het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Solanum tuberosum (Potato) genome build 4.04 (stu-b4.04)

Version v4.04 of Solanum tuberosum cv. DM1-3 516 R44 from Spud DB

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
stu-MIR8011b-m1Solanum tuberosum (Potato) 4.04chr03:38286719-38286797+2,0553.32UGAGACAAAAAGAAGCCUCACAsiRNA22miRBase21-BestBlastHit
stu-MIR8032c-m1Solanum tuberosum (Potato) 4.04chr04:5207574-5207621.420.07CGGCAUGACUCCCGAGGUUUUCmiR8032siRNA22miRBase21-BestBlastHit
stu-MIR8032b-m3Solanum tuberosum (Potato) 4.04chr04:52049060-52049107.540.09UGGUCGGCAUGACUCCCGAGGUmiR8032siRNA22miRBase21-BestBlastHit
stu-MIR8032f-m3Solanum tuberosum (Potato) 4.04chr04:52049060-52049107.540.09UGGUCGGCAUGACUCCCGAGGUmiR8032siRNA22miRBase21-BestBlastHit
stu-MIR8032g-m3Solanum tuberosum (Potato) 4.04chr04:52049060-52049107.540.09UGGUCGGCAUGACUCCCGAGGUmiR8032siRNA22miRBase21-BestBlastHit
stu-MIR8032b-m4Solanum tuberosum (Potato) 4.04chr12:20608885-20608932.330.05UGGUCGGCAUGACUCCCGAGGUmiR8032siRNA22miRBase21-BestBlastHit
stu-MIR8032f-m4Solanum tuberosum (Potato) 4.04chr12:20608885-20608932.330.05UGGUCGGCAUGACUCCCGAGGUmiR8032siRNA22miRBase21-BestBlastHit
stu-MIR8032g-m4Solanum tuberosum (Potato) 4.04chr12:20608885-20608932.330.05UGGUCGGCAUGACUCCCGAGGUmiR8032siRNA22miRBase21-BestBlastHit
stu-MIR8032b-m5Solanum tuberosum (Potato) 4.04chr12:20948236-20948283.50.01AGGAUUGUAGCAUGGUCGGCAUGAsiRNA22miRBase21-BestBlastHit
stu-MIR8032f-m5Solanum tuberosum (Potato) 4.04chr12:20948236-20948283.50.01AGGAUUGUAGCAUGGUCGGCAUGAsiRNA22miRBase21-BestBlastHit
stu-MIR8032g-m5Solanum tuberosum (Potato) 4.04chr12:20948236-20948283.50.01AGGCCUGUAGCAUGGUCGGCAUsiRNA22miRBase21-BestBlastHit
stu-MIR8032b-m1Solanum tuberosum (Potato) 4.04ChrUn:19747824-19747871.50.01UGGUCGGCAUGACUCCCGAGGUmiR8032siRNA22miRBase21-BestBlastHit
stu-MIR8032f-m1Solanum tuberosum (Potato) 4.04ChrUn:19747824-19747871.50.01UGGUCGGCAUGACUCCCGAGGUmiR8032siRNA22miRBase21-BestBlastHit
stu-MIR8032g-m1Solanum tuberosum (Potato) 4.04ChrUn:19747824-19747871.50.01UGGUCGGCAUGACUCCCGAGGUmiR8032siRNA22miRBase21-BestBlastHit