het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Brassica napus (Rapeseed) genome build 1 (bna-b1)

Version v1 of Brassica napus cv. Darmor-bzh from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bna-MIR393-m1Brassica napus (Rapeseed) 1LK031787:1380978-1381107+5551.90AUCAUGCGAUCUCUUCGGAUUmiR393MIRNAmiRBase21-BestBlastHit
bna-MIR156d-m1Brassica napus (Rapeseed) 1LK031789:1317584-1317693-35,690122.37UGACAGAAGAGAGUGAGCACmiR156MIRNAmiRBase21-BestBlastHit
bna-MIR162a-m1Brassica napus (Rapeseed) 1LK031790:2511050-2511163+1,2664.34UCGAUAAACCUCUGCAUCCAGmiR162MIRNAmiRBase21-BestBlastHit
bna-MIR403-m1Brassica napus (Rapeseed) 1LK031819:1870985-1871095+36,725125.92UUAGAUUCACGCACAAACUCGmiR403MIRNAmiRBase21-BestBlastHit
bna-MIR164a-m1Brassica napus (Rapeseed) 1LK031819:1972965-1973050+8602.95UGGAGAAGCAGGGCACGUGCAmiR164MIRNAmiRBase21-BestBlastHit
bna-MIR2111b-m1Brassica napus (Rapeseed) 1LK031823:276430-276546+3561.22AUCCUCGGGAUACAGAUUACCmiR2111MIRNAmiRBase21-BestBlastHit
bna-MIR160c-m1Brassica napus (Rapeseed) 1LK031863:264834-264948-1,0393.56CGUACAGAGUAGUCAAGCAUGAmiR160MIRNAmiRBase21-BestBlastHit
bna-MIR171f-m1Brassica napus (Rapeseed) 1LK031863:1350164-1350282-7772.66UAUUGGCCUGGUUCACUCAGAmiR171MIRNAmiRBase21-BestBlastHit
bna-MIR171b-m1Brassica napus (Rapeseed) 1LK031902:350062-350162-820.28AGAUAUUAGUGCGGUUCAAUCmiR171MIRNAmiRBase21-BestBlastHit
bna-MIR399a-m1Brassica napus (Rapeseed) 1LK031914:145550-145651+1,1373.90UGCCAAAGGAGAUUUGCCCGGmiR399MIRNAmiRBase21-BestBlastHit
bna-MIR161-m1Brassica napus (Rapeseed) 1LK031951:32890-33024+1,8786.44UCAAUGCACUGAAAGUGACUAmiR161MIRNAmiRBase21-BestBlastHit
bna-MIR6030-m1Brassica napus (Rapeseed) 1LK031983:342965-343077-12,49942.86UCCACCCAUACCAUACAGACCCmiR6030MIRNAmiRBase21-BestBlastHit
bna-MIR6029-m1Brassica napus (Rapeseed) 1LK031986:564037-564152+7,34625.19UGGGGUUGUGAUUUCAGGCUUmiR6029MIRNAmiRBase21-BestBlastHit
bna-MIR159-m1Brassica napus (Rapeseed) 1LK032009:234605-234787+76,394261.94UUUGGAUUGAAGGGAGCUCUAmiR159MIRNAmiRBase21-BestBlastHit
bna-MIR166f-m1Brassica napus (Rapeseed) 1LK032052:389173-389301+1,3924.77GGAAUGUUGUCUGGAUCGAGGmiR165MIRNAmiRBase21-BestBlastHit
bna-MIR390b-m1Brassica napus (Rapeseed) 1LK032085:187349-187453-12,80843.92AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAmiRBase21-BestBlastHit
bna-MIR171c-m1Brassica napus (Rapeseed) 1LK032115:305381-305468-1040.36UUGAGCCGUGCCAAUAUCACGmiR171MIRNAmiRBase21-BestBlastHit
bna-MIR2111c-m1Brassica napus (Rapeseed) 1LK032128:438280-438416+660.23UAAUCUGCAUCCUGGGGUUUAmiR2111MIRNAmiRBase21-BestBlastHit
bna-MIR156e-m1Brassica napus (Rapeseed) 1LK032142:185341-185459+6,81023.35UGACAGAAGAGAGUGAGCACUmiR156MIRNAmiRBase21-BestBlastHit
bna-MIR169a-m1Brassica napus (Rapeseed) 1LK032145:310626-310758-3,84413.18CAGCCAAGGAUGACUUGCCGAmiR169MIRNAmiRBase21-BestBlastHit
bna-MIR169m-m1Brassica napus (Rapeseed) 1LK032179:86457-86619-3151.08UGAGCCAAAGAUGACUUGCCGmiR169MIRNAmiRBase21-BestBlastHit
bna-MIR6032-m1Brassica napus (Rapeseed) 1LK032226:35505-35603-3,36911.55UGGAGCAUCAACAGAUCUCGGmiR6032MIRNAmiRBase21-BestBlastHit
bna-MIR171g-m1Brassica napus (Rapeseed) 1LK032229:194914-194993+3,22811.07UAUUGGCCUGGUUCACUCAGAmiR171MIRNAmiRBase21-BestBlastHit
bna-MIR160b-m2Brassica napus (Rapeseed) 1LK032315:241255-241342-6812.34UGCCUGGCUCCCUGUAUGCCAmiR160MIRNAmiRBase21-BestBlastHit
bna-MIR167a-m1Brassica napus (Rapeseed) 1LK032331:70890-71021-7,99127.40UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAmiRBase21-BestBlastHit
bna-MIR168a-m1Brassica napus (Rapeseed) 1LK032447:164710-164842-233,625801.04UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAmiRBase21-BestBlastHit
bna-MIR172d-m1Brassica napus (Rapeseed) 1LK032466:208518-208630+7392.53GCAUCAUCAUCAAGAUUCAGAmiR172MIRNAmiRBase21-BestBlastHit
bna-MIR166a-m1Brassica napus (Rapeseed) 1LK032749:143759-143894-1,5865.44GGAAUGUUGUUUGGCUCGAAGmiR166MIRNAmiRBase21-BestBlastHit
bna-MIR6028-m1Brassica napus (Rapeseed) 1LK032952:91950-92080-17,13158.74UGAAUGUCUUUCUCUUCAUCmiR6028MIRNAmiRBase21-BestBlastHit
bna-MIR156b-m1Brassica napus (Rapeseed) 1LK033040:69353-69560-111,344381.77UUGACAGAAGAUAGAGAGCACmiR156MIRNAmiRBase21-BestBlastHit
bna-MIR172c-m1Brassica napus (Rapeseed) 1LK033204:34169-34306+2,7479.42GGAAUCUUGAUGAUGCUGCAUmiR172MIRNAmiRBase21-BestBlastHit
bna-MIR160d-m1Brassica napus (Rapeseed) 1LK033350:45225-45313-6712.30CGUACAGAGUAGUCAAGCAUGAmiR160MIRNAmiRBase21-BestBlastHit
bna-MIR156f-m1Brassica napus (Rapeseed) 1LK033474:52578-52687+85,492293.13UGACAGAAGAGAGUGAGCACmiR156MIRNAmiRBase21-BestBlastHit
bna-MIR6034-m1Brassica napus (Rapeseed) 1LK034558:1223-1348-2530.87UCUGAUGUAUAUAGCUUUGGGmiR6034MIRNAmiRBase21-BestBlastHit
bna-MIR399b-m1Brassica napus (Rapeseed) 1LK034564:6036-6142+860.30UGCCAAAGGAGAUUUGCCCGGmiR399MIRNAmiRBase21-BestBlastHit
bna-MIR1140-m1Brassica napus (Rapeseed) 1LK036141:9416-9565-19,56067.07UCCGAUUGGCUUUAGGCUGUUGmiR1140MIRNAmiRBase21-BestBlastHit
bna-MIR167b-m2Brassica napus (Rapeseed) 1LK036283:5705-5828-380.13UGAUUAGAUCAUGUUCGCAGUmiR167MIRNAmiRBase21-BestBlastHit
bna-MIR160a-m1Brassica napus (Rapeseed) 1LK047858:493-611+1,6555.68GCGUAUGAGGAGCCAUGCAUAmiR160MIRNAmiRBase21-BestBlastHit
bna-MIR160a-m2Brassica napus (Rapeseed) 1LK049481:491-609+2,4498.40GCGUAUGAGGAGCCAUGCAUAmiR160MIRNAmiRBase21-BestBlastHit
bna-MIR168b-m1Brassica napus (Rapeseed) 1LK049793:1500-1629-15,85154.35UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAmiRBase21-BestBlastHit