het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Setaria italica (Foxtail Millet) genome build 2 (sit-b2)

Version v2 of Setaria italica cv. Yugu1 from Phytozome

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
sit-b2r1-416Setaria italica (Foxtail Millet) 2scaffold_1:4054340-4054457.970.78UUAAAACGACCUAUAAUUUGsiRNA20ShortStack
sit-b2r1-611Setaria italica (Foxtail Millet) 2scaffold_1:5901869-5902228+249,1602,014.14UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
sit-b2r1-1025Setaria italica (Foxtail Millet) 2scaffold_1:9655961-9656462+16,920136.78GGGGAUGUAGCUCAGAUGGUsiRNA20ShortStack
sit-b2r1-7742Setaria italica (Foxtail Millet) 2scaffold_3:4905274-4905686+2,55020.61UGAAGUGUUUGGGGGAACUCmiR395siRNA20ShortStack
sit-b2r1-10238Setaria italica (Foxtail Millet) 2scaffold_3:44462574-44462593-7776.28CAUCUAUUUGAGUGUUGGUUsiRNA20ShortStack
sit-b2r1-10339Setaria italica (Foxtail Millet) 2scaffold_3:45754853-45755004-1,87615.17GGGCCCCACGGUGGGCGCCAsiRNA20ShortStack
sit-b2r1-11549Setaria italica (Foxtail Millet) 2scaffold_4:6272567-6272605+29,491238.40GUUCCCCAGCGGAGUCGCCAmiR5072siRNA20ShortStack
sit-b2r1-13631Setaria italica (Foxtail Millet) 2scaffold_5:87578-87597-2882.33UCCCAAAUGUAGACAAAGCAmiR158siRNA20ShortStack
sit-b2r1-14745Setaria italica (Foxtail Millet) 2scaffold_5:11531647-11532265+192,8651,559.07UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
sit-b2r1-14847Setaria italica (Foxtail Millet) 2scaffold_5:12762242-12762261-1951.58CUGCACUGCCUCUUCUUGGCsiRNA20ShortStack
sit-b2r1-14911Setaria italica (Foxtail Millet) 2scaffold_5:13582368-13582387-2441.97UCGGACCAGGCUCAUUCCCCsiRNA20ShortStack
sit-b2r1-16632Setaria italica (Foxtail Millet) 2scaffold_5:38362244-38362681+31,454254.27GGCGGAUGUAGCCAAGUGGAsiRNA20ShortStack
sit-b2r1-17310Setaria italica (Foxtail Millet) 2scaffold_5:45152500-45152637+9527.70UUGGCAUUCUGUCCACCUCCmiR394siRNA20ShortStack
sit-b2r1-18817Setaria italica (Foxtail Millet) 2scaffold_6:24038739-24038866+6134.96GGGUCCCACCGAGCGUGCCAsiRNA20ShortStack
sit-b2r1-22225Setaria italica (Foxtail Millet) 2scaffold_7:31237605-31238608+16,717135.14UGAAGUGUUUGGGGGAACUCmiR395siRNA20ShortStack
sit-b2r1-22911Setaria italica (Foxtail Millet) 2scaffold_8:1958054-1958161+1361.10UCGUCCCACUGGGCGUGCCAsiRNA20ShortStack
sit-b2r1-22922Setaria italica (Foxtail Millet) 2scaffold_8:2068993-2069023-5,28942.76GGGGAUGUAGCUCAGAUGGUsiRNA20ShortStack
sit-b2r1-23597Setaria italica (Foxtail Millet) 2scaffold_8:12616556-12616575+5804.69GUGCCGAAGCUGCGGAUGUAsiRNA20ShortStack
sit-b2r1-29740Setaria italica (Foxtail Millet) 2scaffold_9:58356647-58356774-1,69013.66GCUGGAAUAGCUCAGUUGGCsiRNA20ShortStack