het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Amborella trichopoda (Amborella) genome build 1 (atr-b1)

Version 1.0 genome from Amborella.org along with plastid and mitochondrial genomes

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
mb21_atr-MIR390Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00023:136000-136140+2,16246.02UAAAGCUCAGGAGGGAUAGCGmiR390siRNA21miRBase21
mb21_atr-MIR8573Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00029:3790328-3790546-2,38250.70CCGGUCUGGCACAAUGUGUGCmiR8573siRNA21miRBase21
mb21_atr-MIR8578Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00036:3264771-3264860+7,685163.58UAUGAGUGACCUUUGCAAUAGsiRNA21miRBase21
mb21_atr-MIR156aAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00044:4041291-4041476+4,34192.40UUGACAGAAGAUAGAGAGCACmiR156siRNA21miRBase21
mb21_atr-MIR8601Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00103:2041972-2042220+2695.73UGCGAUUAGGUGUUGGAGUUUmiR8601siRNA21miRBase21
mb21_atr-MIR8603Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00116:1378281-1378580+1,71536.50AAGGGGAUGAAUUUUGAGCCUmiR8603siRNA21miRBase21