het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Physcomitrella patens (Spreading Earthmoss) genome build 3.0 (ppt-b3.0)

Version 3.0 genome build from Phytozome 10 along with plastid and mitochondrial genomes

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
ppt-MIR1220bPhyscomitrella patens (Spreading Earthmoss) 3.0Chr03:8671417-8671621-2641.81UCGGACUCCUCUAUCUCCCUCmiR1220siRNA21miRBase21
ppt-MIR1211Physcomitrella patens (Spreading Earthmoss) 3.0Chr04:8310044-8310155-39,698272.23UGCAUGACCGUCUCUUCCUGCmiR1211siRNA21miRBase21
ppt-MIR1069Physcomitrella patens (Spreading Earthmoss) 3.0Chr05:706260-706503+3432.35CUUAUCAUUGGAUUGAGCACCmiR1069siRNA21miRBase21
ppt-MIR166lPhyscomitrella patens (Spreading Earthmoss) 3.0Chr05:7144693-7144825+64,282440.82CCGGACCAGGCUUCAUUCCCCmiR166siRNA21miRBase21
ppt-MIR1223jPhyscomitrella patens (Spreading Earthmoss) 3.0Chr05:18717592-18717739-3972.72UUGAUUGUAGAGUCAUGCACCmiR1223siRNA21miRBase21
ppt-MIR2079Physcomitrella patens (Spreading Earthmoss) 3.0Chr07:2829022-2829144.1,3529.27AGAGUUGAUGUUGAUGACGCAmiR2079siRNA21miRBase21
ppt-MIR1041Physcomitrella patens (Spreading Earthmoss) 3.0Chr08:3290147-3290288.1,47010.08AGGACCACUCUCACCCGAAAAmiR1041siRNA21miRBase21
ppt-MIR1049Physcomitrella patens (Spreading Earthmoss) 3.0Chr08:4367713-4367851-4,67832.08UCUCUCUUAGCCAAACAGUCUmiR1049siRNA21miRBase21
ppt-MIR2080Physcomitrella patens (Spreading Earthmoss) 3.0Chr09:2064958-2065086.4,76732.69UCUGAAGCGGCAUCUGCGAAUmiR2080siRNA21miRBase21
ppt-MIR1023ePhyscomitrella patens (Spreading Earthmoss) 3.0Chr10:3221227-3221346-80.06ACACUCUCUCCGUUUCCCUUCmiR1023siRNA21miRBase21
ppt-MIR893Physcomitrella patens (Spreading Earthmoss) 3.0Chr10:9627629-9627848-2,79119.14AUUGGGACUUGUGCUGGGACAmiR893siRNA21miRBase21
ppt-MIR1029Physcomitrella patens (Spreading Earthmoss) 3.0Chr10:11607194-11607349-4,19328.75UCUCUCUCAACCAACCAUACUmiR1029siRNA21miRBase21
ppt-MIR2077Physcomitrella patens (Spreading Earthmoss) 3.0Chr13:10758230-10758353.1340.92AAUAUGACGUGUUUAUGAGCUmiR2077siRNA21miRBase21
ppt-MIR2083Physcomitrella patens (Spreading Earthmoss) 3.0Chr13:11433171-11433491+4,26029.21UGUGAGAGAUUGACGAGUGCAmiR899siRNA21miRBase21
ppt-MIR899Physcomitrella patens (Spreading Earthmoss) 3.0Chr13:11433352-11433573+4,29429.45UGUGAGAGAUUGACGAGUGCAmiR899siRNA21miRBase21
ppt-MIR900Physcomitrella patens (Spreading Earthmoss) 3.0Chr13:11882003-11882222.184,7731,267.10CCAGGUACAAGAACACAGCUCmiR900siRNA21miRBase21
ppt-MIR1222bPhyscomitrella patens (Spreading Earthmoss) 3.0Chr15:1335912-1336039-10.01UACCAGUGUAUUCCUUCAAACmiR1222siRNA21miRBase21
ppt-MIR160aPhyscomitrella patens (Spreading Earthmoss) 3.0Chr15:9258342-9258440+1,2308.44GCAUCCAGGGAGCCAGACAGAmiR160siRNA21miRBase21
ppt-MIR1056Physcomitrella patens (Spreading Earthmoss) 3.0Chr17:1953900-1954044-8505.83UUUGCAUCAUAACCCUGGGCUmiR1056siRNA21miRBase21
ppt-MIR166bPhyscomitrella patens (Spreading Earthmoss) 3.0Chr17:3693215-3693317-7,51851.56UCGGACCAGGCUUCAUUCCCCmiR166siRNA21miRBase21
ppt-MIR1034Physcomitrella patens (Spreading Earthmoss) 3.0Chr17:6851462-6851606+9636.60AUUACUUUGGCAGCGCUGUGCmiR1034siRNA21miRBase21
ppt-MIR1074Physcomitrella patens (Spreading Earthmoss) 3.0Chr17:8240339-8240468+3,94527.05CAACACAACGAACAACCCUGAmiR1074siRNA21miRBase21
ppt-MIR2081Physcomitrella patens (Spreading Earthmoss) 3.0Chr18:9091502-9091623.7935.44UCAGACACAUAACUCUAGCUAmiR2081siRNA21miRBase21
ppt-MIR1032Physcomitrella patens (Spreading Earthmoss) 3.0Chr19:443502-443628-7,48951.36CAGGCAAGCCCCUGUCUGGGCmiR1032siRNA21miRBase21
ppt-MIR538aPhyscomitrella patens (Spreading Earthmoss) 3.0Chr19:4360876-4361054-66,829458.29GUUAGAGUGAUGUGGAAACCCmiR538siRNA21miRBase21
ppt-MIR529dPhyscomitrella patens (Spreading Earthmoss) 3.0Chr20:13887655-13887790.1,4039.62AGAAGAGAGAGAGCACAGCCCmiR529siRNA21miRBase21
ppt-MIR1068Physcomitrella patens (Spreading Earthmoss) 3.0Chr22:7773863-7774066-4693.22UGAAGGUCAACUCAGACGGGUmiR1068siRNA21miRBase21
ppt-MIR1063ePhyscomitrella patens (Spreading Earthmoss) 3.0Chr22:9283849-9284084+5683.90GAUGCAGAACUGCAAGAAGCmiR1063siRNA21miRBase21
ppt-MIR529ePhyscomitrella patens (Spreading Earthmoss) 3.0Chr23:8765009-8765130.3062.10AGAAGAGAGAGAGCACAGCCCmiR529siRNA21miRBase21
ppt-MIR529fPhyscomitrella patens (Spreading Earthmoss) 3.0Chr24:1643882-1644003.2811.93AGAAGAGAGAGAGCACAGCCCmiR529siRNA21miRBase21
ppt-MIR1077Physcomitrella patens (Spreading Earthmoss) 3.0Chr24:4035188-4035339+2,15714.79AGGGAUGGACGUAUACGAGCCmiR1077siRNA21miRBase21
ppt-MIR166hPhyscomitrella patens (Spreading Earthmoss) 3.0Chr27:682285-682410-2,29715.75UCGGACCAGGCUUCAUUCCCCmiR166siRNA21miRBase21
ppt-MIR1066Physcomitrella patens (Spreading Earthmoss) 3.0Chr27:2751812-2751930.2,71418.61CGUACCCCGCUCAGUAACAUGmiR1066siRNA21miRBase21