het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Amborella trichopoda (Amborella) genome build 1 (atr-b1)

Version 1.0 genome from Amborella.org along with plastid and mitochondrial genomes

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
mb21_atr-MIR8580Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00003:1980853-1981017.2294.87UGUCUAAAUAGAAUGGAUGGUGUAmiR8580siRNA24miRBase21
mb21_atr-MIR8598Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00007:304230-305640-1,47531.40UUUAGUCAGCACGAUCGGUGGUGCmiR8598siRNA24miRBase21
mb21_atr-MIR8608Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00007:2536778-2537225+2475.26AUUUUUCUACAGAUCAGAUUGACUmiR8608siRNA24miRBase21
mb21_atr-MIR8613Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00007:3482754-3483188+1,35128.76CAUCAAAUUGGAUGACUUGGGAUGmiR8613siRNA24miRBase21
mb21_atr-MIR8553aAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00008:2573268-2573780+1,28827.42AUAUGAAUUUUGAACCACGCGAUGmiR8553siRNA24miRBase21
mb21_atr-MIR8554Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00009:5608266-5608953+2,80559.71UGCGAUGACUUUGGAUCUUGAGGAmiR8554siRNA24miRBase21
mb21_atr-MIR8553bAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00013:3157565-3157975-1,06322.63UGUAUUUUGGACCACCUGAUGAAGmiR8553siRNA24miRBase21
mb21_atr-MIR8557Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00016:725142-725265+1683.58UUGUAACUGUAUGGCCAUUUUAGAmiR8557siRNA24miRBase21
mb21_atr-MIR8617Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00018:135389-135684-70715.05AGUUCAUUUUAGUUGGAUGGUGUAmiR8617siRNA24miRBase21
mb21_atr-MIR8561Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00019:4756003-4756219-6,490138.14AAUGUCACACAUUAAUUAUGGCCUmiR8561siRNA24miRBase21
mb21_atr-MIR8562aAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00020:3302096-3302538-200.43UCGCACGGUCACGAUUGUUCGGUAsiRNA24miRBase21
mb21_atr-MIR8569Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00024:6186109-6186603+11,362241.84ACUGGCAAUCUGGUCGGUCGGACCmiR8569siRNA24miRBase21
mb21_atr-MIR8575Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00029:4695265-4695672+2,41151.32AGAUGUGUCGUGUCUGAAAGGUCAmiR8575siRNA24miRBase21
mb21_atr-MIR8565bAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00033:3597900-3598175-100.21ACACCCAUGGGAGUAGGACCCsiRNA24miRBase21
mb21_atr-MIR8579Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00036:4709046-4709345+80617.16UGCAAUUUUUGUGGACAUAUGCCUmiR8579siRNA24miRBase21
mb21_atr-MIR8552cAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00038:2385712-2386113-1,15524.58GGCCGUGAUCGUCAAAUUGGCUCAmiR8552siRNA24miRBase21
mb21_atr-MIR8583Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00039:3157489-3157787-1,60734.21GCACCACUUGUGACUUAGCUACUGmiR8583siRNA24miRBase21
mb21_atr-MIR8552dAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00042:1550291-1550789+1653.51UCCGUGAUCGUUAGAUCGGCCCAGmiR8552siRNA24miRBase21
mb21_atr-MIR8616Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00049:1238277-1239038+4689.96UCAUCGAUUAUAAAAUUUGUAGCUmiR8616siRNA24miRBase21
mb21_atr-MIR8587Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00049:2701457-2701766-3,08565.67UCCAACUUUUGAACUGCCCAAAAUmiR8587siRNA24miRBase21
mb21_atr-MIR8562bAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00053:1878662-1879096.50.11CAUGCGAUGAUCUUUGGACGGUGAsiRNA24miRBase21
mb21_atr-MIR8590Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00055:4302007-4302363.450.96AUUCCGAUUUGUAGAAAAAAAAAUmiR8590siRNA24miRBase21
mb21_atr-MIR8591Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00056:1307335-1309688-3,53575.24AAGGAUGUAAGCUCGAGGCCGAGCmiR8591siRNA24miRBase21
mb21_atr-MIR8592Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00066:1786946-1787382-1964.17AUCUAAUGAACUCAUCCCGUCAGUmiR8592siRNA24miRBase21
mb21_atr-MIR8593Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00072:189561-190053+2184.64UCUUAGCUUGUCCUAAAAGGCAUGmiR8593siRNA24miRBase21
mb21_atr-MIR8565hAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00076:816642-816928-661.41UUGGCAUAGAUCUUUAGAAAAGUUmiR8565siRNA24miRBase21
mb21_atr-MIR8594Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00081:1136049-1136259-66614.18AAUGGAUAUGUUAAGCAAAUAAAUmiR8594siRNA24miRBase21
mb21_atr-MIR8595Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00086:1853597-1853880+1,02521.82CCCUAGUUGAAGGUCUUGGCCmiR8595siRNA24miRBase21
mb21_atr-MIR8596Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00086:2246834-2247127+1,46331.14AAAUGGAUUUCAAGCUCUAAAAAUmiR8596siRNA24miRBase21
mb21_atr-MIR8597Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00090:2346852-2347146-90319.22UUAGUGGUACACAACUUUGUAACCmiR8597siRNA24miRBase21
mb21_atr-MIR8599Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00099:2088970-2089422+2104.47CCAAAAUGGCUUGAGUUCUAACCUmiR8599siRNA24miRBase21
mb21_atr-MIR8600Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00103:53962-54268+8,896189.35AUCUCAUGUAGAUGACGUCACACCmiR8600siRNA24miRBase21
mb21_atr-MIR8604Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00116:2036317-2036767-85318.16CAUGAAGGACACUUAGUGCAAGAGmiR8604siRNA24miRBase21
mb21_atr-MIR8605Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00135:1278150-1278580-60312.84CACAUUAAUCUCGACCAUUGGAUGmiR8605siRNA24miRBase21
mb21_atr-MIR8609Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00175:147724-148020+1,07622.90ACUAAGAUCCGUGUAGCUAAUCUCmiR8609siRNA24miRBase21
mb21_atr-MIR8610Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00210:197058-197317+3948.39UUCUGACCAAAUUGAAGGAGGmiR8610siRNA24miRBase21
mb21_atr-MIR8612Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold03445:1-805-2,94362.64UGACCACGCGAUGAAAUUUGGACAmiR8612siRNA24miRBase21