Data from Lunardon et al. (2020)

Annotations viewer

Genome

Gossypium hirsutum (Upland Cotton) genome build 1.1 (ghr-b1.1)

Version v1.1 of Gossypium hirsutum cv. Texas Marker-1 from CottonGen

Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
ghr-MIR394b-m1	Gossypium hirsutum (Upland Cotton) 1.1	A01:90441954-90442118	-	227	0.25	GGAGGCGGCCAGUAUGUCAAA	miR394	siRNA21	miRBase21-BestBlastHit
ghr-MIR399b-m1	Gossypium hirsutum (Upland Cotton) 1.1	A10:2992569-2992696	+	1	0.00	CGCCAAUGGAGAUUUGUCCGG	miR399	siRNA21	miRBase21-BestBlastHit
ghr-MIR399c-m1	Gossypium hirsutum (Upland Cotton) 1.1	A12:83444746-83444819	-	322	0.35	CAGGGCUUCUCUGCAUUGGCA		siRNA21	miRBase21-BestBlastHit
ghr-MIR394b-m2	Gossypium hirsutum (Upland Cotton) 1.1	D01:54017333-54017497	-	206	0.22	GGAGGCGGCCAGUAUGUCAAA	miR394	siRNA21	miRBase21-BestBlastHit
ghr-MIR7512-m1	Gossypium hirsutum (Upland Cotton) 1.1	D05:25619077-25619414	-	1,026	1.11	UGCUACUUGUAGUUAUGCAUG	miR7512	siRNA21	miRBase21-BestBlastHit
ghr-MIR160-m2	Gossypium hirsutum (Upland Cotton) 1.1	D05:31852168-31852277	-	37,867	40.90	GCGUAUGAGGAGCCAUGCAUG	miR160	siRNA21	miRBase21-BestBlastHit
ghr-MIR167b-m2	Gossypium hirsutum (Upland Cotton) 1.1	D11:12516363-12516468	+	150	0.16	GGAUCAUGUGGUAGCUUCACC	miR167	siRNA21	miRBase21-BestBlastHit
ghr-MIR399c-m2	Gossypium hirsutum (Upland Cotton) 1.1	D12:55476033-55476106	-	342	0.37	CAGGGCUUCUCUGCAUUGGCA		siRNA21	miRBase21-BestBlastHit
ghr-MIR167b-m3	Gossypium hirsutum (Upland Cotton) 1.1	scaffold199666:119-224	-	160	0.17	AUGGGAUCAUGUGGUAGCUUCACC	miR167	siRNA21	miRBase21-BestBlastHit
ghr-MIR394b-m3	Gossypium hirsutum (Upland Cotton) 1.1	scaffold242935:22-186	+	232	0.25	GGAGGCGGCCAGUAUGUCAAA	miR394	siRNA21	miRBase21-BestBlastHit