Data from Lunardon et al. (2020)

Annotations viewer

Genome

Amborella trichopoda (Amborella) genome build 1 (atr-b1)

Version 1.0 genome from Amborella.org along with plastid and mitochondrial genomes

Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
mb21_atr-MIR394	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00001:3120973-3121146	+	1,400	29.80	UUGGCAUUCUGUCCACCUCC	miR394	nearMIRNA	miRBase21
mb21_atr-MIR393	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00009:6768942-6769146	+	144	3.07	UCCAAAGGGAUCGCAUUGAUC	miR393	nearMIRNA	miRBase21
mb21_atr-MIR396b	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00014:2855195-2855343	+	7,507	159.79	UUCCACAGCUUUCUUGAACUU	miR396	nearMIRNA	miRBase21
mb21_atr-MIR8565a	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00025:1560375-1560597	-	4	0.09	AGAUAUCUGUGCCAAAUUUAGUGG	miR8565	nearMIRNA	miRBase21
mb21_atr-MIR156b	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00052:3292164-3292324	-	124	2.64	UGACAGAAGAGAGUGAGCAC	miR156	nearMIRNA	miRBase21
mb21_atr-MIR169c	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00057:2391549-2391730	+	6	0.13	UAGCCAAGAAUGACUUGCCU	miR169	nearMIRNA	miRBase21
mb21_atr-MIR156c	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00061:4133431-4133605	+	1,034	22.01	UUGACAGAAGAUAGAGAGCAC	miR156	nearMIRNA	miRBase21
mb21_atr-MIR8615	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00069:1966180-1966361	-	10,668	227.07	UUUGUGCGUAGAAUCAUACCU	miR8615	nearMIRNA	miRBase21
mb21_atr-MIR319c	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00105:1160459-1160636	+	4,359	92.78	UUGGACUGAAGGGAGCUCCC	miR319	nearMIRNA	miRBase21
mb21_atr-MIR166c	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00128:402019-402162	-	69,645	1,482.41	UCUCGGACCAGGCUUCAUUCC	miR166	nearMIRNA	miRBase21