het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Brachypodium distachyon (Stiff brome) genome build 1.0 (bdi-b1.0)

Version v1.0 of Brachypodium distachyon cv. Bd21 from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bdi-b1.0r1-293Brachypodium distachyon (Stiff brome) 1.01:1310513-1310627+3571.02CGACAAGAAUUUAGGGACGGAnearMIRNAShortStack
bdi-b1.0r1-566Brachypodium distachyon (Stiff brome) 1.01:2519346-2519453-6371.82CAAGAAUUAUUGGACAGAGGGnearMIRNAShortStack
bdi-b1.0r1-591Brachypodium distachyon (Stiff brome) 1.01:2643346-2643390+4591.31CGGAGGGAGAGGAUGAUGAAGCmiR9494nearMIRNAShortStack
bdi-b1.0r1-977Brachypodium distachyon (Stiff brome) 1.01:4277799-4277929-3250.93UGGACCGCACGUCGUAGAUCCnearMIRNAShortStack
bdi-b1.0r1-978Brachypodium distachyon (Stiff brome) 1.01:4277960-4278066-3941.13UGCAGUGCAGAUCAAAGGUGGnearMIRNAShortStack
bdi-b1.0r1-1761Brachypodium distachyon (Stiff brome) 1.01:7419709-7419941-3,3529.58UUCUUGAAAAAAGAAGAAGAUCGGnearMIRNAShortStack
bdi-b1.0r1-1924Brachypodium distachyon (Stiff brome) 1.01:7990458-7990650-5261.50ACAAAGUUGUACUAAUGAAUCGGCnearMIRNAShortStack
bdi-b1.0r1-2078Brachypodium distachyon (Stiff brome) 1.01:8703248-8703270+1340.38AGAGGUGGCUGACAGAGUCAAnearMIRNAShortStack
bdi-b1.0r1-2768Brachypodium distachyon (Stiff brome) 1.01:11347049-11347072-2890.83UAGCCAAGGAUGACUUGCCUAmiR169nearMIRNAShortStack
bdi-b1.0r1-2989Brachypodium distachyon (Stiff brome) 1.01:12164735-12165017+5,05214.43UCCGGACAAACUUUGAGUGGCnearMIRNAShortStack
bdi-b1.0r1-3544Brachypodium distachyon (Stiff brome) 1.01:14544165-14544202+1,3994.00UGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAShortStack
bdi-b1.0r1-3689Brachypodium distachyon (Stiff brome) 1.01:15172870-15172949-2740.78AAAUGGUUGUUUGGUACGAAGAGUnearMIRNAShortStack
bdi-b1.0r1-3743Brachypodium distachyon (Stiff brome) 1.01:15386640-15386669+5131.47CAGUGACAAGAAUUUAGGAACmiR5175nearMIRNAShortStack
bdi-b1.0r1-3932Brachypodium distachyon (Stiff brome) 1.01:16209628-16209750-3140.90UAAGAAUUAUGAAACGGAGGGAGCnearMIRNAShortStack
bdi-b1.0r1-4213Brachypodium distachyon (Stiff brome) 1.01:17489213-17489310-4671.33CAAGACAAGACUUUGACCAAGnearMIRNAShortStack
bdi-b1.0r1-5301Brachypodium distachyon (Stiff brome) 1.01:21583795-21583828+3581.02UGCGACACUUAUUACCGAACGGAGnearMIRNAShortStack
bdi-b1.0r1-5473Brachypodium distachyon (Stiff brome) 1.01:22204335-22204374+1,5164.33UGAGCAAGGGAGAAGACAUGGmiR7753nearMIRNAShortStack
bdi-b1.0r1-6446Brachypodium distachyon (Stiff brome) 1.01:26264505-26264709+5861.67GAGACAUCUUUCGUUGGACGGAGUnearMIRNAShortStack
bdi-b1.0r1-6867Brachypodium distachyon (Stiff brome) 1.01:28034612-28034751+4811.37GAGACAUCUUUCGUUGGACGGAGGnearMIRNAShortStack
bdi-b1.0r1-7036Brachypodium distachyon (Stiff brome) 1.01:28559293-28559386+3551.01AGAUAUUUGAAAGUUUGACUGAUUnearMIRNAShortStack
bdi-b1.0r1-7598Brachypodium distachyon (Stiff brome) 1.01:30824612-30824735-8,05223.00UGAUUGAGCCGUGCCAAUAUCmiR171nearMIRNAShortStack
bdi-b1.0r1-7835Brachypodium distachyon (Stiff brome) 1.01:31914028-31914106+4071.16UGAGUUUUGCAUGGAUGUAGAnearMIRNAShortStack
bdi-b1.0r1-9474Brachypodium distachyon (Stiff brome) 1.01:40188749-40188954+8052.30GUUAAAUUGUGAUCUUGGGAUGCGnearMIRNAShortStack
bdi-b1.0r1-9596Brachypodium distachyon (Stiff brome) 1.01:40702622-40702809+5691.63ACCGGACUGGAGCACGGAAACGGCnearMIRNAShortStack
bdi-b1.0r1-10520Brachypodium distachyon (Stiff brome) 1.01:44301599-44301624+2,6457.56UUGAGAUUAAACUUUGACCAUnearMIRNAShortStack
bdi-b1.0r1-11300Brachypodium distachyon (Stiff brome) 1.01:47483433-47483519+7,33420.95UGUAGAUACUCCCUAAGGCUUmiR5200nearMIRNAShortStack
bdi-b1.0r1-11668Brachypodium distachyon (Stiff brome) 1.01:48976135-48976254+4631.32UUUGUUAGUCUAACUGAUGGCnearMIRNAShortStack
bdi-b1.0r1-11703Brachypodium distachyon (Stiff brome) 1.01:49099721-49099970+5361.53CACUUAUCAUGGAUCGAAAGAGGCnearMIRNAShortStack
bdi-b1.0r1-12169Brachypodium distachyon (Stiff brome) 1.01:50788251-50788333+2560.73ACUUAUAUUGGGACGGAGAGAnearMIRNAShortStack
bdi-b1.0r1-12225Brachypodium distachyon (Stiff brome) 1.01:51020089-51020304+8472.42AAGAAUUAUGGGACGGAGGGUnearMIRNAShortStack
bdi-b1.0r1-13054Brachypodium distachyon (Stiff brome) 1.01:54175346-54175388-3400.97UUACGUAGCUGAGUGCAGAAGUnearMIRNAShortStack
bdi-b1.0r1-13085Brachypodium distachyon (Stiff brome) 1.01:54263889-54264120-4,71513.47GAGACAUCUUUCGUUGGACGGAGUnearMIRNAShortStack
bdi-b1.0r1-13793Brachypodium distachyon (Stiff brome) 1.01:57219092-57219319-1,0032.87UUUGAACUAAAACAACGGAAGAAUnearMIRNAShortStack
bdi-b1.0r1-13801Brachypodium distachyon (Stiff brome) 1.01:57253894-57253917+210.06UGGGGCCGAUGUACGAAGGAnearMIRNAShortStack
bdi-b1.0r1-13909Brachypodium distachyon (Stiff brome) 1.01:57648740-57648787+4811.37UAUAUAUGGGAACAGAGGUAGnearMIRNAShortStack
bdi-b1.0r1-15452Brachypodium distachyon (Stiff brome) 1.01:63540931-63541040+5251.50GAGACAUCCUUGUUGGACUGAGGAnearMIRNAShortStack
bdi-b1.0r1-15567Brachypodium distachyon (Stiff brome) 1.01:63969400-63969571-8122.32AUAAGUGACUCGGAUUUGACUAGAnearMIRNAShortStack
bdi-b1.0r1-16667Brachypodium distachyon (Stiff brome) 1.01:68519187-68519216+5071.45CAUGUCGAGAUUCAACUUUGAnearMIRNAShortStack
bdi-b1.0r1-16952Brachypodium distachyon (Stiff brome) 1.01:69735749-69735795+3761.07CAGACACUUGUUAUGGAUCAGnearMIRNAShortStack
bdi-b1.0r1-17306Brachypodium distachyon (Stiff brome) 1.01:71460094-71460120-730.21ACUUAAUUUGGGACGGAGGGAmiR1862nearMIRNAShortStack
bdi-b1.0r1-19129Brachypodium distachyon (Stiff brome) 1.02:4611916-4612082+1,5984.57CGAGAAUUAUGAAACGGAGGAAGCnearMIRNAShortStack
bdi-b1.0r1-20013Brachypodium distachyon (Stiff brome) 1.02:7995013-7995215+1,7074.88UAUGGGACGGACGGAUGUUGAnearMIRNAShortStack
bdi-b1.0r1-21272Brachypodium distachyon (Stiff brome) 1.02:12857453-12857572-2800.80UUAAGAUCGGAGGAAGUAAUUAGCnearMIRNAShortStack
bdi-b1.0r1-21433Brachypodium distachyon (Stiff brome) 1.02:13623344-13623633+2,9608.46AUUGAGACAAGAAUUAUGAAACGGnearMIRNAShortStack
bdi-b1.0r1-24127Brachypodium distachyon (Stiff brome) 1.02:24262746-24262769+2060.59UUGAGACAAGAAUUAUGGAACGGGnearMIRNAShortStack
bdi-b1.0r1-24683Brachypodium distachyon (Stiff brome) 1.02:26809068-26809093-1,2923.69UGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAShortStack
bdi-b1.0r1-24785Brachypodium distachyon (Stiff brome) 1.02:27258426-27258446+1260.36UCUGUUUCAGAUUAUAAGACGnearMIRNAShortStack
bdi-b1.0r1-25523Brachypodium distachyon (Stiff brome) 1.02:32471148-32471383-9822.81AAUGGAUAAGUUUAGAUCUGACGCnearMIRNAShortStack
bdi-b1.0r1-25789Brachypodium distachyon (Stiff brome) 1.02:33549881-33550053-1,0753.07AGAUCCAGUGGAACCGAACACGGCnearMIRNAShortStack
bdi-b1.0r1-26756Brachypodium distachyon (Stiff brome) 1.02:37271987-37272224+1,9895.68UUUGAACUAAAACGACGACAAnearMIRNAShortStack
bdi-b1.0r1-27793Brachypodium distachyon (Stiff brome) 1.02:41890858-41890972+3901.11ACAGAUCAGAUGAAAGGUGUAnearMIRNAShortStack
bdi-b1.0r1-29879Brachypodium distachyon (Stiff brome) 1.02:50001154-50001313-4,22212.06UUAUGGAUUGAAGGGAGUACAnearMIRNAShortStack
bdi-b1.0r1-30967Brachypodium distachyon (Stiff brome) 1.02:54635582-54635649-3541.01GAGACAUCCUUUGUUGGACUGAGGnearMIRNAShortStack
bdi-b1.0r1-31021Brachypodium distachyon (Stiff brome) 1.02:54813223-54813270-2700.77UAGAGUUGGCAAAGUAGCAUUGGCnearMIRNAShortStack
bdi-b1.0r1-31519Brachypodium distachyon (Stiff brome) 1.02:57339458-57339480+1980.57UAUUGGUCUAAUGGUUGGUCAnearMIRNAShortStack
bdi-b1.0r1-32317Brachypodium distachyon (Stiff brome) 1.03:1731279-1731299-830.24UUGCUUGGUGCAGAUCGGGGCnearMIRNAShortStack
bdi-b1.0r1-32325Brachypodium distachyon (Stiff brome) 1.03:1747937-1748043-9162.62CUGGUUGGGCUUAGAUGGGUCCmiR9496nearMIRNAShortStack
bdi-b1.0r1-32785Brachypodium distachyon (Stiff brome) 1.03:3632552-3632586-2,3346.67UGAAGCUGCCAGCAUGAUCUGAmiR167nearMIRNAShortStack
bdi-b1.0r1-33017Brachypodium distachyon (Stiff brome) 1.03:4554888-4555168-1,0933.12AUUUGGACAAGAAUUACGAAACGGnearMIRNAShortStack
bdi-b1.0r1-34829Brachypodium distachyon (Stiff brome) 1.03:12514146-12514166+620.18AGAUUUGGAUGGAACCAAAUCmiR2275nearMIRNAShortStack
bdi-b1.0r1-35107Brachypodium distachyon (Stiff brome) 1.03:13589360-13589548-9852.81CAUGGUCUUCGGUUCACGGCUnearMIRNAShortStack
bdi-b1.0r1-36500Brachypodium distachyon (Stiff brome) 1.03:18832232-18832252-1290.37UUGGUAUUGUAUUUGUUGAUAnearMIRNAShortStack
bdi-b1.0r1-36790Brachypodium distachyon (Stiff brome) 1.03:19937214-19937497-1,0883.11UUAGGAAUUAGCUCAAUUUGGACAnearMIRNAShortStack
bdi-b1.0r1-37399Brachypodium distachyon (Stiff brome) 1.03:22421140-22421244-1610.46UGCAAAAAUCUGACCUGAGCUnearMIRNAShortStack
bdi-b1.0r1-37600Brachypodium distachyon (Stiff brome) 1.03:23609430-23609677-2,0935.98UGAGAUCUAAUGUGUAGGAUUnearMIRNAShortStack
bdi-b1.0r1-37667Brachypodium distachyon (Stiff brome) 1.03:24423617-24423759-3901.11CUAAGACAAGGCUUUGACCACnearMIRNAShortStack
bdi-b1.0r1-38385Brachypodium distachyon (Stiff brome) 1.03:28696069-28696136-3190.91GAGAAAUCCUUUGUUGGACGGAGGnearMIRNAShortStack
bdi-b1.0r1-38400Brachypodium distachyon (Stiff brome) 1.03:28731094-28731330-7,39921.14GAGACAUCUUUCGUUGGACGGAGGnearMIRNAShortStack
bdi-b1.0r1-39110Brachypodium distachyon (Stiff brome) 1.03:31556097-31556285+6381.82ACCGGACUGGAGCACGGAAACGGCnearMIRNAShortStack
bdi-b1.0r1-40115Brachypodium distachyon (Stiff brome) 1.03:35812642-35812667-2450.70GCGAGGCGGACGAGGAUGAGGnearMIRNAShortStack
bdi-b1.0r1-40263Brachypodium distachyon (Stiff brome) 1.03:36336014-36336166-5911.69AUUGAGGAUCUAAGGAUGCAUGCGnearMIRNAShortStack
bdi-b1.0r1-41539Brachypodium distachyon (Stiff brome) 1.03:41273527-41273726-5,99917.14UUAUGGAUUGAAGGGAGUACAnearMIRNAShortStack
bdi-b1.0r1-41594Brachypodium distachyon (Stiff brome) 1.03:41491050-41491136-1,3163.76UCAGUUAAUUCAGGAUGGAGAnearMIRNAShortStack
bdi-b1.0r1-41635Brachypodium distachyon (Stiff brome) 1.03:41654574-41654867-3,3149.47AAAAACUGCUUUCUGAAUUUUGGCnearMIRNAShortStack
bdi-b1.0r1-43773Brachypodium distachyon (Stiff brome) 1.03:50367051-50367279+9862.82UAAGAAUUAUGAAACGGAGGGAGCnearMIRNAShortStack
bdi-b1.0r1-43883Brachypodium distachyon (Stiff brome) 1.03:50834754-50834990+5891.68UCGGACCAAAGUGGAAACCCCnearMIRNAShortStack
bdi-b1.0r1-43891Brachypodium distachyon (Stiff brome) 1.03:50922433-50922541-4141.18GAGACAUCUUUUGUUGGACAGAGAnearMIRNAShortStack
bdi-b1.0r1-44218Brachypodium distachyon (Stiff brome) 1.03:52139429-52139593+1,2173.48AGUAAUAUGUGUCGGAGGGGGnearMIRNAShortStack
bdi-b1.0r1-44449Brachypodium distachyon (Stiff brome) 1.03:53119394-53119565+7052.01AUAAGUGACUCGGAUUUGUCAAGAnearMIRNAShortStack
bdi-b1.0r1-44712Brachypodium distachyon (Stiff brome) 1.03:54298855-54299013-7192.05UUUAUGGAUCUGAGGGAGUAGnearMIRNAShortStack
bdi-b1.0r1-44713Brachypodium distachyon (Stiff brome) 1.03:54301065-54301135-7572.16UUUAUGGAUCUGAGGGAGUAGnearMIRNAShortStack
bdi-b1.0r1-45182Brachypodium distachyon (Stiff brome) 1.03:56248110-56248291-171,192489.01UUUGAACUAAAGCAGCGACAnearMIRNAShortStack
bdi-b1.0r1-46358Brachypodium distachyon (Stiff brome) 1.04:1842016-1842247-3671.05AUAAAGAUCGAUCGGAUCAACGGCnearMIRNAShortStack
bdi-b1.0r1-47242Brachypodium distachyon (Stiff brome) 1.04:5164763-5164844+3971.13ACCGGACUGGAGCACGGAAAUGGCnearMIRNAShortStack
bdi-b1.0r1-48865Brachypodium distachyon (Stiff brome) 1.04:11471419-11471477-3661.05CAUUUUUUGUUGGACAGAGGGAGCnearMIRNAShortStack
bdi-b1.0r1-48902Brachypodium distachyon (Stiff brome) 1.04:11648952-11649184+6051.73AUUCUUUCGGUACUAGGGAGUGGCnearMIRNAShortStack
bdi-b1.0r1-49386Brachypodium distachyon (Stiff brome) 1.04:13395091-13395111+1940.55UUCAGUCAGAUGGUUUGGCCUnearMIRNAShortStack
bdi-b1.0r1-50346Brachypodium distachyon (Stiff brome) 1.04:17321901-17322078-2,0875.96UUUGAGAAUUGAACUAGAAGCmiR5185nearMIRNAShortStack
bdi-b1.0r1-50544Brachypodium distachyon (Stiff brome) 1.04:18009094-18009200-1,2223.49CCUUUGGGGAAGAAGGGAAACmiR9482nearMIRNAShortStack
bdi-b1.0r1-50586Brachypodium distachyon (Stiff brome) 1.04:18220855-18220936+4211.20GAGACAUCUUUCGUUGGACGGAGAnearMIRNAShortStack
bdi-b1.0r1-51598Brachypodium distachyon (Stiff brome) 1.04:24082204-24082501+2,9548.44GAGACAUCCUUCGUUGGACGGAGAnearMIRNAShortStack
bdi-b1.0r1-52044Brachypodium distachyon (Stiff brome) 1.04:26242405-26242461+1,5554.44UAGCCAAGAAUGACUUGCCUAmiR169nearMIRNAShortStack
bdi-b1.0r1-52735Brachypodium distachyon (Stiff brome) 1.04:29215806-29215833+4071.16GAGACAUCUUUCGUUGGACGGAGAnearMIRNAShortStack
bdi-b1.0r1-53046Brachypodium distachyon (Stiff brome) 1.04:30436891-30437095+4851.39UAAGAAUUAUGGAACGGAGUGAGCnearMIRNAShortStack
bdi-b1.0r1-53298Brachypodium distachyon (Stiff brome) 1.04:31590606-31590710+1,3063.73CUUAAUUCGGGACGGAGGGGGnearMIRNAShortStack
bdi-b1.0r1-53541Brachypodium distachyon (Stiff brome) 1.04:32670664-32670688+5301.51CAAGAAUUAUUGGACAGAGGGnearMIRNAShortStack
bdi-b1.0r1-54145Brachypodium distachyon (Stiff brome) 1.04:35040897-35041032-1,0472.99UUUGAGAAUUGAACUAGAAGCmiR5185nearMIRNAShortStack
bdi-b1.0r1-55179Brachypodium distachyon (Stiff brome) 1.04:38856283-38856305-1,5694.48UGACAGAAGAGAGAGAGCACmiR156nearMIRNAShortStack
bdi-b1.0r1-55759Brachypodium distachyon (Stiff brome) 1.04:41203380-41203567+3781.08GAGACAUCUUUUGUUGGACGAAGGnearMIRNAShortStack
bdi-b1.0r1-55872Brachypodium distachyon (Stiff brome) 1.04:41683440-41683681-2,2506.43UUGGGACAAGAAUUAUGAAACGGAnearMIRNAShortStack
bdi-b1.0r1-55925Brachypodium distachyon (Stiff brome) 1.04:41904828-41905016-1,9305.51UUGAGACAAGAAUUGUGAAACGGAnearMIRNAShortStack
bdi-b1.0r1-56019Brachypodium distachyon (Stiff brome) 1.04:42248322-42248346-5331.52UUUGACCAAGUUUGUAGAACAmiR5169nearMIRNAShortStack
bdi-b1.0r1-56322Brachypodium distachyon (Stiff brome) 1.04:43273681-43273704+220.06AUAUUGCAUGCAAUGAACGAAAUUnearMIRNAShortStack
bdi-b1.0r1-57565Brachypodium distachyon (Stiff brome) 1.04:48323014-48323045-1180.34UCUUUUGUUGUACGGAGGAAGnearMIRNAShortStack
bdi-b1.0r1-57940Brachypodium distachyon (Stiff brome) 1.05:1349478-1349500+590.17CAAGAAUUAUGAAACAGAGGGAGUnearMIRNAShortStack
bdi-b1.0r1-59413Brachypodium distachyon (Stiff brome) 1.05:9664021-9664280+5191.48ACUUAUUAUGAAUCGGAGGGGnearMIRNAShortStack
bdi-b1.0r1-61205Brachypodium distachyon (Stiff brome) 1.05:16956898-16956924-1,7264.93AGGUGCAGUGGCAGAUGCAGCmiR530nearMIRNAShortStack
bdi-b1.0r1-61234Brachypodium distachyon (Stiff brome) 1.05:17082874-17082923+6461.85ACUUAUUUCGGGACGGAGGGCnearMIRNAShortStack
bdi-b1.0r1-62642Brachypodium distachyon (Stiff brome) 1.05:22720980-22721078-1,0973.13UAUGUGAGGGUGGUAACUGAAmiR9480nearMIRNAShortStack
bdi-b1.0r1-63071Brachypodium distachyon (Stiff brome) 1.05:24542239-24542448-1,2433.55ACGGACAAGUAUUUAGAAACGGnearMIRNAShortStack
bdi-b1.0r1-63109Brachypodium distachyon (Stiff brome) 1.05:24710999-24711236-17,04048.67UGAUUGAGCCGUGCCAAUAUCmiR171nearMIRNAShortStack
bdi-b1.0r1-63449Brachypodium distachyon (Stiff brome) 1.05:26141931-26141951+1260.36AUAACGACAAGAAUUAUGGGAnearMIRNAShortStack
bdi-b1.0r1-63472Brachypodium distachyon (Stiff brome) 1.05:26232282-26232442-9032.58CGACAAGAAUUUAGUAACGGCGGCnearMIRNAShortStack