het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Solanum lycopersicum (Tomato) genome build 2.5 (sly-b2.5)

Version v2.5 of Solanum lycopersicum cv. Heinz 1706 from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
sly-MIR6022-m1Solanum lycopersicum (Tomato) 2.511:3158675-3158925+670,575453.85UGGAAGGGAGAAUAUCCAGGAmiR6022siRNA21miRBase21-BestBlastHit
sly-MIR9478-m1Solanum lycopersicum (Tomato) 2.511:52996644-52996848+2,1801.48UUCGAUGACAUAUUUGAGCCUmiR9478siRNA21miRBase21-BestBlastHit
sly-MIR171c-m1Solanum lycopersicum (Tomato) 2.512:519779-519899-13,8639.38UUGAGCCGCGCCAAUAUCACGmiR171siRNA21miRBase21-BestBlastHit
sly-MIR171d-m1Solanum lycopersicum (Tomato) 2.512:2882790-2882901.2,8671.94UUGAGCCGCGCCAAUAUCACUmiR171siRNA21miRBase21-BestBlastHit
sly-MIR395b-m1Solanum lycopersicum (Tomato) 2.55:1713691-1713791.3460.23CUGAAGUGUUUGGGGGAACUCmiR395siRNA21miRBase21-BestBlastHit
sly-MIR397-m1Solanum lycopersicum (Tomato) 2.57:66059126-66059241-33,99223.01AUUGAGUGCAGCGUUGAUGACmiR397siRNA21miRBase21-BestBlastHit
sly-MIR1919c-m1Solanum lycopersicum (Tomato) 2.58:56567231-56567374+3,9122.65UUCCGGUAGUCCUGUCGCAGAUGmiR1919siRNA21miRBase21-BestBlastHit
sly-MIR1919b-m1Solanum lycopersicum (Tomato) 2.58:56580749-56580892+4,0492.74UUCCGGUAGUCCUGUCGCAGAUGmiR1919siRNA21miRBase21-BestBlastHit
sly-MIR9472-m1Solanum lycopersicum (Tomato) 2.58:58966598-58966830+32,91022.27UUUCAGUAGACGUUGUGAAUAmiR9472siRNA21miRBase21-BestBlastHit
sly-MIR9474-m1Solanum lycopersicum (Tomato) 2.58:62139543-62139921-133,76790.54UCUUGGAUUUUAUCGGAGUUAmiR9474siRNA21miRBase21-BestBlastHit
sly-MIR319a-m1Solanum lycopersicum (Tomato) 2.58:64783536-64783704-42,35228.66UUGGACUGAAGGGAGCUCCCUmiR319siRNA21miRBase21-BestBlastHit
sly-MIR9475-m1Solanum lycopersicum (Tomato) 2.59:61391409-61392859-96,22465.13AACGAUCUCUACAUUGUAGGCmiR9475siRNA21miRBase21-BestBlastHit