Data from Lunardon et al. (2020)

Annotations viewer

Genome

Medicago truncatula (Barrel Medic) genome build 4.0 (mtr-b4.0)

Version v4.0 of Medicago truncatula cv. A17 from Phytozome

Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
mtr-MIR2592aw-m1	Medicago truncatula (Barrel Medic) 4.0	chr1:13635005-13635237	-	125	0.15	CAACAGGACUCGAGCAUUUCG	miR2592	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR5232-m1	Medicago truncatula (Barrel Medic) 4.0	chr1:23165257-23165349	-	291,726	338.50	ACAUGUCGCUCUCACCUGAAG	miR5232	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR2593b-m1	Medicago truncatula (Barrel Medic) 4.0	chr1:33939310-33939424	-	1,343	1.56	AAAUGAAUGAACCUAGAAUAU	miR2593	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR2593c-m1	Medicago truncatula (Barrel Medic) 4.0	chr1:33939310-33939424	-	1,343	1.56	AAAUGAAUGAACCUAGAAUAU	miR2593	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR160b-m1	Medicago truncatula (Barrel Medic) 4.0	chr1:42904607-42904697	-	5,404	6.27	GCGUAUGAGGAGCCAAGCAUA	miR160	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR160e-m1	Medicago truncatula (Barrel Medic) 4.0	chr1:42904607-42904697	-	5,404	6.27	GCGUAUGAGGAGCCAAGCAUA	miR160	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR319c-m1	Medicago truncatula (Barrel Medic) 4.0	chr2:23229815-23229903	-	76,725	89.03	UUGGACUGAAGGGAGCUCCC	miR319	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR2593b-m2	Medicago truncatula (Barrel Medic) 4.0	chr2:26234037-26234151	-	72	0.08	AAAUGAAUGAACCUAGAAUAU	miR2593	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR2593c-m2	Medicago truncatula (Barrel Medic) 4.0	chr2:26234037-26234151	-	72	0.08	AAAUGAAUGAACCUAGAAUAU	miR2593	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR2593b-m3	Medicago truncatula (Barrel Medic) 4.0	chr3:38677578-38677692	+	35	0.04	AAAUGAAUGAACCUAGAAUAU	miR2593	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR2593c-m3	Medicago truncatula (Barrel Medic) 4.0	chr3:38677578-38677692	+	35	0.04	AAAUGAAUGAACCUAGAAUAU	miR2593	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR166c-m1	Medicago truncatula (Barrel Medic) 4.0	chr3:44456239-44456343	-	63,151	73.28	UCUCGGACCAGGCUUCAUUCC	miR166	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR2592f-m1	Medicago truncatula (Barrel Medic) 4.0	chr3:49139748-49140005	-	25	0.03	GGGAAAACAUGAAGUGUUUGGC	miR2592	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR2592o-m1	Medicago truncatula (Barrel Medic) 4.0	chr4:41794258-41794515	-	41	0.05	CAAGCACCUCAUGUUUCUCCUU	miR2592	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR2592az-m1	Medicago truncatula (Barrel Medic) 4.0	chr5:11346974-11347206	+	347	0.40	GGAAAACAUGAAUGUCGGGUG	miR2592	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR395m-m1	Medicago truncatula (Barrel Medic) 4.0	chr5:17002658-17002757	-	6	0.01	UGAAGUGUUUGGGGGAACUCU	miR395	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR395l-m2	Medicago truncatula (Barrel Medic) 4.0	chr5:17017871-17017971	-	42	0.05	UGAAGUGUUUGGGGGAACUCU	miR395	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR395n-m2	Medicago truncatula (Barrel Medic) 4.0	chr5:17017871-17017971	-	42	0.05	UGAAGUGUUUGGGGGAACUCU	miR395	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR395e-m1	Medicago truncatula (Barrel Medic) 4.0	chr5:17031988-17032087	-	6	0.01	AGUUCCUUUGAACGCUUCAUG	miR395	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR395c-m1	Medicago truncatula (Barrel Medic) 4.0	chr5:17048392-17048488	-	2	0.00	UAUGAAGUGUUUGGGGGAACU	miR395	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR2111l-m1	Medicago truncatula (Barrel Medic) 4.0	chr7:23572691-23572777	-	141	0.16	AUCCUUGGAAUGCAGAUUAUC	miR2111	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR399e-m1	Medicago truncatula (Barrel Medic) 4.0	chr8:36019793-36019926	-	106	0.12	UGCCAAAGGAGAUUUGCCCAG	miR399	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR160b-m2	Medicago truncatula (Barrel Medic) 4.0	scaffold0224:189-279	+	5,494	6.38	GCGUAUGAGGAGCCAAGCAUA	miR160	nearMIRNA	miRBase21-BestBlastHit
mtr-MIR160e-m2	Medicago truncatula (Barrel Medic) 4.0	scaffold0224:189-279	+	5,494	6.38	GCGUAUGAGGAGCCAAGCAUA	miR160	nearMIRNA	miRBase21-BestBlastHit