het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Brassica napus (Rapeseed) genome build 1 (bna-b1)

Version v1 of Brassica napus cv. Darmor-bzh from Ensembl Plants


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Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bna-MIR166e-m1Brassica napus (Rapeseed) 1LK031787:731668-731797-1010.35GGAAUGUUGUCUGGCACGAGGmiR166siRNA21miRBase21-BestBlastHit
bna-MIR393-m1Brassica napus (Rapeseed) 1LK031787:1380978-1381107+5551.90AUCAUGCGAUCUCUUCGGAUUmiR393MIRNAmiRBase21-BestBlastHit
bna-MIR394b-m1Brassica napus (Rapeseed) 1LK031787:3911181-3911292-120.04AGGUGGGCAUACUGCCAACAGmiR394nearMIRNAmiRBase21-BestBlastHit
bna-MIR156d-m1Brassica napus (Rapeseed) 1LK031789:1317584-1317693-35,690122.37UGACAGAAGAGAGUGAGCACmiR156MIRNAmiRBase21-BestBlastHit
bna-MIR166d-m1Brassica napus (Rapeseed) 1LK031790:2376057-2376174-3981.37CUCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAmiRBase21-BestBlastHit
bna-MIR162a-m1Brassica napus (Rapeseed) 1LK031790:2511050-2511163+1,2664.34UCGAUAAACCUCUGCAUCCAGmiR162MIRNAmiRBase21-BestBlastHit
bna-MIR172b-m1Brassica napus (Rapeseed) 1LK031791:3684036-3684130-350.12UUGGGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAmiRBase21-BestBlastHit
bna-MIR2111a-m1Brassica napus (Rapeseed) 1LK031800:747586-747736+170.06GUCCUCGGGAUGCGGAUUACCmiR2111nearMIRNAmiRBase21-BestBlastHit
bna-MIR156d-m2Brassica napus (Rapeseed) 1LK031804:67092-67201-2,8419.74GCUCACUGCUCUAUCUGUCAGGmiR156nearMIRNAmiRBase21-BestBlastHit
bna-MIR169b-m1Brassica napus (Rapeseed) 1LK031805:44896-45084-40.01GGCAAGUUUUCCUUGGCmiR169OtherRNAmiRBase21-BestBlastHit
bna-MIR160b-m1Brassica napus (Rapeseed) 1LK031812:1062432-1062519-1850.63GCGUACAAGGAGUCAAGCAUGmiR160nearMIRNAmiRBase21-BestBlastHit
bna-MIR403-m1Brassica napus (Rapeseed) 1LK031819:1870985-1871095+36,725125.92UUAGAUUCACGCACAAACUCGmiR403MIRNAmiRBase21-BestBlastHit
bna-MIR164a-m1Brassica napus (Rapeseed) 1LK031819:1972965-1973050+8602.95UGGAGAAGCAGGGCACGUGCAmiR164MIRNAmiRBase21-BestBlastHit
bna-MIR2111b-m1Brassica napus (Rapeseed) 1LK031823:276430-276546+3561.22AUCCUCGGGAUACAGAUUACCmiR2111MIRNAmiRBase21-BestBlastHit
bna-MIR169h-m1Brassica napus (Rapeseed) 1LK031826:1513974-1514149-80.03GGCAGUCUCCUCGGCUAUUmiR169OtherRNAmiRBase21-BestBlastHit
bna-MIR164d-m1Brassica napus (Rapeseed) 1LK031845:13037-1314600.00NotExpressedmiRBase21-BestBlastHit
bna-MIR169n-m1Brassica napus (Rapeseed) 1LK031849:554788-554937-310.11CAGCCAAGGAUGACUUGCCGGmiR169siRNA21miRBase21-BestBlastHit
bna-MIR394a-m1Brassica napus (Rapeseed) 1LK031850:1546655-1546769-610.21UUGGCAUUCUGUCCACCUCCmiR394nearMIRNAmiRBase21-BestBlastHit
bna-MIR860-m1Brassica napus (Rapeseed) 1LK031854:1389267-1389381+2870.98UCAAUACAUUGGACUACAUAUmiR860siRNA21miRBase21-BestBlastHit
bna-MIR172b-m2Brassica napus (Rapeseed) 1LK031856:593528-593622+1,3014.46UUGGGAAUCUUGAUGAUGCUGCAUmiR172nearMIRNAmiRBase21-BestBlastHit
bna-MIR160c-m1Brassica napus (Rapeseed) 1LK031863:264834-264948-1,0393.56CGUACAGAGUAGUCAAGCAUGAmiR160MIRNAmiRBase21-BestBlastHit
bna-MIR171f-m1Brassica napus (Rapeseed) 1LK031863:1350164-1350282-7772.66UAUUGGCCUGGUUCACUCAGAmiR171MIRNAmiRBase21-BestBlastHit
bna-MIR6031-m1Brassica napus (Rapeseed) 1LK031864:325554-325624.570.20GCAGCUUUUGCGAUUGGUAGCGGUsiRNA24miRBase21-BestBlastHit
bna-MIR6031-m2Brassica napus (Rapeseed) 1LK031871:1270517-1270587+330.11UUUUGAAUUUAAGAGGUUCGGAGCsiRNA24miRBase21-BestBlastHit
bna-MIR167c-m1Brassica napus (Rapeseed) 1LK031874:295933-296064+4,19714.39GAUCAUGUUCGUAGUUUCACCmiR167nearMIRNAmiRBase21-BestBlastHit
bna-MIR156c-m1Brassica napus (Rapeseed) 1LK031889:1147756-1147910-540.19GCUCUCUAUACUUCUGUCAAUAmiR157nearMIRNAmiRBase21-BestBlastHit
bna-MIR6031-m3Brassica napus (Rapeseed) 1LK031898:413404-413474.50.02AUACAAACCGCUAUAAAUCGCUUCmiR6031siRNA24miRBase21-BestBlastHit
bna-MIR171b-m1Brassica napus (Rapeseed) 1LK031902:350062-350162-820.28AGAUAUUAGUGCGGUUCAAUCmiR171MIRNAmiRBase21-BestBlastHit
bna-MIR399a-m1Brassica napus (Rapeseed) 1LK031914:145550-145651+1,1373.90UGCCAAAGGAGAUUUGCCCGGmiR399MIRNAmiRBase21-BestBlastHit
bna-MIR164c-m1Brassica napus (Rapeseed) 1LK031916:26442-26532+250.09UGGAGUAGUAGAACACGUGCAmiR164nearMIRNAmiRBase21-BestBlastHit
bna-MIR167d-m1Brassica napus (Rapeseed) 1LK031933:941227-941285+10.00AGAUCAUCCUGCGGCUUCAUUmiR167siRNA21miRBase21-BestBlastHit
bna-MIR161-m1Brassica napus (Rapeseed) 1LK031951:32890-33024+1,8786.44UCAAUGCACUGAAAGUGACUAmiR161MIRNAmiRBase21-BestBlastHit
bna-MIR164b-m1Brassica napus (Rapeseed) 1LK031962:889453-889563.30.01UUUUCGCACGUGUUCUACUAGmiR164siRNA21miRBase21-BestBlastHit
bna-MIR6030-m1Brassica napus (Rapeseed) 1LK031983:342965-343077-12,49942.86UCCACCCAUACCAUACAGACCCmiR6030MIRNAmiRBase21-BestBlastHit
bna-MIR6029-m1Brassica napus (Rapeseed) 1LK031986:564037-564152+7,34625.19UGGGGUUGUGAUUUCAGGCUUmiR6029MIRNAmiRBase21-BestBlastHit
bna-MIR167b-m1Brassica napus (Rapeseed) 1LK032005:637556-637679+290.10UGAUUAGAUCAUGUUCGCAGUmiR167nearMIRNAmiRBase21-BestBlastHit
bna-MIR824-m1Brassica napus (Rapeseed) 1LK032008:637520-638151+17,00958.32CCUUCUCAUCGAUGGUCUAGAmiR824siRNA21miRBase21-BestBlastHit
bna-MIR159-m1Brassica napus (Rapeseed) 1LK032009:234605-234787+76,394261.94UUUGGAUUGAAGGGAGCUCUAmiR159MIRNAmiRBase21-BestBlastHit
bna-MIR395f-m1Brassica napus (Rapeseed) 1LK032012:829428-829535-10.00UGGGGGGACUCUAGGUGGCAUAUmiR395siRNA23miRBase21-BestBlastHit
bna-MIR395b-m1Brassica napus (Rapeseed) 1LK032012:840812-840900+60.02CUGAAGUGUUUGGGGGAACUCmiR395nearMIRNAmiRBase21-BestBlastHit
bna-MIR169f-m1Brassica napus (Rapeseed) 1LK032037:498774-49897400.00NotExpressedmiRBase21-BestBlastHit
bna-MIR169l-m1Brassica napus (Rapeseed) 1LK032037:499134-499332-40.01UGACAUACUUUUUUCAUCCAUGmiR169nearMIRNAmiRBase21-BestBlastHit
bna-MIR169j-m1Brassica napus (Rapeseed) 1LK032037:499150-499316-40.01UGACAUACUUUUUUCAUCCAUGmiR169nearMIRNAmiRBase21-BestBlastHit
bna-MIR166f-m1Brassica napus (Rapeseed) 1LK032052:389173-389301+1,3924.77GGAAUGUUGUCUGGAUCGAGGmiR165MIRNAmiRBase21-BestBlastHit
bna-MIR6031-m4Brassica napus (Rapeseed) 1LK032078:86858-86928+270.09UUUUGAAUUUAAGAGGUUCGGAGCsiRNA24miRBase21-BestBlastHit
bna-MIR390b-m1Brassica napus (Rapeseed) 1LK032085:187349-187453-12,80843.92AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAmiRBase21-BestBlastHit
bna-MIR164c-m2Brassica napus (Rapeseed) 1LK032100:137723-137813-270.09UGGAGUAGUAGAACACGUGCAmiR164nearMIRNAmiRBase21-BestBlastHit
bna-MIR171c-m1Brassica napus (Rapeseed) 1LK032115:305381-305468-1040.36UUGAGCCGUGCCAAUAUCACGmiR171MIRNAmiRBase21-BestBlastHit
bna-MIR166d-m2Brassica napus (Rapeseed) 1LK032122:245574-245691+4611.58CUCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAmiRBase21-BestBlastHit
bna-MIR2111c-m1Brassica napus (Rapeseed) 1LK032128:438280-438416+660.23UAAUCUGCAUCCUGGGGUUUAmiR2111MIRNAmiRBase21-BestBlastHit
bna-MIR166c-m1Brassica napus (Rapeseed) 1LK032130:220065-220191-1800.62UGGAUGAUGCUUGGCUCGAGAmiR166nearMIRNAmiRBase21-BestBlastHit
bna-MIR166b-m1Brassica napus (Rapeseed) 1LK032130:220073-220184-1800.62UGGAUGAUGCUUGGCUCGAGAmiR166nearMIRNAmiRBase21-BestBlastHit
bna-MIR156e-m1Brassica napus (Rapeseed) 1LK032142:185341-185459+6,81023.35UGACAGAAGAGAGUGAGCACUmiR156MIRNAmiRBase21-BestBlastHit
bna-MIR169a-m1Brassica napus (Rapeseed) 1LK032145:310626-310758-3,84413.18CAGCCAAGGAUGACUUGCCGAmiR169MIRNAmiRBase21-BestBlastHit
bna-MIR6036-m1Brassica napus (Rapeseed) 1LK032165:93009-93163.200.07AGGCUAACUGAGACUAGUGAGUUAsiRNA24miRBase21-BestBlastHit
bna-MIR171e-m1Brassica napus (Rapeseed) 1LK032165:127791-127882-740.25UUGAGCCGUGCCAAUAUCACGAmiR171siRNA22miRBase21-BestBlastHit
bna-MIR169m-m1Brassica napus (Rapeseed) 1LK032179:86457-86619-3151.08UGAGCCAAAGAUGACUUGCCGmiR169MIRNAmiRBase21-BestBlastHit
bna-MIR169g-m1Brassica napus (Rapeseed) 1LK032193:54652-54819+2961.02GGCAGUCUCCUUGGCUAUUmiR169OtherRNAmiRBase21-BestBlastHit
bna-MIR169i-m1Brassica napus (Rapeseed) 1LK032221:385207-385380+130.05GGCAGUCUCCUUGGCUAUCmiR169OtherRNAmiRBase21-BestBlastHit
bna-MIR169e-m1Brassica napus (Rapeseed) 1LK032221:385344-385622.180.06GGCAGUCUCCUUGGCUAUCmiR169siRNA21miRBase21-BestBlastHit
bna-MIR6032-m1Brassica napus (Rapeseed) 1LK032226:35505-35603-3,36911.55UGGAGCAUCAACAGAUCUCGGmiR6032MIRNAmiRBase21-BestBlastHit
bna-MIR171g-m1Brassica napus (Rapeseed) 1LK032229:194914-194993+3,22811.07UAUUGGCCUGGUUCACUCAGAmiR171MIRNAmiRBase21-BestBlastHit
bna-MIR171c-m2Brassica napus (Rapeseed) 1LK032269:8356-8443-10.00AAAUAGUCGUACUCUUAGCUAUUAGAGAUCGGUUUUGUUCGAmiR171OtherRNAmiRBase21-BestBlastHit
bna-MIR160b-m2Brassica napus (Rapeseed) 1LK032315:241255-241342-6812.34UGCCUGGCUCCCUGUAUGCCAmiR160MIRNAmiRBase21-BestBlastHit
bna-MIR169c-m1Brassica napus (Rapeseed) 1LK032330:382729-38290900.00NotExpressedmiRBase21-BestBlastHit
bna-MIR167a-m1Brassica napus (Rapeseed) 1LK032331:70890-71021-7,99127.40UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAmiRBase21-BestBlastHit
bna-MIR171a-m1Brassica napus (Rapeseed) 1LK032342:55535-5563800.00NotExpressedmiRBase21-BestBlastHit
bna-MIR397a-m1Brassica napus (Rapeseed) 1LK032362:246366-246461+130.05AUCAACGUUGGCUCAAUUAUGmiR397nearMIRNAmiRBase21-BestBlastHit
bna-MIR156e-m2Brassica napus (Rapeseed) 1LK032376:280910-281028-6,87823.58UGACAGAAGAGAGUGAGCACUmiR156nearMIRNAmiRBase21-BestBlastHit
bna-MIR395e-m1Brassica napus (Rapeseed) 1LK032432:55962-56057+150.05GUUCCCUGAAACGCUUCAUUGmiR395OtherRNAmiRBase21-BestBlastHit
bna-MIR168a-m1Brassica napus (Rapeseed) 1LK032447:164710-164842-233,625801.04UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAmiRBase21-BestBlastHit
bna-MIR166f-m2Brassica napus (Rapeseed) 1LK032449:295515-295643-4571.57GGAAUGUUGUCUGGAUCGAGGmiR165nearMIRNAmiRBase21-BestBlastHit
bna-MIR172d-m1Brassica napus (Rapeseed) 1LK032466:208518-208630+7392.53GCAUCAUCAUCAAGAUUCAGAmiR172MIRNAmiRBase21-BestBlastHit
bna-MIR6035-m1Brassica napus (Rapeseed) 1LK032702:29241-29331+2630.90AUGGAGUAGAAAAUGCAGUCGmiR6035siRNA21miRBase21-BestBlastHit
bna-MIR166a-m1Brassica napus (Rapeseed) 1LK032749:143759-143894-1,5865.44GGAAUGUUGUUUGGCUCGAAGmiR166MIRNAmiRBase21-BestBlastHit
bna-MIR171b-m2Brassica napus (Rapeseed) 1LK032859:91818-9191800.00NotExpressedmiRBase21-BestBlastHit
bna-MIR169k-m1Brassica napus (Rapeseed) 1LK032923:15241-15395+570.20GGCAGUCUCCUCGGCUAUUmiR169OtherRNAmiRBase21-BestBlastHit
bna-MIR6028-m1Brassica napus (Rapeseed) 1LK032952:91950-92080-17,13158.74UGAAUGUCUUUCUCUUCAUCmiR6028MIRNAmiRBase21-BestBlastHit
bna-MIR167d-m2Brassica napus (Rapeseed) 1LK033013:1027-1085+420.14AGAUCAUCCUGCGGCUUCAUUmiR167siRNA21miRBase21-BestBlastHit
bna-MIR156b-m1Brassica napus (Rapeseed) 1LK033040:69353-69560-111,344381.77UUGACAGAAGAUAGAGAGCACmiR156MIRNAmiRBase21-BestBlastHit
bna-MIR395a-m1Brassica napus (Rapeseed) 1LK033127:50833-50915+20.01GAAACCGUAGAAUGGGUCCAGGAGsiRNA20miRBase21-BestBlastHit
bna-MIR395d-m1Brassica napus (Rapeseed) 1LK033127:51934-5205000.00NotExpressedmiRBase21-BestBlastHit
bna-MIR156g-m1Brassica napus (Rapeseed) 1LK033139:12729-12843+9483.25ACAGAAGAUAGAGAGCACAGAmiR156siRNA21miRBase21-BestBlastHit
bna-MIR169d-m1Brassica napus (Rapeseed) 1LK033151:26126-26345+40.01GGCAGUCUCCUUGGCUAUCmiR169OtherRNAmiRBase21-BestBlastHit
bna-MIR172c-m1Brassica napus (Rapeseed) 1LK033204:34169-34306+2,7479.42GGAAUCUUGAUGAUGCUGCAUmiR172MIRNAmiRBase21-BestBlastHit
bna-MIR156a-m1Brassica napus (Rapeseed) 1LK033206:72514-72595.60.02CAUAGCAACUGACAGAAGAGAGUGAGCACmiR156siRNA24miRBase21-BestBlastHit
bna-MIR160d-m1Brassica napus (Rapeseed) 1LK033350:45225-45313-6712.30CGUACAGAGUAGUCAAGCAUGAmiR160MIRNAmiRBase21-BestBlastHit
bna-MIR156f-m1Brassica napus (Rapeseed) 1LK033474:52578-52687+85,492293.13UGACAGAAGAGAGUGAGCACmiR156MIRNAmiRBase21-BestBlastHit
bna-MIR390c-m1Brassica napus (Rapeseed) 1LK033571:36282-36409+3871.33CGCUAUCCAUCCUGAGUUCCmiR390nearMIRNAmiRBase21-BestBlastHit
bna-MIR390a-m1Brassica napus (Rapeseed) 1LK033832:14168-14311-360.12CGCUAUCCAUCCUGAGUUCUmiR390nearMIRNAmiRBase21-BestBlastHit
bna-MIR167c-m2Brassica napus (Rapeseed) 1LK033953:35514-35645+4,15814.26GAUCAUGUUCGUAGUUUCACCmiR167nearMIRNAmiRBase21-BestBlastHit
bna-MIR399c-m1Brassica napus (Rapeseed) 1LK034011:14539-14641-1410.48UGCCAAAGGAGAUUUGUCCGGmiR399nearMIRNAmiRBase21-BestBlastHit
bna-MIR172a-m1Brassica napus (Rapeseed) 1LK034037:16500-16609+870.30GCAGCACCAUCAAGAUUCACAmiR172nearMIRNAmiRBase21-BestBlastHit
bna-MIR396a-m1Brassica napus (Rapeseed) 1LK034046:3288-3320+2,4728.48GCUCAAGAAAGCUGUGGGAAAmiR396siRNA21miRBase21-BestBlastHit
bna-MIR169l-m2Brassica napus (Rapeseed) 1LK034260:8289-8487+20.01UGACAUACUUUUUUCAUCCAUGmiR169nearMIRNAmiRBase21-BestBlastHit
bna-MIR169j-m2Brassica napus (Rapeseed) 1LK034260:8305-8471+20.01UGACAUACUUUUUUCAUCCAUGmiR169nearMIRNAmiRBase21-BestBlastHit
bna-MIR171d-m1Brassica napus (Rapeseed) 1LK034487:1953-2048-3771.29UUGAGCCGUGCCAAUAUCACGmiR171siRNA21miRBase21-BestBlastHit
bna-MIR6034-m1Brassica napus (Rapeseed) 1LK034558:1223-1348-2530.87UCUGAUGUAUAUAGCUUUGGGmiR6034MIRNAmiRBase21-BestBlastHit
bna-MIR399b-m1Brassica napus (Rapeseed) 1LK034564:6036-6142+860.30UGCCAAAGGAGAUUUGCCCGGmiR399MIRNAmiRBase21-BestBlastHit
bna-MIR1140-m1Brassica napus (Rapeseed) 1LK036141:9416-9565-19,56067.07UCCGAUUGGCUUUAGGCUGUUGmiR1140MIRNAmiRBase21-BestBlastHit
bna-MIR167b-m2Brassica napus (Rapeseed) 1LK036283:5705-5828-380.13UGAUUAGAUCAUGUUCGCAGUmiR167MIRNAmiRBase21-BestBlastHit
bna-MIR397b-m1Brassica napus (Rapeseed) 1LK036851:2650-2745-250.09UCAACGUUGGCUCAAUUAUGUmiR397siRNA21miRBase21-BestBlastHit
bna-MIR395c-m1Brassica napus (Rapeseed) 1LK037681:2518-2615+170.06CUGAAGUGUUUGGGGGAACUCmiR395nearMIRNAmiRBase21-BestBlastHit
bna-MIR6033-m1Brassica napus (Rapeseed) 1LK043614:2659-2768+230.08UGAACCAGAUAGAGUGGGACUmiR6033nearMIRNAmiRBase21-BestBlastHit
bna-MIR6031-m5Brassica napus (Rapeseed) 1LK045481:2342-2412-280.10UGAAUUUAAGAGGUUCGGAGCGGUsiRNA24miRBase21-BestBlastHit
bna-MIR390a-m2Brassica napus (Rapeseed) 1LK047231:653-796+390.13CGCUAUCCAUCCUGAGUUCUmiR390nearMIRNAmiRBase21-BestBlastHit
bna-MIR160a-m1Brassica napus (Rapeseed) 1LK047858:493-611+1,6555.68GCGUAUGAGGAGCCAUGCAUAmiR160MIRNAmiRBase21-BestBlastHit
bna-MIR2111d-m1Brassica napus (Rapeseed) 1LK049374:1553-1664-870.30AUCCUCGGGAUACGGAUUACCmiR2111nearMIRNAmiRBase21-BestBlastHit
bna-MIR160a-m2Brassica napus (Rapeseed) 1LK049481:491-609+2,4498.40GCGUAUGAGGAGCCAUGCAUAmiR160MIRNAmiRBase21-BestBlastHit
bna-MIR168b-m1Brassica napus (Rapeseed) 1LK049793:1500-1629-15,85154.35UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAmiRBase21-BestBlastHit