het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Brassica napus (Rapeseed) genome build 1 (bna-b1)

Version v1 of Brassica napus cv. Darmor-bzh from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bna-MIR394b-m1Brassica napus (Rapeseed) 1LK031787:3911181-3911292-120.04AGGUGGGCAUACUGCCAACAGmiR394nearMIRNAmiRBase21-BestBlastHit
bna-MIR166d-m1Brassica napus (Rapeseed) 1LK031790:2376057-2376174-3981.37CUCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAmiRBase21-BestBlastHit
bna-MIR172b-m1Brassica napus (Rapeseed) 1LK031791:3684036-3684130-350.12UUGGGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAmiRBase21-BestBlastHit
bna-MIR2111a-m1Brassica napus (Rapeseed) 1LK031800:747586-747736+170.06GUCCUCGGGAUGCGGAUUACCmiR2111nearMIRNAmiRBase21-BestBlastHit
bna-MIR156d-m2Brassica napus (Rapeseed) 1LK031804:67092-67201-2,8419.74GCUCACUGCUCUAUCUGUCAGGmiR156nearMIRNAmiRBase21-BestBlastHit
bna-MIR160b-m1Brassica napus (Rapeseed) 1LK031812:1062432-1062519-1850.63GCGUACAAGGAGUCAAGCAUGmiR160nearMIRNAmiRBase21-BestBlastHit
bna-MIR394a-m1Brassica napus (Rapeseed) 1LK031850:1546655-1546769-610.21UUGGCAUUCUGUCCACCUCCmiR394nearMIRNAmiRBase21-BestBlastHit
bna-MIR172b-m2Brassica napus (Rapeseed) 1LK031856:593528-593622+1,3014.46UUGGGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAmiRBase21-BestBlastHit
bna-MIR167c-m1Brassica napus (Rapeseed) 1LK031874:295933-296064+4,19714.39GAUCAUGUUCGUAGUUUCACCmiR167nearMIRNAmiRBase21-BestBlastHit
bna-MIR156c-m1Brassica napus (Rapeseed) 1LK031889:1147756-1147910-540.19GCUCUCUAUACUUCUGUCAAUAmiR157nearMIRNAmiRBase21-BestBlastHit
bna-MIR164c-m1Brassica napus (Rapeseed) 1LK031916:26442-26532+250.09UGGAGUAGUAGAACACGUGCAmiR164nearMIRNAmiRBase21-BestBlastHit
bna-MIR167b-m1Brassica napus (Rapeseed) 1LK032005:637556-637679+290.10UGAUUAGAUCAUGUUCGCAGUmiR167nearMIRNAmiRBase21-BestBlastHit
bna-MIR395b-m1Brassica napus (Rapeseed) 1LK032012:840812-840900+60.02CUGAAGUGUUUGGGGGAACUCmiR395nearMIRNAmiRBase21-BestBlastHit
bna-MIR169l-m1Brassica napus (Rapeseed) 1LK032037:499134-499332-40.01UGACAUACUUUUUUCAUCCAUGmiR169nearMIRNAmiRBase21-BestBlastHit
bna-MIR169j-m1Brassica napus (Rapeseed) 1LK032037:499150-499316-40.01UGACAUACUUUUUUCAUCCAUGmiR169nearMIRNAmiRBase21-BestBlastHit
bna-MIR164c-m2Brassica napus (Rapeseed) 1LK032100:137723-137813-270.09UGGAGUAGUAGAACACGUGCAmiR164nearMIRNAmiRBase21-BestBlastHit
bna-MIR166d-m2Brassica napus (Rapeseed) 1LK032122:245574-245691+4611.58CUCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAmiRBase21-BestBlastHit
bna-MIR166c-m1Brassica napus (Rapeseed) 1LK032130:220065-220191-1800.62UGGAUGAUGCUUGGCUCGAGAmiR166nearMIRNAmiRBase21-BestBlastHit
bna-MIR166b-m1Brassica napus (Rapeseed) 1LK032130:220073-220184-1800.62UGGAUGAUGCUUGGCUCGAGAmiR166nearMIRNAmiRBase21-BestBlastHit
bna-MIR397a-m1Brassica napus (Rapeseed) 1LK032362:246366-246461+130.05AUCAACGUUGGCUCAAUUAUGmiR397nearMIRNAmiRBase21-BestBlastHit
bna-MIR156e-m2Brassica napus (Rapeseed) 1LK032376:280910-281028-6,87823.58UGACAGAAGAGAGUGAGCACUmiR156nearMIRNAmiRBase21-BestBlastHit
bna-MIR166f-m2Brassica napus (Rapeseed) 1LK032449:295515-295643-4571.57GGAAUGUUGUCUGGAUCGAGGmiR165nearMIRNAmiRBase21-BestBlastHit
bna-MIR390c-m1Brassica napus (Rapeseed) 1LK033571:36282-36409+3871.33CGCUAUCCAUCCUGAGUUCCmiR390nearMIRNAmiRBase21-BestBlastHit
bna-MIR390a-m1Brassica napus (Rapeseed) 1LK033832:14168-14311-360.12CGCUAUCCAUCCUGAGUUCUmiR390nearMIRNAmiRBase21-BestBlastHit
bna-MIR167c-m2Brassica napus (Rapeseed) 1LK033953:35514-35645+4,15814.26GAUCAUGUUCGUAGUUUCACCmiR167nearMIRNAmiRBase21-BestBlastHit
bna-MIR399c-m1Brassica napus (Rapeseed) 1LK034011:14539-14641-1410.48UGCCAAAGGAGAUUUGUCCGGmiR399nearMIRNAmiRBase21-BestBlastHit
bna-MIR172a-m1Brassica napus (Rapeseed) 1LK034037:16500-16609+870.30GCAGCACCAUCAAGAUUCACAmiR172nearMIRNAmiRBase21-BestBlastHit
bna-MIR169l-m2Brassica napus (Rapeseed) 1LK034260:8289-8487+20.01UGACAUACUUUUUUCAUCCAUGmiR169nearMIRNAmiRBase21-BestBlastHit
bna-MIR169j-m2Brassica napus (Rapeseed) 1LK034260:8305-8471+20.01UGACAUACUUUUUUCAUCCAUGmiR169nearMIRNAmiRBase21-BestBlastHit
bna-MIR395c-m1Brassica napus (Rapeseed) 1LK037681:2518-2615+170.06CUGAAGUGUUUGGGGGAACUCmiR395nearMIRNAmiRBase21-BestBlastHit
bna-MIR6033-m1Brassica napus (Rapeseed) 1LK043614:2659-2768+230.08UGAACCAGAUAGAGUGGGACUmiR6033nearMIRNAmiRBase21-BestBlastHit
bna-MIR390a-m2Brassica napus (Rapeseed) 1LK047231:653-796+390.13CGCUAUCCAUCCUGAGUUCUmiR390nearMIRNAmiRBase21-BestBlastHit
bna-MIR2111d-m1Brassica napus (Rapeseed) 1LK049374:1553-1664-870.30AUCCUCGGGAUACGGAUUACCmiR2111nearMIRNAmiRBase21-BestBlastHit