het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Brassica napus (Rapeseed) genome build 1 (bna-b1)

Version v1 of Brassica napus cv. Darmor-bzh from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bna-MIR166e-m1Brassica napus (Rapeseed) 1LK031787:731668-731797-1010.35GGAAUGUUGUCUGGCACGAGGmiR166siRNA21miRBase21-BestBlastHit
bna-MIR169n-m1Brassica napus (Rapeseed) 1LK031849:554788-554937-310.11CAGCCAAGGAUGACUUGCCGGmiR169siRNA21miRBase21-BestBlastHit
bna-MIR860-m1Brassica napus (Rapeseed) 1LK031854:1389267-1389381+2870.98UCAAUACAUUGGACUACAUAUmiR860siRNA21miRBase21-BestBlastHit
bna-MIR167d-m1Brassica napus (Rapeseed) 1LK031933:941227-941285+10.00AGAUCAUCCUGCGGCUUCAUUmiR167siRNA21miRBase21-BestBlastHit
bna-MIR164b-m1Brassica napus (Rapeseed) 1LK031962:889453-889563.30.01UUUUCGCACGUGUUCUACUAGmiR164siRNA21miRBase21-BestBlastHit
bna-MIR824-m1Brassica napus (Rapeseed) 1LK032008:637520-638151+17,00958.32CCUUCUCAUCGAUGGUCUAGAmiR824siRNA21miRBase21-BestBlastHit
bna-MIR169e-m1Brassica napus (Rapeseed) 1LK032221:385344-385622.180.06GGCAGUCUCCUUGGCUAUCmiR169siRNA21miRBase21-BestBlastHit
bna-MIR6035-m1Brassica napus (Rapeseed) 1LK032702:29241-29331+2630.90AUGGAGUAGAAAAUGCAGUCGmiR6035siRNA21miRBase21-BestBlastHit
bna-MIR167d-m2Brassica napus (Rapeseed) 1LK033013:1027-1085+420.14AGAUCAUCCUGCGGCUUCAUUmiR167siRNA21miRBase21-BestBlastHit
bna-MIR156g-m1Brassica napus (Rapeseed) 1LK033139:12729-12843+9483.25ACAGAAGAUAGAGAGCACAGAmiR156siRNA21miRBase21-BestBlastHit
bna-MIR396a-m1Brassica napus (Rapeseed) 1LK034046:3288-3320+2,4728.48GCUCAAGAAAGCUGUGGGAAAmiR396siRNA21miRBase21-BestBlastHit
bna-MIR171d-m1Brassica napus (Rapeseed) 1LK034487:1953-2048-3771.29UUGAGCCGUGCCAAUAUCACGmiR171siRNA21miRBase21-BestBlastHit
bna-MIR397b-m1Brassica napus (Rapeseed) 1LK036851:2650-2745-250.09UCAACGUUGGCUCAAUUAUGUmiR397siRNA21miRBase21-BestBlastHit