| Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
|---|
| sly-MIR6026-m1 | Solanum lycopersicum (Tomato) 2.5 | 1:832340-832581 | + | 55,261 | 37.40 | UUCUUGGCUAGAGUUGUAUUGC | miR6026 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR403-m1 | Solanum lycopersicum (Tomato) 2.5 | 1:78368928-78369069 | + | 117,981 | 79.85 | CUAGAUUCACGCACAAGCUCG | miR403 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR6024-m1 | Solanum lycopersicum (Tomato) 2.5 | 1:83238914-83239030 | - | 300,033 | 203.07 | UUUAGCAAGAGUUGUUUUACC | miR6024 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR9476-m1 | Solanum lycopersicum (Tomato) 2.5 | 1:88110498-88110606 | . | 66,825 | 45.23 | AAAAAGAUGCAGGACUAGACC | miR9476 | OtherRNA | miRBase21-BestBlastHit |
| sly-MIR164b-m1 | Solanum lycopersicum (Tomato) 2.5 | 1:89971259-89971354 | + | 74,503 | 50.42 | UGGAGAAGCAGGGCACGUGCA | miR164 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR166c-m1 | Solanum lycopersicum (Tomato) 2.5 | 1:92621085-92621272 | - | 2,296,440 | 1,554.25 | UCGGACCAGGCUUCAUUCCUC | miR166 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR5304-m1 | Solanum lycopersicum (Tomato) 2.5 | 1:97204436-97204576 | + | 5,610 | 3.80 | UCAAUGCUACAUACUCAUCCC | miR5304 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR477-m1 | Solanum lycopersicum (Tomato) 2.5 | 10:3641768-3641882 | - | 4,913 | 3.33 | UGUCUCUCCCUCAAGGGCUCC | miR477 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR390a-m1 | Solanum lycopersicum (Tomato) 2.5 | 10:59349779-59349941 | - | 58,099 | 39.32 | AAGCUCAGGAGGGAUAGCACC | miR390 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR6027-m1 | Solanum lycopersicum (Tomato) 2.5 | 10:62857981-62858143 | + | 478,336 | 323.74 | UGAAUCCUUCGGCUAUCCAUAA | miR6027 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR6022-m1 | Solanum lycopersicum (Tomato) 2.5 | 11:3158675-3158925 | + | 670,575 | 453.85 | UGGAAGGGAGAAUAUCCAGGA | miR6022 | siRNA21 | miRBase21-BestBlastHit |
| sly-MIR9478-m1 | Solanum lycopersicum (Tomato) 2.5 | 11:52996644-52996848 | + | 2,180 | 1.48 | UUCGAUGACAUAUUUGAGCCU | miR9478 | siRNA21 | miRBase21-BestBlastHit |
| sly-MIR172b-m1 | Solanum lycopersicum (Tomato) 2.5 | 11:54397709-54397843 | + | 32,870 | 22.25 | AGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR171c-m1 | Solanum lycopersicum (Tomato) 2.5 | 12:519779-519899 | - | 13,863 | 9.38 | UUGAGCCGCGCCAAUAUCACG | miR171 | siRNA21 | miRBase21-BestBlastHit |
| sly-MIR9471a-m1 | Solanum lycopersicum (Tomato) 2.5 | 12:1977726-1977906 | - | 771,912 | 522.44 | UUGGCUGAGUGAGCAUCACGG | miR9471 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR9471b-m1 | Solanum lycopersicum (Tomato) 2.5 | 12:1979337-1979576 | - | 346,045 | 234.21 | UUGGCUGAGUGAGCAUCACUG | miR9471 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR171d-m1 | Solanum lycopersicum (Tomato) 2.5 | 12:2882790-2882901 | . | 2,867 | 1.94 | UUGAGCCGCGCCAAUAUCACU | miR171 | siRNA21 | miRBase21-BestBlastHit |
| sly-MIR396a-m1 | Solanum lycopersicum (Tomato) 2.5 | 12:2905644-2905807 | - | 675,807 | 457.39 | UUCCACAGCUUUCUUGAACUG | miR396 | OtherRNA | miRBase21-BestBlastHit |
| sly-MIR168b-m1 | Solanum lycopersicum (Tomato) 2.5 | 12:65227958-65228125 | + | 1,680,078 | 1,137.09 | UCGCUUGGUGCAGGUCGGGAC | miR168 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR6023-m1 | Solanum lycopersicum (Tomato) 2.5 | 12:66469562-66469795 | - | 168,930 | 114.33 | UUACUACGGUCAGGAAUCUUAU | miR6023 | siRNA22 | miRBase21-BestBlastHit |
| sly-MIR167b-m1 | Solanum lycopersicum (Tomato) 2.5 | 2:38817780-38818076 | - | 35,899 | 24.30 | UAAAGCUGCCAGCAUGAUCUGG | miR167 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR171b-m1 | Solanum lycopersicum (Tomato) 2.5 | 2:44783518-44783603 | - | 3,647 | 2.47 | AUAUUGGUGCGGUUCAAUUAG | miR171 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR171a-m1 | Solanum lycopersicum (Tomato) 2.5 | 2:46752782-46752903 | - | 5,667 | 3.84 | UAUUGGCCUGGUUCACUCAGA | miR171 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR156b-m1 | Solanum lycopersicum (Tomato) 2.5 | 2:52477662-52477745 | + | 293,360 | 198.55 | UUGACAGAAGAUAGAGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR156c-m1 | Solanum lycopersicum (Tomato) 2.5 | 2:52477662-52477745 | + | 293,360 | 198.55 | UUGACAGAAGAUAGAGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR399-m1 | Solanum lycopersicum (Tomato) 2.5 | 3:3965922-3965992 | + | 4,944 | 3.35 | GGGCUACACUCUAUUGGCAUG | miR399 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR319c-m1 | Solanum lycopersicum (Tomato) 2.5 | 3:56451852-56452046 | + | 61,639 | 41.72 | UUGGACUGAAGGGAGCUCCUU | miR319 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR482a-m1 | Solanum lycopersicum (Tomato) 2.5 | 3:64766256-64766347 | + | 144,269 | 97.64 | UUUCCAAUUCCACCCAUUCCUA | miR482 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR159-m1 | Solanum lycopersicum (Tomato) 2.5 | 3:67733015-67733192 | + | 2,441,350 | 1,652.33 | UUUGGAUUGAAGGGAGCUCUA | miR159 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR5300-m1 | Solanum lycopersicum (Tomato) 2.5 | 4:423125-423389 | + | 134,410 | 90.97 | UCCCCAGUCCAGGCAUUCCAAC | miR5300 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR5303-m1 | Solanum lycopersicum (Tomato) 2.5 | 4:11973314-11973417 | . | 244 | 0.17 | GUUGCUCGAACUCUUCAAAAAGGU | miR5303 | siRNA24 | miRBase21-BestBlastHit |
| sly-MIR482e-m1 | Solanum lycopersicum (Tomato) 2.5 | 4:56023736-56023923 | + | 913,022 | 617.94 | UCUUUCCUACUCCUCCCAUACC | miR482 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR394-m1 | Solanum lycopersicum (Tomato) 2.5 | 4:65891077-65891276 | + | 23,973 | 16.23 | UUGGCAUUCUGUCCACCUCC | miR394 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR395a-m1 | Solanum lycopersicum (Tomato) 2.5 | 5:1703152-1703350 | + | 739 | 0.50 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR395b-m1 | Solanum lycopersicum (Tomato) 2.5 | 5:1713691-1713791 | . | 346 | 0.23 | CUGAAGUGUUUGGGGGAACUC | miR395 | siRNA21 | miRBase21-BestBlastHit |
| sly-MIR9479-m1 | Solanum lycopersicum (Tomato) 2.5 | 5:65132400-65132649 | + | 13,224 | 8.95 | GAGAAUGGUAGAGGGUCGGACC | miR9479 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR160a-m1 | Solanum lycopersicum (Tomato) 2.5 | 5:65436314-65436442 | - | 14,846 | 10.05 | UGCCUGGCUCCCUGUAUGCCA | miR160 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR319b-m1 | Solanum lycopersicum (Tomato) 2.5 | 6:1551676-1551967 | + | 355,920 | 240.89 | UUGGACUGAAGGGAGCUCCCU | miR319 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR166a-m1 | Solanum lycopersicum (Tomato) 2.5 | 6:2516284-2516394 | - | 2,248,180 | 1,521.59 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR4376-m1 | Solanum lycopersicum (Tomato) 2.5 | 6:4541880-4541970 | + | 193,948 | 131.27 | ACGCAGGAGAGAUGAUGCUGGA | miR391 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR482d-m1 | Solanum lycopersicum (Tomato) 2.5 | 6:37380095-37380240 | - | 36,429 | 24.66 | UUUCCUAUUCCACCCAUGCCAA | miR482 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR482b-m1 | Solanum lycopersicum (Tomato) 2.5 | 6:37380417-37380541 | - | 362,481 | 245.33 | UCUUGCCUACACCGCCCAUGCC | miR482 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR482c-m1 | Solanum lycopersicum (Tomato) 2.5 | 6:37388175-37388285 | - | 34,180 | 23.13 | UCUUGCCAAUACCGCCCAUUCC | miR482 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR156a-m1 | Solanum lycopersicum (Tomato) 2.5 | 6:42851776-42851875 | - | 3,412,889 | 2,309.87 | UUGACAGAAGAUAGAGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR162-m1 | Solanum lycopersicum (Tomato) 2.5 | 6:43073220-43073315 | + | 213,216 | 144.31 | UCGAUAAACCUCUGCAUCCAG | miR162 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR9477-m1 | Solanum lycopersicum (Tomato) 2.5 | 6:43739860-43740092 | + | 5,004 | 3.39 | UUGGGAAAGGGAACAACUGAUAGU | miR9477 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR172a-m1 | Solanum lycopersicum (Tomato) 2.5 | 6:46528836-46528941 | + | 35,947 | 24.33 | AGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR167a-m1 | Solanum lycopersicum (Tomato) 2.5 | 6:49339356-49339471 | - | 24,218 | 16.39 | UGAAGCUGCCAGCAUGAUCUA | miR167 | nearMIRNA | miRBase21-BestBlastHit |
| sly-MIR169d-m1 | Solanum lycopersicum (Tomato) 2.5 | 7:2171588-2171763 | - | 936 | 0.63 | UUGUCAUUUGGUCGUAGGCAAG | miR169 | OtherRNA | miRBase21-BestBlastHit |
| sly-MIR169b-m1 | Solanum lycopersicum (Tomato) 2.5 | 7:2174563-2174767 | . | 3,405 | 2.31 | GGCAGUCUCCUUGGCUACC | miR169 | OtherRNA | miRBase21-BestBlastHit |
| sly-MIR396b-m1 | Solanum lycopersicum (Tomato) 2.5 | 7:2628748-2628897 | - | 755,449 | 511.29 | UUCCACAGCUUUCUUGAACUU | miR396 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR9473-m1 | Solanum lycopersicum (Tomato) 2.5 | 7:3076297-3076415 | + | 4,211 | 2.85 | UGGCUGUAAAUCUAAACUCGU | miR9473 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR169c-m1 | Solanum lycopersicum (Tomato) 2.5 | 7:4210774-4210920 | + | 13,860 | 9.38 | CAGCCAAGGAUGACUUGCCG | miR169 | siRNA24 | miRBase21-BestBlastHit |
| sly-MIR169a-m1 | Solanum lycopersicum (Tomato) 2.5 | 7:4225343-4225491 | . | 4,411 | 2.99 | AGCAGCCAAGGAUGACUUGCCGG | miR169 | siRNA23 | miRBase21-BestBlastHit |
| sly-MIR5302a-m1 | Solanum lycopersicum (Tomato) 2.5 | 7:4228975-4229187 | + | 356,660 | 241.39 | UGAAAUGCUAUAGUUGGAAAGU | miR5302 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR5302b-m1 | Solanum lycopersicum (Tomato) 2.5 | 7:4228975-4229187 | + | 356,660 | 241.39 | UGAAAUGCUAUAGUUGGAAAGU | miR5302 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR9469-m1 | Solanum lycopersicum (Tomato) 2.5 | 7:58623979-58624121 | . | 3,023 | 2.05 | AUUCGGUCUUCUUAUGUGGAC | miR9469 | siRNA24 | miRBase21-BestBlastHit |
| sly-MIR171e-m1 | Solanum lycopersicum (Tomato) 2.5 | 7:60765650-60765756 | + | 12,144 | 8.22 | UUGAGCCGCGUCAAUAUCUCU | miR171 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR397-m1 | Solanum lycopersicum (Tomato) 2.5 | 7:66059126-66059241 | - | 33,992 | 23.01 | AUUGAGUGCAGCGUUGAUGAC | miR397 | siRNA21 | miRBase21-BestBlastHit |
| sly-MIR9470-m1 | Solanum lycopersicum (Tomato) 2.5 | 8:393508-393994 | + | 355,002 | 240.27 | UUUGGCUCAUGGAUUUUAGC | miR9470 | siRNA20 | miRBase21-BestBlastHit |
| sly-MIR168a-m1 | Solanum lycopersicum (Tomato) 2.5 | 8:558753-558911 | + | 707,234 | 478.66 | UCGCUUGGUGCAGGUCGGGAC | miR168 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR156d-m1 | Solanum lycopersicum (Tomato) 2.5 | 8:51913686-51913852 | - | 5,967 | 4.04 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR156e-m1 | Solanum lycopersicum (Tomato) 2.5 | 8:51945235-51945339 | - | 15,238 | 10.31 | GCUUACUCUCUAUCUGUCACC | miR156 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR1917-m1 | Solanum lycopersicum (Tomato) 2.5 | 8:52099541-52099671 | . | 787 | 0.53 | AAUACCGGUAAAGACUUUAGCACU | miR1917 | siRNA24 | miRBase21-BestBlastHit |
| sly-MIR1919c-m1 | Solanum lycopersicum (Tomato) 2.5 | 8:56567231-56567374 | + | 3,912 | 2.65 | UUCCGGUAGUCCUGUCGCAGAUG | miR1919 | siRNA21 | miRBase21-BestBlastHit |
| sly-MIR1919b-m1 | Solanum lycopersicum (Tomato) 2.5 | 8:56580749-56580892 | + | 4,049 | 2.74 | UUCCGGUAGUCCUGUCGCAGAUG | miR1919 | siRNA21 | miRBase21-BestBlastHit |
| sly-MIR1919a-m1 | Solanum lycopersicum (Tomato) 2.5 | 8:56612335-56612457 | + | 39,176 | 26.52 | ACGAGAGUCAUCUGUGACAGG | miR1919 | nearMIRNA | miRBase21-BestBlastHit |
| sly-MIR1916-m1 | Solanum lycopersicum (Tomato) 2.5 | 8:57414133-57414346 | . | 19,271 | 13.04 | AGGCACUUCAAGUAGGCGAUGUUC | miR1916 | siRNA24 | miRBase21-BestBlastHit |
| sly-MIR169e-m1 | Solanum lycopersicum (Tomato) 2.5 | 8:57585442-57585633 | + | 32,589 | 22.06 | UGGCAAGCAUCUUUGGCGACU | miR169 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR9472-m1 | Solanum lycopersicum (Tomato) 2.5 | 8:58966598-58966830 | + | 32,910 | 22.27 | UUUCAGUAGACGUUGUGAAUA | miR9472 | siRNA21 | miRBase21-BestBlastHit |
| sly-MIR9474-m1 | Solanum lycopersicum (Tomato) 2.5 | 8:62139543-62139921 | - | 133,767 | 90.54 | UCUUGGAUUUUAUCGGAGUUA | miR9474 | siRNA21 | miRBase21-BestBlastHit |
| sly-MIR319a-m1 | Solanum lycopersicum (Tomato) 2.5 | 8:64783536-64783704 | - | 42,352 | 28.66 | UUGGACUGAAGGGAGCUCCCU | miR319 | siRNA21 | miRBase21-BestBlastHit |
| sly-MIR1918-m1 | Solanum lycopersicum (Tomato) 2.5 | 8:65424541-65424690 | . | 9,795 | 6.63 | GAGAAUCGAACUACCGCUAACAGA | miR1918 | siRNA24 | miRBase21-BestBlastHit |
| sly-MIR166b-m1 | Solanum lycopersicum (Tomato) 2.5 | 8:65694593-65694793 | + | 4,679,129 | 3,166.87 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR164a-m1 | Solanum lycopersicum (Tomato) 2.5 | 9:7197971-7198142 | + | 1,318,919 | 892.66 | UGGAGAAGCAGGGCACGUGCA | miR164 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR390b-m1 | Solanum lycopersicum (Tomato) 2.5 | 9:8388184-8388292 | + | 28,369 | 19.20 | AAGCUCAGGAGGGAUAGCGCC | miR390 | MIRNA | miRBase21-BestBlastHit |
| sly-MIR9475-m1 | Solanum lycopersicum (Tomato) 2.5 | 9:61391409-61392859 | - | 96,224 | 65.13 | AACGAUCUCUACAUUGUAGGC | miR9475 | siRNA21 | miRBase21-BestBlastHit |
Data from Lunardon et al. (2020)