het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Amborella trichopoda (Amborella) genome build 1 (atr-b1)

Version 1.0 genome from Amborella.org along with plastid and mitochondrial genomes

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
mb21_atr-MIR171aAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00001:2643225-2643370-2,27148.34UGAUUGAGCCGCGCCAAUAUCmiR171MIRNAmiRBase21
mb21_atr-MIR8551Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00002:4164864-4165160+65213.88AUGUUCUAGGUUAGCUCUUGGAUGmiR8551MIRNAmiRBase21
mb21_atr-MIR8560Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00002:6347799-6348098-1,17625.03UCUACUUUAAACACUCAGCCUMIRNAmiRBase21
mb21_atr-MIR166aAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00002:8188982-8189083+160,4793,415.84UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21
mb21_atr-MIR167Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00002:9895576-9895741-2,65956.60UGAAGCUGCCAGCAUGAUCUGmiR167MIRNAmiRBase21
mb21_atr-MIR477Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00003:709668-709849+2034.32AGAGGCCUUAGGGGAGAGUGGmiR477MIRNAmiRBase21
mb21_atr-MIR166bAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00004:1713840-1714006+208,1184,429.85UCUCGGACCAGGCUUCAUUCCmiR166MIRNAmiRBase21
mb21_atr-MIR8588Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00004:6062147-6062392+3,87582.48CCGAGCUCCCAGGGUUAAUGGmiR8588MIRNAmiRBase21
mb21_atr-MIR164aAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00007:3789229-3789353+3,66277.95UGGAGAAGCAGGGCACGUGCAmiR164MIRNAmiRBase21
mb21_atr-MIR8614Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00007:6003383-6003599+3727.92CAAUAGCUAAAGUGAUUGUGACCmiR8614MIRNAmiRBase21
mb21_atr-MIR828Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00009:8165619-8165748+49910.62UGAUACUCAUUUCAGCAAGCAAmiR828MIRNAmiRBase21
mb21_atr-MIR8555Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00011:6531643-6531925+3,59476.50AGUUAACUAGGCAUCUAUAGGAUGmiR8555MIRNAmiRBase21
mb21_atr-MIR168Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00011:8252667-8252896+17,537373.28UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAmiRBase21
mb21_atr-MIR172Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00012:6005508-6005804+982.09GGAAUCUUGAUGAUGCUGCAmiR172MIRNAmiRBase21
mb21_atr-MIR8556Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00013:1587032-1587326+3888.26UAAAAGACAGGAAUUGUAACUmiR8556MIRNAmiRBase21
mb21_atr-MIR397aAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00016:5120337-5120492-3,54475.44UCCUUGAGUGCAGCGUUGAUGmiR397MIRNAmiRBase21
mb21_atr-MIR8558bAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00017:2879753-2880049+25,592544.73UUUCCGAUCCCGCCCAUGCCGUmiR8558MIRNAmiRBase21
mb21_atr-MIR8558aAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00017:2901029-2901189+62,2841,325.73UUUCCGAAUCCGCCUAUACCUGmiR8558MIRNAmiRBase21
mb21_atr-MIR8559Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00017:4559611-4559811-66714.20UGACACUGUAGUAGUCAACCCGUGmiR8559MIRNAmiRBase21
mb21_atr-MIR8565gAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00023:5789125-5789327-3036.45CAUGUGUGUAGGAUUCCAAAUGAUmiR8565MIRNAmiRBase21
mb21_atr-MIR8566Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00024:74289-74584-2976.32AUUAGAGCUGGGUGGAUGAAGUGGmiR8566MIRNAmiRBase21
mb21_atr-MIR8567Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00024:566615-566733+3,96884.46ACAAGAUGCACUAAUUUUAGGACUmiR8567MIRNAmiRBase21
mb21_atr-MIR8568Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00024:4164779-4165014-1,91140.68UGGCUUACUGUGAUCGUUGUCCmiR8568MIRNAmiRBase21
mb21_atr-MIR8572Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00028:4881376-4881622+2,03543.32UGACCCGGUCGUUGGAAUCCUCUCmiR8572MIRNAmiRBase21
mb21_atr-MIR8576Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00029:6178354-6178598-3768.00AGCCAUCAUACUGGAUUUGUCGUAmiR8576MIRNAmiRBase21
mb21_atr-MIR8581Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00037:1871777-1872076-2,58655.04UGAGAGAAUUUUGGUAUGACGACUmiR8581MIRNAmiRBase21
mb21_atr-MIR8582Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00039:1732374-1732503+48810.39UAGGAGUCAUGACGUAGCUUGmiR8582MIRNAmiRBase21
mb21_atr-MIR8584Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00040:69933-70105+1,06522.67UGAACCCUGGUCGUCGCGCUGUGmiR8584MIRNAmiRBase21
mb21_atr-MIR164bAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00045:3520956-3521088-2926.22UGGAGAAGCAGGGCACGUGCAmiR164MIRNAmiRBase21
mb21_atr-MIR396cAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00046:1545633-1545816+6,363135.44UUCCACAGCUUUCUUGAACUUmiR396MIRNAmiRBase21
mb21_atr-MIR8585Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00046:3620895-3621047-7,989170.05UCACAGGAGAGAUGAUACUGGUmiR8585MIRNAmiRBase21
mb21_atr-MIR8586Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00048:2976684-2976839-98620.99UUUUCUCUUAACAACAGAGGAmiR8586MIRNAmiRBase21
mb21_atr-MIR169bAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00057:2389278-2389464-591.26AGCAAGUCGCCUUGGCUAACCmiR169MIRNAmiRBase21
mb21_atr-MIR395Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00060:2574005-2574148+3367.15CUGAAGUGUUUGGGGGAACUCmiR395MIRNAmiRBase21
mb21_atr-MIR171bAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00060:3430268-3430456+2765.88UUGAGCCGUGCCAAUAUCACAmiR171MIRNAmiRBase21
mb21_atr-MIR156dAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00065:3401522-3401718-2,29448.83UGACAGAAGAGAGUGAGCACmiR156MIRNAmiRBase21
mb21_atr-MIR397bAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00072:1231145-1231260+4,18088.97UCAUUGAGUGCAGCGUUGGUGmiR397MIRNAmiRBase21
mb21_atr-MIR319aAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00077:2616711-2616892+1,08923.18UUGGACUGAAGGGAGCUCCCmiR319MIRNAmiRBase21
mb21_atr-MIR535Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00087:73178-73268+5,173110.11UGACAACGAGAGAGAGCACGCmiR535MIRNAmiRBase21
mb21_atr-MIR171cAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00088:670603-670719-54911.69UGAUUGAGCCGCGCCAAUAUCmiR171MIRNAmiRBase21
mb21_atr-MIR396dAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00090:1850377-1850605-3,66377.97CUCCACGGCUUUCUUGAACUUmiR396MIRNAmiRBase21
mb21_atr-MIR160Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00092:1776607-1776790-4539.64UGCCUGGCUCCCUGUAUGCCAmiR160MIRNAmiRBase21
mb21_atr-MIR398Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00102:1169815-1169999+22,581480.64UGUGUUCCCAGGUCGCCCCUGmiR398MIRNAmiRBase21
mb21_atr-MIR159Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00105:1236832-1237130-119,5682,545.04UUUGGAUUGAAGGGAGCUCUAmiR159MIRNAmiRBase21
mb21_atr-MIR8602Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00108:1352014-1352110-11,332241.21UCAGGAGAGAUGAUGCCGGCCmiR8602MIRNAmiRBase21
mb21_atr-MIR166dAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00128:402266-402370-80,9631,723.32UCGGACCAGGCUUCAUUCCCCmiR166MIRNAmiRBase21
mb21_atr-MIR8606Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00140:438128-438355-1894.02UCACCGAUCCGUUUUUUUAAACCUmiR8606MIRNAmiRBase21
mb21_atr-MIR8607Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00161:484165-484344+2,09244.53UUCGUAAUUCUAGAUCUCAGGCUCMIRNAmiRBase21
mb21_atr-MIR2111Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00165:819319-819473+11,818251.55UAAUCUGUAUCUUGAGGUUUGmiR2111MIRNAmiRBase21
mb21_atr-MIR8611Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00413:4554-4653-1533.26UAAGGGCGCUCCGACAACGUGmiR8611MIRNAmiRBase21