Data from Lunardon et al. (2020)

Annotations viewer

Genome

Brassica rapa var. pekinensis (Chinese Cabbage) genome build 1 (bra-b1)

Version v1 of Brassica rapa var. pekinensis cv. Chiifu-401-42 from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
bra-MIR5716-m1	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A01:26734336-26734541	+	159	1.71	UUGGAUAAUUGAAGAUAUAAA	miR5716	nearMIRNA	miRBase21-BestBlastHit
bra-MIR9561-m1	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A03:13861321-13861443	-	157	1.69	AAUAUUAAUAUAAUUGGUGAGAGA	miR9561	nearMIRNA	miRBase21-BestBlastHit
bra-MIR171e-m1	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A03:21906195-21906313	+	7	0.08	UGAUUGAGCCGCGCCAAUAUC	miR171	nearMIRNA	miRBase21-BestBlastHit
bra-MIR9559-m1	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A04:344426-344534	+	482	5.18	UCAUUAGGUUUGGAUUUUGGU	miR9559	nearMIRNA	miRBase21-BestBlastHit
bra-MIR9560b-m1	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A06:18150518-18150653	+	85	0.91	ACAGGUGGUGGAACAAAUAUGAGU	miR9560	nearMIRNA	miRBase21-BestBlastHit
bra-MIR5715-m1	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A08:11784752-11784937	+	102	1.10	UAAGCCUCUGAAGAAAGACGUU	miR5715	nearMIRNA	miRBase21-BestBlastHit
bra-MIR171b-m1	Brassica rapa var. pekinensis (Chinese Cabbage) 1	A09:34777767-34777870	+	21	0.23	AGAUAUUAGUGCGGUUCAAUC	miR171	nearMIRNA	miRBase21-BestBlastHit