het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Physcomitrella patens (Spreading Earthmoss) genome build 3.0 (ppt-b3.0)

Version 3.0 genome build from Phytozome 10 along with plastid and mitochondrial genomes

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
ppt-MIR1024aPhyscomitrella patens (Spreading Earthmoss) 3.0Chr01:15203931-15204092-27,635189.51UCUGGUUGGAUUGUAGGCCUmiR1024nearMIRNAmiRBase21
ppt-MIR1024bPhyscomitrella patens (Spreading Earthmoss) 3.0Chr02:12910626-12910749-294,2112,017.58UCUGGUUGGAUUGUAGGCCUmiR1024nearMIRNAmiRBase21
ppt-MIR1078Physcomitrella patens (Spreading Earthmoss) 3.0Chr06:18848953-18849063+4,10828.17UUUGGAUGAUUCAAUUGUGAUmiR1078nearMIRNAmiRBase21
ppt-MIR1222ePhyscomitrella patens (Spreading Earthmoss) 3.0Chr10:12476527-12476655+80.06UGCUGGUGAGCUCCUUCAAGCmiR1222nearMIRNAmiRBase21
ppt-MIR902ePhyscomitrella patens (Spreading Earthmoss) 3.0Chr11:9177888-9178020+6,86647.08ACGAAGGUCUGCAUCAUAGUmiR902nearMIRNAmiRBase21
ppt-MIR1051Physcomitrella patens (Spreading Earthmoss) 3.0Chr12:5498625-5498821+1941.33UUCCUGUCUACUUGAAGCCACmiR1051nearMIRNAmiRBase21
ppt-MIR536aPhyscomitrella patens (Spreading Earthmoss) 3.0Chr12:5501130-5501328-369,0052,530.49UCGUGCCAAGCUGUGUGCAACCmiR536nearMIRNAmiRBase21
ppt-MIR1025Physcomitrella patens (Spreading Earthmoss) 3.0Chr13:4841439-4841648+87,664601.17UUUUAGUUUUGUUGUGGGCUmiR1025nearMIRNAmiRBase21
ppt-MIR1075Physcomitrella patens (Spreading Earthmoss) 3.0Chr13:8730372-8730513-2681.84UGUUUCAGUCAUGGUUUCUACmiR1075nearMIRNAmiRBase21
ppt-MIR898bPhyscomitrella patens (Spreading Earthmoss) 3.0Chr14:2423834-2424053+10,24770.27UUGCUGUGCACUACUUAGUACGmiR898nearMIRNAmiRBase21
ppt-MIR1223dPhyscomitrella patens (Spreading Earthmoss) 3.0Chr16:14296041-14296174+490.34UUGUAGAGUCAUACACCUCUGmiR1223nearMIRNAmiRBase21
ppt-MIR1064Physcomitrella patens (Spreading Earthmoss) 3.0Chr17:6870862-6870976-880.60CAUUCUGAGAAUAAUCAUCCGAmiR1064nearMIRNAmiRBase21
ppt-MIR902iPhyscomitrella patens (Spreading Earthmoss) 3.0Chr21:5057311-5057430+190.13UUAUGAUGUAGAUUCUUCAUCmiR902nearMIRNAmiRBase21
ppt-MIR902cPhyscomitrella patens (Spreading Earthmoss) 3.0Chr21:13954620-13954753-50,977349.58ACGAAGGUCUGCAUCAUAGUmiR902nearMIRNAmiRBase21