Data from Lunardon et al. (2020)

Annotations viewer

Genome

Solanum tuberosum (Potato) genome build 4.04 (stu-b4.04)

Version v4.04 of Solanum tuberosum cv. DM1-3 516 R44 from Spud DB

Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
stu-MIR395e-m1	Solanum tuberosum (Potato) 4.04	chr00:30318910-30318978	.	12	0.02	CUGAAGUGUUUGGGGGAACUC	miR395	OtherRNA	miRBase21-BestBlastHit
stu-MIR395g-m1	Solanum tuberosum (Potato) 4.04	chr00:30337125-30337199	.	6	0.01	CUGAAGUGUUUGGGGGAAC	miR395	OtherRNA	miRBase21-BestBlastHit
stu-MIR395d-m3	Solanum tuberosum (Potato) 4.04	chr00:32760319-32760390	.	4	0.01	CUGAAGUGUUUGGGGGAACUC	miR395	OtherRNA	miRBase21-BestBlastHit
stu-MIR395j-m3	Solanum tuberosum (Potato) 4.04	chr00:32760319-32760390	.	4	0.01	CUGAAGUGUUUGGGGGAACUC	miR395	OtherRNA	miRBase21-BestBlastHit
stu-MIR7991a-m9	Solanum tuberosum (Potato) 4.04	chr01:1892701-1892747	+	3	0.01	AGGAGGUCGGAAUUUUUAAU	miR7991	OtherRNA	miRBase21-BestBlastHit
stu-MIR7991b-m9	Solanum tuberosum (Potato) 4.04	chr01:1892701-1892747	+	3	0.01	AUGUCGGUAUUAUUUUG		OtherRNA	miRBase21-BestBlastHit
stu-MIR8024a-m1	Solanum tuberosum (Potato) 4.04	chr01:16960183-16960299	-	5	0.01	UUGGAGGAUUUGAAGACUUAAACU	miR8024	OtherRNA	miRBase21-BestBlastHit
stu-MIR7991a-m11	Solanum tuberosum (Potato) 4.04	chr01:82517955-82518001	+	4	0.01	UCAGGAGGUCGGAAUUUUUAAU		OtherRNA	miRBase21-BestBlastHit
stu-MIR7991b-m11	Solanum tuberosum (Potato) 4.04	chr01:82517955-82518001	+	4	0.01	ACCUCAGGAGGUCGGAAUUUUUAA		OtherRNA	miRBase21-BestBlastHit
stu-MIR169a-m1	Solanum tuberosum (Potato) 4.04	chr03:3880084-3880203	+	29	0.05	GAUAGCCAAGGAUGACUUGCCUG	miR169	OtherRNA	miRBase21-BestBlastHit
stu-MIR169b-m1	Solanum tuberosum (Potato) 4.04	chr03:3887697-3887808	-	56	0.09	GGCAGUCUCCUUGGCUACUC	miR169	OtherRNA	miRBase21-BestBlastHit
stu-MIR395a-m1	Solanum tuberosum (Potato) 4.04	chr03:15682738-15682809	-	1	0.00	CUGCUGAAGUGUUUGGGGGAACUCU	miR395	OtherRNA	miRBase21-BestBlastHit
stu-MIR395b-m1	Solanum tuberosum (Potato) 4.04	chr03:15682738-15682809	-	1	0.00	CUGCUGAAGUGUUUGGGGGAACUCU	miR395	OtherRNA	miRBase21-BestBlastHit
stu-MIR1886a-m7	Solanum tuberosum (Potato) 4.04	chr03:51994952-51995021	-	1	0.00	CCCGAUAUGGUAUCGUGAGAUGAAAUCAGCGUUUGGACAUGC		OtherRNA	miRBase21-BestBlastHit
stu-MIR1886b-m7	Solanum tuberosum (Potato) 4.04	chr03:51994952-51995021	-	1	0.00	CCCGAUAUGGUAUCGUGAGAUGAAAUCAGCGUUUGGACAUGC		OtherRNA	miRBase21-BestBlastHit
stu-MIR1886c-m7	Solanum tuberosum (Potato) 4.04	chr03:51994952-51995021	-	1	0.00	CCCGAUAUGGUAUCGUGAGAUGAAAUCAGCGUUUGGACAUGC		OtherRNA	miRBase21-BestBlastHit
stu-MIR1886d-m7	Solanum tuberosum (Potato) 4.04	chr03:51994952-51995021	-	1	0.00	CCCGAUAUGGUAUCGUGAGAUGAAAUCAGCGUUUGGACAUGC		OtherRNA	miRBase21-BestBlastHit
stu-MIR1886e-m7	Solanum tuberosum (Potato) 4.04	chr03:51994952-51995021	-	1	0.00	CCCGAUAUGGUAUCGUGAGAUGAAAUCAGCGUUUGGACAUGC		OtherRNA	miRBase21-BestBlastHit
stu-MIR1886f-m7	Solanum tuberosum (Potato) 4.04	chr03:51994952-51995021	-	1	0.00	CCCGAUAUGGUAUCGUGAGAUGAAAUCAGCGUUUGGACAUGC		OtherRNA	miRBase21-BestBlastHit
stu-MIR8051-m1	Solanum tuberosum (Potato) 4.04	chr04:1636656-1636698	.	31	0.05	UUUCUACCAUACUAUUUAUCAA		OtherRNA	miRBase21-BestBlastHit
stu-MIR169e-m1	Solanum tuberosum (Potato) 4.04	chr07:3404548-3404620	-	1,377	2.23	UAGCCAAGGAUGACUUGCCU	miR169	OtherRNA	miRBase21-BestBlastHit
stu-MIR169c-m1	Solanum tuberosum (Potato) 4.04	chr07:3407229-3407313	+	183	0.30	UAGCCAAGGAUGACUUGCCUG	miR169	OtherRNA	miRBase21-BestBlastHit
stu-MIR1886h-m1	Solanum tuberosum (Potato) 4.04	chr07:40313326-40313377	+	10	0.02	AUUUUACGUUGAUUUCAUCUCAUG	miR1886	OtherRNA	miRBase21-BestBlastHit
stu-MIR5303c-m1	Solanum tuberosum (Potato) 4.04	chr11:39481156-39481210	.	7	0.01	GCGGGUGCGUGUCGGAUUCUCCAU		OtherRNA	miRBase21-BestBlastHit