Data from Lunardon et al. (2020)

Annotations viewer

Genome

Solanum tuberosum (Potato) genome build 4.04 (stu-b4.04)

Version v4.04 of Solanum tuberosum cv. DM1-3 516 R44 from Spud DB

Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
stu-MIR8005b-m1	Solanum tuberosum (Potato) 4.04	chr01:1243502-1243619	-	905	1.46	AGGUUUAGAGUUUAAGGUUUAGAG	miR8005	nearMIRNA	miRBase21-BestBlastHit
stu-MIR8021-m1	Solanum tuberosum (Potato) 4.04	chr01:51401637-51401855	+	27	0.04	CGAACUUGACACUUCUGGUUAA	miR8021	nearMIRNA	miRBase21-BestBlastHit
stu-MIR8005a-m1	Solanum tuberosum (Potato) 4.04	chr02:1478170-1478296	+	33	0.05	AGGUUUAGAGUUUAAGGUUUAGAG	miR8005	nearMIRNA	miRBase21-BestBlastHit
stu-MIR156b-m1	Solanum tuberosum (Potato) 4.04	chr02:22099737-22099823	+	211,999	342.94	UUGACAGAAGAUAGAGAGCAC	miR156	nearMIRNA	miRBase21-BestBlastHit
stu-MIR399i-m1	Solanum tuberosum (Potato) 4.04	chr03:41788772-41788865	-	1,026	1.66	GGGCUACACUCUAUUGGCAUG	miR399	nearMIRNA	miRBase21-BestBlastHit
stu-MIR399e-m1	Solanum tuberosum (Potato) 4.04	chr03:41913233-41913296	-	49	0.08	UGCCAAAGGAGAGCUGCCCUG	miR399	nearMIRNA	miRBase21-BestBlastHit
stu-MIR399c-m1	Solanum tuberosum (Potato) 4.04	chr03:41919894-41919957	-	86	0.14	AACAGUGGUAGGGCUACUCUC	miR399	nearMIRNA	miRBase21-BestBlastHit
stu-MIR399d-m1	Solanum tuberosum (Potato) 4.04	chr03:41919894-41919957	-	86	0.14	AACAGUGGUAGGGCUACUCUC	miR399	nearMIRNA	miRBase21-BestBlastHit
stu-MIR399l-m2	Solanum tuberosum (Potato) 4.04	chr03:41933715-41933778	+	7	0.01	GGGCUACUCUCUAUUGGCAUG	miR399	nearMIRNA	miRBase21-BestBlastHit
stu-MIR399m-m2	Solanum tuberosum (Potato) 4.04	chr03:41933715-41933778	+	7	0.01	GGGCUACUCUCUAUUGGCAUG	miR399	nearMIRNA	miRBase21-BestBlastHit
stu-MIR399b-m2	Solanum tuberosum (Potato) 4.04	chr03:41940518-41940581	-	16	0.03	UGCCAAAGGAGAGCUGCCCUG	miR399	nearMIRNA	miRBase21-BestBlastHit
stu-MIR399k-m2	Solanum tuberosum (Potato) 4.04	chr03:41943938-41944001	+	5	0.01	GGAAACAGUGAUAGGGCUACUCUC		nearMIRNA	miRBase21-BestBlastHit
stu-MIR399o-m2	Solanum tuberosum (Potato) 4.04	chr03:41943938-41944001	+	5	0.01	GGAAACAGUGAUAGGGCUACUCUC		nearMIRNA	miRBase21-BestBlastHit
stu-MIR8022-m1	Solanum tuberosum (Potato) 4.04	chr04:35311771-35311846	+	104	0.17	UUUAAAUGAGAAUUUUGGACUAUU	miR8022	nearMIRNA	miRBase21-BestBlastHit
stu-MIR171e-m1	Solanum tuberosum (Potato) 4.04	chr06:50643762-50643839	+	357	0.58	UGAUUGAGCCGUGCCAAUAUC	miR171	nearMIRNA	miRBase21-BestBlastHit
stu-MIR156i-m1	Solanum tuberosum (Potato) 4.04	chr08:35042899-35042986	-	4	0.01	GCUCACUGCUCUAUCUGUCACC	miR156	nearMIRNA	miRBase21-BestBlastHit
stu-MIR1919-m1	Solanum tuberosum (Potato) 4.04	chr08:41545279-41545374	+	307	0.50	UCCGUUAGUCCUGUCGCAGAUG	miR1919	nearMIRNA	miRBase21-BestBlastHit
stu-MIR169g-m1	Solanum tuberosum (Potato) 4.04	chr08:43869183-43869275	+	318	0.51	GGCAGUCAUCUAUGGCUUUGU		nearMIRNA	miRBase21-BestBlastHit
stu-MIR169h-m1	Solanum tuberosum (Potato) 4.04	chr08:43873228-43873308	+	952	1.54	GGCAGUCAUCUUGGGCUAUA	miR169	nearMIRNA	miRBase21-BestBlastHit
stu-MIR8045-m1	Solanum tuberosum (Potato) 4.04	chr12:1520102-1520190	+	5	0.01	GAUUGAUAGUUGAGGUGUGUUU	miR8045	nearMIRNA	miRBase21-BestBlastHit
stu-MIR8023-m1	Solanum tuberosum (Potato) 4.04	ChrUn:39036903-39037034	+	18	0.03	AUGCAGUUUUGGUUGCCAAUG		nearMIRNA	miRBase21-BestBlastHit