestBlastHit
bra-MIR5719-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:30596326-30596529+74,659801.83UGGUUUGGAUCUUGGAAGUCGUmiR5719siRNA21miRBase21-BestBlastHit
bra-MIR167d-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A05:15075971-15076094-4,29646.14UGAAGCUGCCAGCAUGAUCUAmiR167siRNA21miRBase21-BestBlastHit
bra-MIR5714-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A06:4276161-4276396-6567.05UUCUGGAUGCUGUAGAGUCUUmiR5714siRNA21miRBase21-BestBlastHit
bra-MIR5717-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A06:17544972-17545083.320.34AGUUUGGAUUGUUUGCCUUGGmiR5717siRNA21miRBase21-BestBlastHit
bra-MIR860-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A06:17834504-17834618+1,64817.70ACAUUGGACUACAUAUAUUACmiR860siRNA21miRBase21-BestBlastHit
bra-MIR9554-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A06:18344807-18344956-4234.54AGGAAUGAUACUUGGAUAUGAmiR9554siRNA21miRBase21-BestBlastHit
bra-MIR5654a-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A06:20493780-20493974.10,966117.77AUAAAUCCCAAGCAUCAUCCAmiR5654siRNA21miRBase21-BestBlastHit
bra-MIR5654b-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A06:20493780-20493974.10,966117.77AUAAAUCCCAAGCAUCAUCCAmiR5654siRNA21miRBase21-BestBlastHit
bra-MIR1885b-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A06:25283361-25283715+550,0945,907.96UGUGGACAAAGAAGGAAGACAsiRNA21miRBase21-BestBlastHit
bra-MIR1885a-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A06:25283379-25283698+321,1933,449.59AAUGUGACUAAGAAAGCCUCUACGmiR1885siRNA21miRBase21-BestBlastHit
bra-MIR5725-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A08:5347176-5347380.9169.84UGUGCUUAAGUAAUUUUUAGAmiR5725siRNA21miRBase21-BestBlastHit
bra-MIR5724-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A08:13776832-13777141.2,35925.34AACCGCCGGUUUGAUAAUAGCmiR5724siRNA21miRBase21-BestBlastHit
bra-MIR5720-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A09:639193-639482.5986.42AUUUUUAACUGUACGAUGAUUmiR5720siRNA21miRBase21-BestBlastHit
bra-MIR5713-m1Brassica rapa var. pekinensis (Chinese Cabbage) 1A09:34083461-34083906.2843.05AGACCAGUUGGACUACCGGAGmiR5713siRNA21miRBase21-BestBlastHit