het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Medicago truncatula (Barrel Medic) genome build 4.0 (mtr-b4.0)

Version v4.0 of Medicago truncatula cv. A17 from Phytozome

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
mtr-MIR5233-m1Medicago truncatula (Barrel Medic) 4.0chr1:15007726-15007791.30.00UGAGGAGGAUGGCCGUCUGGAmiR5233siRNA21miRBase21-BestBlastHit
mtr-MIR5233-m2Medicago truncatula (Barrel Medic) 4.0chr1:15021843-15021908.30.00UCAUGUUGGUGAGGAGGAUGGmiR5233siRNA21miRBase21-BestBlastHit
mtr-MIR5233-m3Medicago truncatula (Barrel Medic) 4.0chr1:15028961-15029026.50.01UGAGGAGGAUGGCCGUCUGGAmiR5233siRNA21miRBase21-BestBlastHit
mtr-MIR5240-m1Medicago truncatula (Barrel Medic) 4.0chr1:15992794-15992865.15,08417.50UCGAUUAAUAUUGUGGAAGCGmiR5240siRNA21miRBase21-BestBlastHit
mtr-MIR167a-m1Medicago truncatula (Barrel Medic) 4.0chr1:31573070-31573389-2,7043.14UGAAGCUGCCAGCAUGAUCUAmiR167siRNA21miRBase21-BestBlastHit
mtr-MIR482-m1Medicago truncatula (Barrel Medic) 4.0chr1:49422925-49423028-282,070327.30UUACCUACACCUCCCAUGCCUAmiR482siRNA21miRBase21-BestBlastHit
mtr-MIR397-m1Medicago truncatula (Barrel Medic) 4.0chr2:2843408-2843527+8,98010.42UUGAGUGCAGCGUUGAUGAAAmiR397siRNA21miRBase21-BestBlastHit
mtr-MIR5741b-m1Medicago truncatula (Barrel Medic) 4.0chr2:5738529-5738657.540.06UAGGGACUAAAUUGAUGGUUUmiR5741siRNA21miRBase21-BestBlastHit
mtr-MIR169c-m1Medicago truncatula (Barrel Medic) 4.0chr2:16049929-16050013+15,80118.33CAGCCAAGGGUGAUUUGCCGGmiR169siRNA21miRBase21-BestBlastHit
mtr-MIR2087-m1Medicago truncatula (Barrel Medic) 4.0chr2:16118974-16119238-9,33010.83GUCGGUUUCUUACUUCGGUAGmiR2087siRNA21miRBase21-BestBlastHit
mtr-MIR5241a-m1Medicago truncatula (Barrel Medic) 4.0chr2:17439341-17439415+6210.72UGUGACUGAAUGGAAGAGUGCmiR5241siRNA21miRBase21-BestBlastHit
mtr-MIR5242-m1Medicago truncatula (Barrel Medic) 4.0chr2:17652900-17652965.6030.70UUUGGAUGAAGAUGACAAGGGsiRNA21miRBase21-BestBlastHit
mtr-MIR2609a-m1Medicago truncatula (Barrel Medic) 4.0chr2:17662512-17662768.4560.53UUUGUGAAGAACUCUUUCAUAmiR2609siRNA21miRBase21-BestBlastHit
mtr-MIR2609b-m1Medicago truncatula (Barrel Medic) 4.0chr2:17713538-17713794.1840.21UGGAAUUCAAGUGCUGACCGAmiR5243siRNA21miRBase21-BestBlastHit
mtr-MIR5243-m1Medicago truncatula (Barrel Medic) 4.0chr2:17713752-17713899.3980.46GAAUCAACUGUGGAGCCUGGCsiRNA21miRBase21-BestBlastHit
mtr-MIR2670e-m1Medicago truncatula (Barrel Medic) 4.0chr2:26257338-26257542-6,5527.60UCUCAACAGGACGGAUCACUAmiR2670siRNA21miRBase21-BestBlastHit
mtr-MIR2643a-m1Medicago truncatula (Barrel Medic) 4.0chr2:26324397-26324634-130.02UUUGGGAUCAGAAAUUAGAGAmiR2643siRNA21miRBase21-BestBlastHit
mtr-MIR2679a-m1Medicago truncatula (Barrel Medic) 4.0chr2:36629716-36629834.370.04CCGAGUAACAUAUAGACGUCUmiR2679siRNA21miRBase21-BestBlastHit
mtr-MIR2651-m1Medicago truncatula (Barrel Medic) 4.0chr2:42829743-42829889-5,3046.15UUUGAUUGGUAUGCCUGCAUUmiR2651siRNA21miRBase21-BestBlastHit
mtr-MIR5748-m1Medicago truncatula (Barrel Medic) 4.0chr3:4097358-4097459+26,12730.32ACAAAGACAUUGGAAGGCUUAmiR5748siRNA21miRBase21-BestBlastHit
mtr-MIR2639-m1Medicago truncatula (Barrel Medic) 4.0chr3:10261943-10262039.1400.16CAUAUUGGAAAUUUAGUCGGCmiR2639siRNA21miRBase21-BestBlastHit
mtr-MIR5244-m1Medicago truncatula (Barrel Medic) 4.0chr3:10517779-10517877.2,1922.54UAUCUCAUGAAGAUUGUUGGUmiR5244siRNA21miRBase21-BestBlastHit
mtr-MIR5751-m1Medicago truncatula (Barrel Medic) 4.0chr3:10946425-10946654-1,7192.00CAUCCGAUCAAAUUAAGGGUCmiR5751siRNA21miRBase21-BestBlastHit
mtr-MIR5234-m1Medicago truncatula (Barrel Medic) 4.0chr3:13396075-13396227.60.01UCGAGGAAGCCUUCUGCCAUCmiR5234siRNA21miRBase21-BestBlastHit
mtr-MIR7697-m1Medicago truncatula (Barrel Medic) 4.0chr3:16848902-16849174-18,65121.64UCGGAUAUAGAUCGGAUCAUUsiRNA21miRBase21-BestBlastHit
mtr-MIR5264-m1Medicago truncatula (Barrel Medic) 4.0chr3:21626269-21626377-9,79911.37GUUGAUCAAGGACUUUGCAUCmiR5264siRNA21miRBase21-BestBlastHit
mtr-MIR171h-m1Medicago truncatula (Barrel Medic) 4.0chr3:41952571-41952679-14,47216.79CGAGCCGAAUCAAUAUCACUCmiR171siRNA21miRBase21-BestBlastHit
mtr-MIR2666-m1Medicago truncatula (Barrel Medic) 4.0chr4:4135813-4136237.28,92833.57UAUCAAGGAUAUUGUUGAAAAAGUmiR2666siRNA21miRBase21-BestBlastHit
mtr-MIR5245-m1Medicago truncatula (Barrel Medic) 4.0chr4:4323793-4323862+9,96211.56ACACAGGCAGUACAACCUGGCmiR5245siRNA21miRBase21-BestBlastHit
mtr-MIR5228-m1Medicago truncatula (Barrel Medic) 4.0chr4:4344165-4344318+160.02CUUUCUGGUGUACAACUUGAUmiR5228siRNA21miRBase21-BestBlastHit
mtr-MIR5248-m1Medicago truncatula (Barrel Medic) 4.0chr4:7890452-7890571.4,0724.73AGGAUUUCAAGAGCUACCGGCmiR5248siRNA21miRBase21-BestBlastHit
mtr-MIR5235a-m1Medicago truncatula (Barrel Medic) 4.0chr4:14638748-14638831-8120.94AUAAGGUCAAUGAUUGGCGUGmiR5235siRNA21miRBase21-BestBlastHit
mtr-MIR5235b-m1Medicago truncatula (Barrel Medic) 4.0chr4:14638748-14638831-8120.94AUAAGGUCAAUGAUUGGCGUGmiR5235siRNA21miRBase21-BestBlastHit
mtr-MIR2612-m1Medicago truncatula (Barrel Medic) 4.0chr4:28717349-28717480+6,1027.08UGAUAGUGUCAACUAGUACAGmiR2612siRNA21miRBase21-BestBlastHit
mtr-MIR5556-m1Medicago truncatula (Barrel Medic) 4.0chr4:29723684-29723804-6200.72UGAUGACGGAAGAAAUCCAAAmiR5556siRNA21miRBase21-BestBlastHit
mtr-MIR2645-m1Medicago truncatula (Barrel Medic) 4.0chr4:31477301-31477510.3,9934.63AUUUCUAGAGAUGAGCAUAUAmiR2645siRNA21miRBase21-BestBlastHit
mtr-MIR5262-m1Medicago truncatula (Barrel Medic) 4.0chr4:44762391-44762475-3,3803.92UCUGUCAGUAGACUCAAUUUCmiR5262siRNA21miRBase21-BestBlastHit
mtr-MIR2603-m1Medicago truncatula (Barrel Medic) 4.0chr4:46008698-46008989.690.08UUUUUACAAAUUGCAGGGACAmiR2603siRNA21miRBase21-BestBlastHit
mtr-MIR169k-m1Medicago truncatula (Barrel Medic) 4.0chr4:52969579-52969678.2,4142.80UGAGCCAGGAUGGCUUGCCGGmiR169siRNA21miRBase21-BestBlastHit
mtr-MIR160f-m1Medicago truncatula (Barrel Medic) 4.0chr4:56222501-56222604-1930.22UGCCUGGCUCCCUGCAUGCCAmiR160siRNA21miRBase21-BestBlastHit
mtr-MIR319b-m1Medicago truncatula (Barrel Medic) 4.0chr5:2425536-2425715+81,19594.21UUGGACUGAAGGGAGCUCCCUmiR319siRNA21miRBase21-BestBlastHit
mtr-MIR5557-m1Medicago truncatula (Barrel Medic) 4.0chr5:6164222-6164536-6,0026.96CAACAUUAUCAGACAAGACAGUsiRNA21miRBase21-BestBlastHit
mtr-MIR2670g-m1Medicago truncatula (Barrel Medic) 4.0chr5:7661774-7661975.5550.64AGUGGUCUGUUAGGUUGGGGAmiR2670siRNA21miRBase21-BestBlastHit
mtr-MIR2592bn-m1Medicago truncatula (Barrel Medic) 4.0chr5:8538237-8538430+1790.21GGAAAACAUGAAUGUCGGGUGmiR2592siRNA21miRBase21-BestBlastHit
mtr-MIR171c-m1Medicago truncatula (Barrel Medic) 4.0chr5:9192864-9192968+6450.75UGAUUGAGCCGUGCCAAUAUUmiR171siRNA21miRBase21-BestBlastHit
mtr-MIR1510a-m1Medicago truncatula (Barrel Medic) 4.0chr5:19031768-19031931+263,564305.82UUGUCUUACCCAUUCCUCCCAmiR1510siRNA21miRBase21-BestBlastHit
mtr-MIR2119-m1Medicago truncatula (Barrel Medic) 4.0chr5:19180841-19180970-4,9315.72UCAAAGGGAGGUGUGGAGUAGmiR2119siRNA21miRBase21-BestBlastHit
mtr-MIR2592ah-m1Medicago truncatula (Barrel Medic) 4.0chr5:28881197-28881546+810.09CAACAGGACUCGAGCAUUUCGmiR2592siRNA21miRBase21-BestBlastHit
mtr-MIR5251-m1Medicago truncatula (Barrel Medic) 4.0chr5:30414761-30414890.33,57338.96GACACCAACUAGAUCUACUGUmiR5251siRNA21miRBase21-BestBlastHit
mtr-MIR5252-m1Medicago truncatula (Barrel Medic) 4.0chr5:30416411-30416505.13,73515.94UGAGAGCUCACUGAAGUCUGCmiR5252siRNA21miRBase21-BestBlastHit
mtr-MIR319a-m1Medicago truncatula (Barrel Medic) 4.0chr5:32289763-32289969+48,89356.73CUUGGACUGAAGGGAGCUCCCmiR319siRNA21miRBase21-BestBlastHit
mtr-MIR7696b-m1Medicago truncatula (Barrel Medic) 4.0chr6:14304906-14304998.48,40656.17UUGAAUUAUGAGAACUUGAAGmiR7696siRNA21miRBase21-BestBlastHit
mtr-MIR7696a-m1Medicago truncatula (Barrel Medic) 4.0chr6:14304908-14304995.48,40356.16UUGAAUUAUGAGAACUUGAAGmiR7696siRNA21miRBase21-BestBlastHit
mtr-MIR7696d-m1Medicago truncatula (Barrel Medic) 4.0chr6:14304908-14304995.48,40356.16UUGAAUUAUGAGAACUUGAAGmiR7696siRNA21miRBase21-BestBlastHit
mtr-MIR7696c-m1Medicago truncatula (Barrel Medic) 4.0chr6:14304909-14304994.48,40256.16UUGAAUUAUGAGAACUUGAAGmiR7696siRNA21miRBase21-BestBlastHit
mtr-MIR7696b-m2Medicago truncatula (Barrel Medic) 4.0chr6:14311309-14311401+2440.28UAUGAGAACUUGAAGCAUACUsiRNA21miRBase21-BestBlastHit
mtr-MIR7696a-m2Medicago truncatula (Barrel Medic) 4.0chr6:14311311-14311398+2410.28UAUGAGAACUUGAAGCAUACUsiRNA21miRBase21-BestBlastHit
mtr-MIR7696d-m2Medicago truncatula (Barrel Medic) 4.0chr6:14311311-14311398+2410.28UAUGAGAACUUGAAGCAUACUsiRNA21miRBase21-BestBlastHit
mtr-MIR7696c-m2Medicago truncatula (Barrel Medic) 4.0chr6:14311312-14311397+2380.28UAUGAGAACUUGAAGCAUACUsiRNA21miRBase21-BestBlastHit
mtr-MIR5256-m1Medicago truncatula (Barrel Medic) 4.0chr6:16702193-16702314.200.02UUAAUGGAUUAUGUAAGAUUAmiR5256siRNA21miRBase21-BestBlastHit
mtr-MIR5222-m1Medicago truncatula (Barrel Medic) 4.0chr6:18873819-18873924.4,9575.75UUACAGGAGAAGAAUGUAUGGmiR5222siRNA21miRBase21-BestBlastHit
mtr-MIR5253-m1Medicago truncatula (Barrel Medic) 4.0chr6:20806662-20806900+96,890112.43GAUGAAAAUGAUUAUGUUGGAmiR5253siRNA21miRBase21-BestBlastHit
mtr-MIR2679c-m1Medicago truncatula (Barrel Medic) 4.0chr6:22026700-22026818+22,90926.58CUCUUGUAGAAAGAUGGCGGUsiRNA21miRBase21-BestBlastHit
mtr-MIR5255-m1Medicago truncatula (Barrel Medic) 4.0chr6:26624773-26624860.300.04UGAUUCUUGUCGGACGAUUGCsiRNA21miRBase21-BestBlastHit
mtr-MIR5255-m2Medicago truncatula (Barrel Medic) 4.0chr6:26730750-26730837.360.04UGAUUCUUGUCGGACGAUUGCsiRNA21miRBase21-BestBlastHit
mtr-MIR2674-m1Medicago truncatula (Barrel Medic) 4.0chr6:29727846-29728139.6750.78AGCAAUUAGAAGCUCUGGCUGsiRNA21miRBase21-BestBlastHit
mtr-MIR2678-m1Medicago truncatula (Barrel Medic) 4.0chr6:31566324-31566752.7,2008.35UUGCUCGAAGAAGCUCAGGCCmiR2678siRNA21miRBase21-BestBlastHit
mtr-MIR5241c-m1Medicago truncatula (Barrel Medic) 4.0chr6:33389545-33389662.4,2824.97UGUGACUGAAUGGAAGAGUGCmiR5241siRNA21miRBase21-BestBlastHit
mtr-MIR5241b-m1Medicago truncatula (Barrel Medic) 4.0chr6:33402112-33402178.7100.82UGUUCGGUCGUAAUGUGACUGmiR5241siRNA21miRBase21-BestBlastHit
mtr-MIR5237-m1Medicago truncatula (Barrel Medic) 4.0chr6:33412102-33412285-3,4694.03UUUCAAAAGAUUUAGUUGGGAmiR5237siRNA21miRBase21-BestBlastHit
mtr-MIR2610b-m1Medicago truncatula (Barrel Medic) 4.0chr7:2555122-2555533+70.01UAAGAUUGAGACUUGUAUGGCsiRNA21miRBase21-BestBlastHit
mtr-MIR5230-m1Medicago truncatula (Barrel Medic) 4.0chr7:6573261-6573404.10,21211.85CUGAUAUGUGGCAUGUAUCGAsiRNA21miRBase21-BestBlastHit
mtr-MIR171a-m1Medicago truncatula (Barrel Medic) 4.0chr7:9888230-9888343.1,4831.72UGAUUGAGUCGUGCCAAUAUCmiR171siRNA21miRBase21-BestBlastHit
mtr-MIR2595-m1Medicago truncatula (Barrel Medic) 4.0chr7:13747543-13747682+3,3393.87UACAUUUUCUUCUUUAUGUCUmiR2595siRNA21miRBase21-BestBlastHit
mtr-MIR2111f-m1Medicago truncatula (Barrel Medic) 4.0chr7:23600096-23600211-6720.78AGCCUUGGAGUGCAGAUUAUCmiR2111siRNA21miRBase21-BestBlastHit
mtr-MIR5257-m1Medicago truncatula (Barrel Medic) 4.0chr7:29571862-29571994.130.02UGAGUAUAAGUAGGAAUGAUUmiR5257siRNA21miRBase21-BestBlastHit
mtr-MIR5258-m1Medicago truncatula (Barrel Medic) 4.0chr7:29837183-29837292.22,48926.10AGAAGUGGAAUGCAAUUCUGAsiRNA21miRBase21-BestBlastHit
mtr-MIR5037a-m1Medicago truncatula (Barrel Medic) 4.0chr7:31441423-31441509.4,5025.22AACCCUCAAAGGCUUCCACGGmiR5037siRNA21miRBase21-BestBlastHit
mtr-MIR5741d-m1Medicago truncatula (Barrel Medic) 4.0chr7:39405903-39406136+260.03UUUUAGGGACUAAAUUGAUGGmiR5741siRNA21miRBase21-BestBlastHit
mtr-MIR2199-m1Medicago truncatula (Barrel Medic) 4.0chr8:2121867-2122370+95,437110.74UGAUACACUAGCACGGAUCACmiR2199siRNA21miRBase21-BestBlastHit
mtr-MIR5238-m1Medicago truncatula (Barrel Medic) 4.0chr8:25383846-25383935+5,4016.27UGUAGAAAAAACAAAGGGCAAmiR5238siRNA21miRBase21-BestBlastHit
mtr-MIR5260-m1Medicago truncatula (Barrel Medic) 4.0chr8:30411546-30411643-474,981551.14UUUGUAUUGUUGACAUGGCUUmiR5260siRNA21miRBase21-BestBlastHit
mtr-MIR5215-m1Medicago truncatula (Barrel Medic) 4.0chr8:30411728-30411813-775,446899.78AGGAGGAUGAGCUACCUGCUUmiR5215siRNA21miRBase21-BestBlastHit
mtr-MIR171d-m1Medicago truncatula (Barrel Medic) 4.0chr8:31599256-31599360-4,4085.12UUGAGCCGUGCCAAUAUCUCAmiR171siRNA21miRBase21-BestBlastHit
mtr-MIR5741e-m1Medicago truncatula (Barrel Medic) 4.0chr8:35464672-35464918-830.10UAGGGACUAAAUUGAUGGUUUmiR5741siRNA21miRBase21-BestBlastHit
mtr-MIR5246-m1Medicago truncatula (Barrel Medic) 4.0chr8:35984055-35984124+8761.02UUGCAGACAGCUUUGAAGGUUmiR5246siRNA21miRBase21-BestBlastHit
mtr-MIR399a-m1Medicago truncatula (Barrel Medic) 4.0chr8:36008457-36008590.1040.12UGCCAAAGGAGAUUUGCCCAGmiR399siRNA21miRBase21-BestBlastHit
mtr-MIR399s-m1Medicago truncatula (Barrel Medic) 4.0chr8:36008461-36008583.1040.12UGCCAAAGGAGAUUUGCCCAGmiR399siRNA21miRBase21-BestBlastHit
mtr-MIR399t-m1Medicago truncatula (Barrel Medic) 4.0chr8:36008461-36008583.1040.12UGCCAAAGGAGAUUUGCCCAGmiR399siRNA21miRBase21-BestBlastHit
mtr-MIR5235a-m2Medicago truncatula (Barrel Medic) 4.0scaffold0005:178461-178544+7870.91AUAAGGUCAAUGAUUGGCGUGmiR5235siRNA21miRBase21-BestBlastHit
mtr-MIR5235b-m2Medicago truncatula (Barrel Medic) 4.0scaffold0005:178461-178544+7870.91AUAAGGUCAAUGAUUGGCGUGmiR5235siRNA21miRBase21-BestBlastHit
mtr-MIR5236a-m1Medicago truncatula (Barrel Medic) 4.0scaffold0021:48481-48595-63,93374.18UGAAUUUCGGGCAGAUUUGGUmiR5236siRNA21miRBase21-BestBlastHit
mtr-MIR5236b-m1Medicago truncatula (Barrel Medic) 4.0scaffold0021:48481-48595-63,93374.18UGAAUUUCGGGCAGAUUUGGUmiR5236siRNA21miRBase21-BestBlastHit
mtr-MIR5236c-m1Medicago truncatula (Barrel Medic) 4.0scaffold0021:48481-48595-63,93374.18UGAAUUUCGGGCAGAUUUGGUmiR5236siRNA21miRBase21-BestBlastHit
mtr-MIR5236d-m1Medicago truncatula (Barrel Medic) 4.0scaffold0021:48481-48595-63,93374.18UGAAUUUCGGGCAGAUUUGGUmiR5236siRNA21miRBase21-BestBlastHit
mtr-MIR5236e-m1Medicago truncatula (Barrel Medic) 4.0scaffold0021:48481-48595-63,93374.18UGAAUUUCGGGCAGAUUUGGUmiR5236siRNA21miRBase21-BestBlastHit
mtr-MIR5562-m1Medicago truncatula (Barrel Medic) 4.0scaffold0534:8403-8626+1080.13UUUGAGAAUUGGAAUUUGUUCmiR5562siRNA21miRBase21-BestBlastHit