het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Medicago truncatula (Barrel Medic) genome build 4.0 (mtr-b4.0)

Version v4.0 of Medicago truncatula cv. A17 from Phytozome

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
mtr-MIR5219-m1Medicago truncatula (Barrel Medic) 4.0chr1:16185052-16185135+2200.26UCAUGGAAUCUCAGCUGCUGCAmiR5219OtherRNAmiRBase21-BestBlastHit
mtr-MIR2624-m1Medicago truncatula (Barrel Medic) 4.0chr1:35485786-35485847+1890.22ACACCGCCGGCAACCUmiR2624OtherRNAmiRBase21-BestBlastHit
mtr-MIR2640-m1Medicago truncatula (Barrel Medic) 4.0chr1:52767688-52767977-140.02UGUACUGAAAUUAGUUAGGCmiR2640OtherRNAmiRBase21-BestBlastHit
mtr-MIR5267h-m1Medicago truncatula (Barrel Medic) 4.0chr2:22302073-22302157+20.00AAAAAACAAGUGGGUGUGUUCUAGCAmiR2604OtherRNAmiRBase21-BestBlastHit
mtr-MIR5288-m1Medicago truncatula (Barrel Medic) 4.0chr2:32095678-32095748+2030.24CAGCAUUGAAGAACAUAGGGAUUmiR5288OtherRNAmiRBase21-BestBlastHit
mtr-MIR2592bj-m1Medicago truncatula (Barrel Medic) 4.0chr2:43491742-43491932.5370.62AUUCCCACUGUNCCUGmiR2592OtherRNAmiRBase21-BestBlastHit
mtr-MIR2600e-m1Medicago truncatula (Barrel Medic) 4.0chr3:1801473-1801606.90.01ACAUAGAGUUGGGUGACAUUGGCCOtherRNAmiRBase21-BestBlastHit
mtr-MIR2592bi-m1Medicago truncatula (Barrel Medic) 4.0chr3:51015579-51015769.1200.14AGGACUCCAAUAUACGACCGGCAUOtherRNAmiRBase21-BestBlastHit
mtr-MIR2630p-m1Medicago truncatula (Barrel Medic) 4.0chr4:5721030-5721259.150.02AAAUUGGAUCAUAUUGGAUUUGGUmiR2630OtherRNAmiRBase21-BestBlastHit
mtr-MIR396b-m1Medicago truncatula (Barrel Medic) 4.0chr4:47589557-47589651-1,304,2951,513.42UUCCACAGCUUUCUUGAACUGmiR396OtherRNAmiRBase21-BestBlastHit
mtr-MIR5741c-m1Medicago truncatula (Barrel Medic) 4.0chr5:13638110-13638276.70.01AUCACUGAUUUAUAUGAAAUUCGUCAAUUUAGUCCAmiR5741OtherRNAmiRBase21-BestBlastHit
mtr-MIR2671f-m1Medicago truncatula (Barrel Medic) 4.0chr5:43476097-43476455.380.04UUAAAGGACCAAAACGAAACUmiR2671OtherRNAmiRBase21-BestBlastHit
mtr-MIR2592bc-m2Medicago truncatula (Barrel Medic) 4.0chr6:29108475-29108578+40.01AAGGAAUGAACCUCAUUUCGUUGUmiR2592OtherRNAmiRBase21-BestBlastHit
mtr-MIR5267c-m7Medicago truncatula (Barrel Medic) 4.0chr6:31132960-31133040.30.00AUUUGCUAGAACACACCCACUUGCUmiR2604OtherRNAmiRBase21-BestBlastHit
mtr-MIR5267d-m7Medicago truncatula (Barrel Medic) 4.0chr6:31132960-31133040.30.00AUUUGCUAGAACACACCCACUUGCUmiR2604OtherRNAmiRBase21-BestBlastHit
mtr-MIR5267e-m7Medicago truncatula (Barrel Medic) 4.0chr6:31132960-31133040.30.00AAAAAGCAAGUGGGUGUGUUCUAGmiR2604OtherRNAmiRBase21-BestBlastHit
mtr-MIR156a-m1Medicago truncatula (Barrel Medic) 4.0chr7:15012922-15013381+160.02UGACAGAAGAGAGAGAGCACmiR156OtherRNAmiRBase21-BestBlastHit
mtr-MIR2657-m1Medicago truncatula (Barrel Medic) 4.0chr7:31048585-31048843-50.01AAUUUGGAGAACUGCAAUGmiR2657OtherRNAmiRBase21-BestBlastHit
mtr-MIR5265-m1Medicago truncatula (Barrel Medic) 4.0chr7:41417567-41417676-1,4681.70AAGUGAUGUUGGAAUGGUUAmiR5265OtherRNAmiRBase21-BestBlastHit
mtr-MIR159b-m1Medicago truncatula (Barrel Medic) 4.0chr8:10543018-10543203-47,52255.14AUUGGAGUGAAGGGAGCUCCAmiR159OtherRNAmiRBase21-BestBlastHit
mtr-MIR5266-m1Medicago truncatula (Barrel Medic) 4.0scaffold0052:29781-29857-70.01UGGCUGGGGGACUGUCUGGGmiR5266OtherRNAmiRBase21-BestBlastHit
mtr-MIR5276-m2Medicago truncatula (Barrel Medic) 4.0scaffold0055:3841-3939.30.00AAAAAAAUUGGAAAUGGCACAUCAAGCOtherRNAmiRBase21-BestBlastHit
mtr-MIR2663-m2Medicago truncatula (Barrel Medic) 4.0scaffold0157:31226-31339-20.00UGGUAGUUUUGUGGUmiR159OtherRNAmiRBase21-BestBlastHit