het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Brassica oleracea var. capitata (Cabbage) genome build 1.0 (bol-b1.0)

Version v1.0 of Brassica oleracea var. capitata cv. 02-12 from Phytozome


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Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bol-MIR9408-m1Brassica oleracea var. capitata (Cabbage) 1.0C01:13293228-13293358-1011.35UUUCAUCUUAGAGAAUGUUGUCmiR9408nearMIRNAmiRBase21-BestBlastHit
bol-MIR157a-m1Brassica oleracea var. capitata (Cabbage) 1.0C01:31679982-31680111+522,6857,000.31UUGACAGAAGAUAGAGAGCACmiR156nearMIRNAmiRBase21-BestBlastHit
bol-MIR172a-m1Brassica oleracea var. capitata (Cabbage) 1.0C02:1546883-1547000-1081.45AGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAmiRBase21-BestBlastHit
bol-MIR398a-m1Brassica oleracea var. capitata (Cabbage) 1.0C02:36449140-36449234+100.13AGGAGUGUCAUGAGAACACGGmiR398siRNA21miRBase21-BestBlastHit
bol-MIR9409-m1Brassica oleracea var. capitata (Cabbage) 1.0C03:15886597-15886696.2843.80UUUGUUCAUGACUGCAUUUUCUAmiR9409siRNA24miRBase21-BestBlastHit
bol-MIR9410-m1Brassica oleracea var. capitata (Cabbage) 1.0C03:24382500-24382595+3,76550.43ACUUAAUUAUAAGUCGUCUGGmiR9410siRNA21miRBase21-BestBlastHit
bol-MIR9411-m1Brassica oleracea var. capitata (Cabbage) 1.0C06:37155671-37155761-3,03040.58UCCAUGUAAGUCGUCUAGGUAmiR9411siRNA21miRBase21-BestBlastHit
bol-MIR824-m1Brassica oleracea var. capitata (Cabbage) 1.0C07:43482233-43482866+26,300352.24UAGACCAUUUGUGAGAAGGGAmiR824siRNA21miRBase21-BestBlastHit
bol-MIR171a-m1Brassica oleracea var. capitata (Cabbage) 1.0C08:38915975-38916061+1912.56AGAUAUUAGUGCGGUUCAAUCmiR171MIRNAmiRBase21-BestBlastHit
bol-MIR172b-m1Brassica oleracea var. capitata (Cabbage) 1.0C09:39300329-39300435+10,350138.62AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAmiRBase21-BestBlastHit